BAC Information

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BAC

Clone NameB6Ng01-099O01
Chromosome15 (Build37)
Map Location 28,260,353 - 28,368,494
singlet/doubletdoublet
Overlap geneDnahc5
Upstream geneAnk, BC087945, LOC100040622, BC052328, Trio, LOC667126
Downstream geneEG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099O01.bB6Ng01-099O01.g
ACCDH909550DH909551
length1,1041,114
definitionDH909550|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O01, 5' end.DH909551|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,367,377 - 28,368,494)(28,260,353 - 28,261,473)
sequence
gaattcagttttagggcagcctgattcctctcacctagagctgtggcgtt
atctagggatgagccgtgtctgtcctgctagatggctctctcgctgctcc
cgtggtttttctttctcacacaaaagctgatttacagctaggaaagtaga
gcagctatatcatttctgggttattataaaatgatacatgagaataatac
attacgtttatgttattcatacatgccaagctcagaatcatgatttttct
catttgcttttgttttaccaccaggaccaaaggggtttaataaatcactt
agagaagtgtgcacctcggaacttcatttgctgtttgcatctccatttat
cacatttgtctcactagaaaattgcttagaagcccacaaggaaattctgg
ttgataatcacattcaaaatacttctttaagtttaaaggaaaattctcct
tcagaaccttctctgttgtttccttttaatacttcctttacctgggcaat
ggttctgtcgggacaccaggacctaatcagaaggaggcgtctgaagcagt
cgagagatttatcgtaggcatttggaagcggctcctcttctgggttttct
ttatcaaaccaaactctccacatcttttcattccttgatatctgaaaaca
ccatgggttgggaagcgtgtcatgtcacacaaaactctttcagtgaattt
tcatgggcattttcgatcaaactttctaggcatgtgtaaactctatactg
tccctatttttaagctttatatcctaagaacaaaatgtctgattacataa
gatcgcagaccacttattcccaaatcagtctaggtctaggtgagccccag
tctacagctgccaagggaggaagcgtcctgaaatgcttgacttcacctct
gccttcacagtaataatctacaaggaaagaaaatcaatggagcctcattt
tcattatctcgaggaaatctatttgctccataaatcctcttacaacaggc
tcacccattcatgtttctcattcctaggacactttgacacaaggaagata
cttatacatattttgttatgcataacagaattggatcatattctattcga
tcta
gaattcttcctccaggtgatcctgggatgtggcttcttctccttatgcct
aatatccctacattattagtaaaagtttttgagtgtcatgtctgaattat
tagtaaaagttttcaagtgtcatgtctgagtttagttctgcgcctggatt
ttaggtatagtgacaccgatgcattttcataggtatgaatgattgagagg
aaggtaaaagaatgtcacagtgtaagaggaaatgtatacctttcccgttt
atttagacatatcttggtcttaatgcaaggacttaagctaatgatggtac
aaggaaagtctcttagatagtcttcagttttcaacaagcatatcaataaa
gaacatttttgttctattttttgacttcttaattgacttgctgtgaacgt
tacattatgcacccaatcacactcaccttcccatagctccatattggcct
ccacccttgcaaactgctcccacaaagcaaaacaaaagcaatccaaaata
aaaacaaaatctcacagtggaagctgtgacgtgtcatggtgtgtcacagt
attttgaccaaacagctctacttgcaaatcttcatatactatcagtcctg
gatcctcatcgggactcatcttggatattctgttgttttcccatgtcatg
gaaagcctaccctttggctctgcaggaccagccttttcatgtgctttagc
agctttgtagatgggggagcctttagggtgggtcaactcaaagtcctgga
tctgggcctgggtggtagctgagttgttcagcttttcatctctcctgtgc
ctgcaccctcagggccagctttctctaggtgagtggagagtggcggtggg
gcatgggggaactctgttctgggtgctgcagggccagctttgctacacca
taccaagaagacataggtctagctttcctgagcttcacacctttcagagt
ctgctcagccctgccctttcctttattttttatttttattattttttagg
gaaccagcataaattatcatcatgaatggggtttcagccaaattcatatt
gttcgtggtaggaatatataagaatagccaatatctgtctcatttcttca
ggttcatatgactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28367377_28368494
seq2: B6Ng01-099O01.b_46_1149 (reverse)

seq1  TAGATCG-ATAGAATATTGATCCCAAATCTGTTTATGCAATAAC-AAATA  48
      ||||||| |||||||| |||| |||| |||| |||||| ||||| |||||
seq2  TAGATCGAATAGAATA-TGAT-CCAATTCTG-TTATGC-ATAACAAAATA  46

seq1  TGTATTAAGTATCTTCCTTTGTGTCAAAAGTGGTCCTAGGAAATGAGGAA  98
      |||| |||||||||||| ||||||| ||||| |||||||| ||||| |||
seq2  TGTA-TAAGTATCTTCC-TTGTGTC-AAAGT-GTCCTAGG-AATGA-GAA  90

