BAC Information

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BAC

Clone NameB6Ng01-099O04
Chromosome15 (Build37)
Map Location 42,857,921 - 42,859,124
singlet/doubletsinglet
Overlap geneRspo2
Upstream geneLOC432947, LOC100039268, LOC100039197, Angpt1
Downstream geneLOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099O04.bB6Ng01-099O04.g
ACCDH909556DH909557
length1,180938
definitionDH909556|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O04, 5' end.DH909557|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttctataatttcttttttaatattgttttattattttaagttg
agcattaagtcagtacaatctactgtgaaccacaaagtatttttacttaa
ttcactcctgtttgtggtcagattttggcttactatcttaattctttggt
atttgcaatatatttaatatcagaaatggtactggccccaatcaaaacca
accaaccaagagttttcggaggaaaaccattatggttatcattgggtccc
caaattattgttagttagaccttgtcaccaaaaactaaccattcaatttg
aaagaatatctcatagttttaagaagtatcactgaataagcccacaatat
gaagtgtttcaagtaaatgtcacagtcatattacaaagccaaagactctc
tgatgtgggtgatttcattggaataattattagataactgacaaaaattt
agctgccttaaaagtatgagtcactgtgcacagatcggggcttagtgaaa
atagtatgtgtttcccatagaggctcacagcattcataacacaagctcag
atctcttggaaatcaagtcatagatggttgtaagccacgatgggactgaa
cccaggtcctctgcatgagcagcaagtctccttaaccactgagccaactc
tccatccccatctagtttattttatattagtgacctttttccacatgaag
attttgaaattgtgaatgccaggagctctttttgacattttcagtctaga
aaaataagtttttcagtctagtaaaataagttttagcttaattttccatt
cacttaatttcaatttacttttttttcaagagaatgccaagatttcgata
aaggaatgataaacctaataaatattttatgtattcagtacattctgtac
attcttaccaatgctcctttctcttctctactcctaactccacaccatcc
acacgtcctccgtttctcttcagaaaagggaagcccccaatgatagcaaa
tagaatgacatatcaaattgcaatagactagcacttctctcatattaagg
ctggatgagacacacagtagagaaagagtccaaaagcaggcaagagtaga
gacaacatcattccaccggttagattctgtagaggaccagctaccaactg
tacatatatacagacctagtcagggccgca

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccgcgaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttatagagacggagtttggagctgatatga
aaggatgggacccatgtagagactgccatagccagggatccaccccataa
tcagcattcaaaacgctgacaccattgcatacactagcaagatttattga
aaaggacccagatgttagcttgtctcttgtgaaactatgccgggggcccc
aacaaccacaatagtggatgctccacgtcagcttaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_42857921_42859124
seq2: B6Ng01-099O04.b_47_1226 (reverse)

seq1  TGCGGGCCTGACCTAGGTGCTTTGTATATATGTTACAGTTGTGTAGCTTG  50
      ||||| ||||| |||||   | |||||||||| |||||||| ||||| ||
seq2  TGCGGCCCTGA-CTAGG---TCTGTATATATG-TACAGTTG-GTAGC-TG  43

seq1  GTCTTCTTACAGGACTCCTAACCGTGGGAATGATGGTTGTCTCTTACTCT  100
      ||| || ||||| |   |||||||  |||||||| |||||||| ||||| 
seq2  GTCCTC-TACAGAA--TCTAACCGGTGGAATGAT-GTTGTCTC-TACTC-  87

seq1  TTGCCTGCTTTTGGGACTCTTTTCCTCCTACTGTGTTGTCTCATCCAGCC  150
      |||||||||||| |||||||||  || |||||||| ||||||||||||||
seq2  TTGCCTGCTTTT-GGACTCTTT--CT-CTACTGTG-TGTCTCATCCAGCC  132

seq1  TTAATATGAGGAGAAGTGCCTAGTCTTATTGCAATTTGATATGTCATTCT  200
      ||||||||| |||||||| |||||| ||||||||||||||||||||||| 
seq2  TTAATATGA-GAGAAGTG-CTAGTC-TATTGCAATTTGATATGTCATTC-  178

seq1  TATTTGCTATTCATTGGGGGCTTCCCTTTTCTGAAGAGAAACGGAGGACG  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTA-TCATTGGGGGCTTCCCTTTTCTGAAGAGAAACGGAGGACG  227