seq1  ACATGAATGGGTGAGGCCTGGTTGTAAGAGGATTTTATGGAGCAAATAAG  148
      |||||||||||||| |||| |||||||||||| |||||||||||||| ||
seq2  ACATGAATGGGTGA-GCCT-GTTGTAAGAGGA-TTTATGGAGCAAAT-AG  136

seq1  ATTTCCTCGAGATAATGAAAATGAGGCTCCATTGATTTTTCTTTCCTTGT  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTCCTCGAGATAATGAAAATGAGGCTCCATTGA-TTTTCTTTCCTTGT  185

seq1  AGATTTATTACTGTGAAGGCAGAGGTGAAGTCAAGCATTTCAGGACGCTT  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGA-TTATTACTGTGAAGGCAGAGGTGAAGTCAAGCATTTCAGGACGCTT  234

seq1  CCTCCCTTGGCAGCTGTAGACTGGGGCTCACCTAGACCTAGACTGATTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTGGCAGCTGTAGACTGGGGCTCACCTAGACCTAGACTGATTTG  284

seq1  GGAATAAGTGGTCTGCGATCTTATGTAATCAGACATTTTGTTCTTAGGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGTGGTCTGCGATCTTATGTAATCAGACATTTTGTTCTTAGGAT  334

seq1  ATAAAGCTTAAAAATAGGGACAGTATAGAGTTTACACATGCCTAGAAAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTTAAAAATAGGGACAGTATAGAGTTTACACATGCCTAGAAAGT  384

seq1  TTGATCGAAAATGCCCATGAAAATTCACTGAAAGAGTTTTGTGTGACATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCGAAAATGCCCATGAAAATTCACTGAAAGAGTTTTGTGTGACATG  434

seq1  ACACGCTTCCCAACCCATGGTGTTTTCAGATATCAAGGAATGAAAAGATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTTCCCAACCCATGGTGTTTTCAGATATCAAGGAATGAAAAGATG  484

seq1  TGGAGAGTTTGGTTTGATAAAGAAAACCCAGAAGAGGAGCCGCTTCCAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTTGGTTTGATAAAGAAAACCCAGAAGAGGAGCCGCTTCCAAA  534

seq1  TGCCTACGATAAATCTCTCGACTGCTTCAGACGCCTCCTTCTGATTAGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACGATAAATCTCTCGACTGCTTCAGACGCCTCCTTCTGATTAGGT  584

seq1  CCTGGTGTCCCGACAGAACCATTGCCCAGGTAAAGGAAGTATTAAAAGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGTCCCGACAGAACCATTGCCCAGGTAAAGGAAGTATTAAAAGGA  634

seq1  AACAACAGAGAAGGTTCTGAAGGAGAATTTTCCTTTAAACTTAAAGAAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGAGAAGGTTCTGAAGGAGAATTTTCCTTTAAACTTAAAGAAGT  684

seq1  ATTTTGAATGTGATTATCAACCAGAATTTCCTTGTGGGCTTCTAAGCAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAATGTGATTATCAACCAGAATTTCCTTGTGGGCTTCTAAGCAAT  734

seq1  TTTCTAGTGAGACAAATGTGATAAATGGAGATGCAAACAGCAAATGAAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTGAGACAAATGTGATAAATGGAGATGCAAACAGCAAATGAAGT  784

seq1  TCCGAGGTGCACACTTCTCTAAGTGATTTATTAAACCCCTTTGGTCCTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGGTGCACACTTCTCTAAGTGATTTATTAAACCCCTTTGGTCCTGG  834

seq1  TGGTAAAACAAAAGCAAATGAGAAAAATCATGATTCTGAGCTTGGCATGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAACAAAAGCAAATGAGAAAAATCATGATTCTGAGCTTGGCATGT  884

seq1  ATGAATAACATAAACGTAATGTATTATTCTCATGTATCATTTTATAATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAACATAAACGTAATGTATTATTCTCATGTATCATTTTATAATAA  934

seq1  CCCAGAAATGATATAGCTGCTCTACTTTCCTAGCTGTAAATCAGCTTTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAATGATATAGCTGCTCTACTTTCCTAGCTGTAAATCAGCTTTTG  984

seq1  TGTGAGAAAGAAAAACCACGGGAGCAGCGAGAGAGCCATCTAGCAGGACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAAGAAAAACCACGGGAGCAGCGAGAGAGCCATCTAGCAGGACA  1034

seq1  GACACGGCTCATCCCTAGATAACGCCACAGCTCTAGGTGAGAGGAATCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGGCTCATCCCTAGATAACGCCACAGCTCTAGGTGAGAGGAATCAG  1084

seq1  GCTGCCCTAAAACTGAATTC  1118
      ||||||||||||||||||||
seq2  GCTGCCCTAAAACTGAATTC  1104

seq1: chr15_28260353_28261473
seq2: B6Ng01-099O01.g_69_1182

seq1  GAATTCTTCCTCCAGGTGATCCTGGGATGTGGCTTCTTCTCCTTATGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTCCAGGTGATCCTGGGATGTGGCTTCTTCTCCTTATGCCT  50

seq1  AATATCCCTACATTATTAGTAAAAGTTTTTGAGTGTCATGTCTGAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCTACATTATTAGTAAAAGTTTTTGAGTGTCATGTCTGAATTAT  100