seq1  TGTGGATGGTGTGGAGTTAGGAGTAGAGAAGAGAAAGGAGCATTGGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGGTGTGGAGTTAGGAGTAGAGAAGAGAAAGGAGCATTGGTAAG  277

seq1  AATGTACAGAATGTACTGAATACATAAAATATTTATTAGGTTTATCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACAGAATGTACTGAATACATAAAATATTTATTAGGTTTATCATTC  327

seq1  CTTTATCGAAATCTTGGCATTTCTCTTGAAAAAAAAGTAAATTGAAATTA  400
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTTATCGAAATCTTGGCA-TTCTCTTGAAAAAAAAGTAAATTGAAATTA  376

seq1  AGTGAATGGAAAATTAAGCTAAAACTTATTTTACTAGACTGAAAAACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGGAAAATTAAGCTAAAACTTATTTTACTAGACTGAAAAACTTA  426

seq1  TTTTTCTAGACTGAAAATGTCAAAAAGAGCTCCTGGCATTCACAATTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAGACTGAAAATGTCAAAAAGAGCTCCTGGCATTCACAATTTCA  476

seq1  AAATCTTCATGTGGAAAAAGGTCACTAATATAAAATAAACTAGATGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCATGTGGAAAAAGGTCACTAATATAAAATAAACTAGATGGGGA  526

seq1  TGGAGAGTTGGCTCAGTGGTTAAGGAGACTTGCTGCTCATGCAGAGGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTGGCTCAGTGGTTAAGGAGACTTGCTGCTCATGCAGAGGACC  576

seq1  TGGGTTCAGTCCCATCGTGGCTTACAACCATCTATGACTTGATTTCCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCAGTCCCATCGTGGCTTACAACCATCTATGACTTGATTTCCAAG  626

seq1  AGATCTGAGCTTGTGTTATGAATGCTGTGAGCCTCTATGGGAAACACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGAGCTTGTGTTATGAATGCTGTGAGCCTCTATGGGAAACACATA  676

seq1  CTATTTTCACTAAGCCCCGATCTGTGCACAGTGACTCATACTTTTAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCACTAAGCCCCGATCTGTGCACAGTGACTCATACTTTTAAGGC  726

seq1  AGCTAAATTTTTGTCAGTTATCTAATAATTATTCCAATGAAATCACCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATTTTTGTCAGTTATCTAATAATTATTCCAATGAAATCACCCAC  776

seq1  ATCAGAGAGTCTTTGGCTTTGTAATATGACTGTGACATTTACTTGAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAGTCTTTGGCTTTGTAATATGACTGTGACATTTACTTGAAACA  826

seq1  CTTCATATTGTGGGCTTATTCAGTGATACTTCTTAAAACTATGAGATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATTGTGGGCTTATTCAGTGATACTTCTTAAAACTATGAGATATT  876

seq1  CTTTCAAATTGAATGGTTAGTTTTTGGTGACAAGGTCTAACTAACAATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAATTGAATGGTTAGTTTTTGGTGACAAGGTCTAACTAACAATAA  926

seq1  TTTGGGGACCCAATGATAACCATAATGGTTTTCCTCCGAAAACTCTTGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGACCCAATGATAACCATAATGGTTTTCCTCCGAAAACTCTTGGT  976

seq1  TGGTTGGTTTTGATTGGGGCCAGTACCATTTCTGATATTAAATATATTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTTTGATTGGGGCCAGTACCATTTCTGATATTAAATATATTGC  1026

seq1  AAATACCAAAGAATTAAGATAGTAAGCCAAAATCTGACCACAAACAGGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCAAAGAATTAAGATAGTAAGCCAAAATCTGACCACAAACAGGAG  1076

seq1  TGAATTAAGTAAAAATACTTTGTGGTTCACAGTAGATTGTACTGACTTAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAGTAAAAATACTTTGTGGTTCACAGTAGATTGTACTGACTTAA  1126

seq1  TGCTCAACTTAAAATAATAAAACAATATTAAAAAAGAAATTATAGAAAGA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAACTTAAAATAATAAAACAATATTAAAAAAGAAATTATAGAAAGA  1176

seq1  ATTC  1204
      ||||
seq2  ATTC  1180


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