seq1  TAGTAAAAGTTTTCAAGTGTCATGTCTGAGTTTAGTTCTGCGCCTGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAAGTTTTCAAGTGTCATGTCTGAGTTTAGTTCTGCGCCTGGATT  150

seq1  TTAGGTATAGTGACACCGATGCATTTTCATAGGTATGAATGATTGAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTATAGTGACACCGATGCATTTTCATAGGTATGAATGATTGAGAGG  200

seq1  AAGGTAAAAGAATGTCACAGTGTAAGAGGAAATGTATACCTTTCCCGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAAGAATGTCACAGTGTAAGAGGAAATGTATACCTTTCCCGTTT  250

seq1  ATTTAGACATATCTTGGTCTTAATGCAAGGACTTAAGCTAATGATGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACATATCTTGGTCTTAATGCAAGGACTTAAGCTAATGATGGTAC  300

seq1  AAGGAAAGTCTCTTAGATAGTCTTCAGTTTTCAACAAGCATATCAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGTCTCTTAGATAGTCTTCAGTTTTCAACAAGCATATCAATAAA  350

seq1  GAACATTTTTGTTCTATTTTTTGACTTCTTAATTGACTTGCTGTGAACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTTGTTCTATTTTTTGACTTCTTAATTGACTTGCTGTGAACGT  400

seq1  TACATTATGCACCCAATCACACTCACCTTCCCATAGCTCCATATTGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATGCACCCAATCACACTCACCTTCCCATAGCTCCATATTGGCCT  450

seq1  CCACCCTTGCAAACTGCTCCCACAAAGCAAAACAAAAGCAATCCAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTTGCAAACTGCTCCCACAAAGCAAAACAAAAGCAATCCAAAATA  500

seq1  AAAACAAAATCTCACAGTGGAAGCTGTGACGTGTCATGGTGTGTCACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATCTCACAGTGGAAGCTGTGACGTGTCATGGTGTGTCACAGT  550

seq1  ATTTTGACCAAACAGCTCTACTTGCAAATCTTCATATACTATCAGTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACCAAACAGCTCTACTTGCAAATCTTCATATACTATCAGTCCTG  600

seq1  GATCCTCATCGGGACTCATCTTGGATATTCTGTTGTTTTCCCATGTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCATCGGGACTCATCTTGGATATTCTGTTGTTTTCCCATGTCATG  650

seq1  GAAAGCCTACCCTTTGGCTCTGCAGGACCAGCCTTTTCATGTGCTTTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTACCCTTTGGCTCTGCAGGACCAGCCTTTTCATGTGCTTTAGC  700

seq1  AGCTTTGTAGATGGGGGAGCCTTTAGGGTGGGTCAACTCAAAGTCCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTAGATGGGGGAGCCTTTAGGGTGGGTCAACTCAAAGTCCTGGA  750

seq1  TCTGGGCCTGGGTGGTAGCTGAGTTGTTCAGCTTTTCATCTCTCCTGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCCTGGGTGGTAGCTGAGTTGTTCAGCTTTTCATCTCTCCTGTGC  800

seq1  CTGCACCCTCAGGGCCAGCTTTCTCTAGGTGAGTGGAGAGTGGCGGTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCCTCAGGGCCAGCTTTCTCTAGGTGAGTGGAGAGTGGCGGTGGG  850

seq1  GCATGGGGGAACTCTGTTCTGGGTGCTGCAGGGCCAGCTTTGCTACACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGGAACTCTGTTCTGGGTGCTGCAGGGCCAGCTTTGCTACACCA  900

seq1  TACCAGGAAGACATAGGTCTAGCTTTCCTGAGC-TCACACC-TTCAGAGT  948
      ||||| ||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TACCAAGAAGACATAGGTCTAGCTTTCCTGAGCTTCACACCTTTCAGAGT  950

seq1  CTGCTCAGCCCTGCCC-TTCCTTTATTTTTTTATTTTTTTATTATTTTTT  997
      |||||||||||||||| |||||||||||||   | |||||||||||||||
seq2  CTGCTCAGCCCTGCCCTTTCCTTTATTTTT---TATTTTTATTATTTTTT  997

seq1  AAGGAACCAGCATTAATTTATCATCATGAATGTGTTTTCAGCCAAATTCA  1047
      | |||||||||| ||| ||||||||||||||| | |||||||||||||||
seq2  AGGGAACCAGCA-TAAATTATCATCATGAATGGGGTTTCAGCCAAATTCA  1046

seq1  TATTGTTTCCGTGGTAGGATATTATTAGAAATAAGCCCAATATC-GTCAT  1096
      |||||||  ||||||||||   ||| || ||||   |||||||| ||| |
seq2  TATTGTT--CGTGGTAGGAATATATAAG-AATA--GCCAATATCTGTC-T  1090

seq1  CATTTCTTCAGGTTCACTATGACTT  1121
      |||||||||||||||| ||||||||
seq2  CATTTCTTCAGGTTCA-TATGACTT  1114