BAC Information

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BAC

Clone NameB6Ng01-101B20
Chromosome15 (Build37)
Map Location 18,538,488 - 18,539,356
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneCdh10, EG666857, EG666875, LOC621884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101B20.bB6Ng01-101B20.g
ACCDH910406DH910407
length1,068871
definitionDH910406|Mus musculus domesticus DNA, BAC clone: B6Ng01-101B20, 5' end.DH910407|Mus musculus domesticus DNA, BAC clone: B6Ng01-101B20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttagaactgtaccccattttttaattaggttatttgttt
tgttggtgtctagtttcttgactaaatatatataatacatattatattta
caaattatatgtatatattgtttttagtcttctgtttatgtagtatgaat
atcttttgccattctgtaggttgctcttttgaccttttgatggtgtcctt
tgtcttacagaagcttttcagtttcattaggtcccatttattaactcttg
atcttagtgtcagagctgttagtgttccactgaggaacttgtctcctgta
gcaatatattcaaggctatattccccactttctcttcattcaaatttagt
ttttactgggttgtgttgttgttgttgttctgttttatgaatctttcatc
atatggagttgatatttagaataacgggcatgggtctacttgaattcttc
tatatgcagacgtccaattcgaccagcaccatttggtgaagctgcttttc
tctttcactgtatacttttggcttatttatcaaaatcaaatgtacatagg
tatgtagatttacttctgggtttttaattttattctattgatcagcctat
atgatctcatgccatggtcatgtagtagtcattattattgctccgtagta
tagctttaaatcaaggatggtgatacctacagaagttcttatattgtatg
atttttttttttgttttttagttgtcctggtttttttttagtgttttgtt
tatttttacatattgagttttgtattgttctttcaagggtctttaaatga
ttttcttggaattttgatggacatttctttgaatatgtagattgttttgg
ttgggtgggccacttttgctatgttaattgcaagaatctatgagcatggg
tagatattcccaactctgatattcaacttatttctttcaaaaattaaaat
tttgttccttaagcttttcactgcttggatagaattagaccaagaaattt
tacataattgtcactttatgagtagtgcttcccctaatttctttttcaga
gtgttattatatgtctac
gaattctgtgccaggcattggcttgctgtccatacaaagcatttatttga
cagagactgacaactatttcattaaaggaaatctcactgcaattcccaga
gattgttgttcaaaggtatgggcactcagttttgatggaagagagacttg
tactttataaattatccttgtgcataacatatttcttaatctattcttta
tggattgaacaaatcacaccggagtactttctatgtaaaactaagcagga
cttagttttcctggatgctgagggaatacaaagtaagacctgcatttata
tgcttgataaacttctaccacctccccctaccttgtcccttctgcccatg
gttcttcggaggactttaagatgttttgaagtagatttgaattagtttta
agatttgtcaagagaccctttcttctaatcagatgttttgaagacaaata
ctaaagtagtttgatatcaaaagtggatttatgtcttatatgcagttcat
tgatatctatttgttctagtatggtccagtcactatatcatttaaattac
atcataaattagccatcagtattagctaacaatgcttgagtatacatttg
gagctaaaattgtatccagattgtcactgctataactagtaaataatttt
tgatgtgttattacttaaatgaagtaccaaaatataaattgtctgttctg
aatcaatcaataatgaggtcaattttttcagagtatgttccttatagaaa
atttagacatgattttttaacttcagtttgcttagtataagagtgagaat
tttcaagtccctaaaagtacatctaaaacaggattcctctctctctccct
ctctctctcttacaactctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18538488_18539356
seq2: B6Ng01-101B20.g_70_940 (reverse)

seq1  AGAGAGGT---AGAGAGAGAGAGGGAGAGAGAGAGGAATCCTGTTTTTAG  47
      |||||| |   |||||||||||||||||||||||||||||||| ||||||
seq2  AGAGAGTTGTAAGAGAGAGAGAGGGAGAGAGAGAGGAATCCTG-TTTTAG  49

seq1  ATGTACTTTTAGGGACTTGAAAATTCTCACTCTTATACTAAGCAAACTGA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTTTAGGGACTTGAAAATTCTCACTCTTATACTAAGCAAACTGA  99

seq1  AGTTAAAAAATCATGTCTAAATTTTCTATAAGGAACATACTCTGAAAAAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAATCATGTCTAAATTTTCTATAAGGAACATACTCTGAAAAAA  149

seq1  TTGACCTCATTATTGATTGATTCAGAACAGACAATTTATATTTTGGTACT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCATTATTGATTGATTCAGAACAGACAATTTATATTTTGGTACT  199

seq1  TCATTTAAGTAATAACACATCAAAAATTATTTACTAGTTATAGCAGTGAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAGTAATAACACATCAAAAATTATTTACTAGTTATAGCAGTGAC  249

seq1  AATCTGGATACAATTTTAGCTCCAAATGTATACTCAAGCATTGTTAGCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGATACAATTTTAGCTCCAAATGTATACTCAAGCATTGTTAGCTA  299

seq1  ATACTGATGGCTAATTTATGATGTAATTTAAATGATATAGTGACTGGACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATGGCTAATTTATGATGTAATTTAAATGATATAGTGACTGGACC  349

seq1  ATACTAGAACAAATAGATATCAATGAACTGCATATAAGACATAAATCCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGAACAAATAGATATCAATGAACTGCATATAAGACATAAATCCAC  399

seq1  TTTTGATATCAAACTACTTTAGTATTTGTCTTCAAAACATCTGATTAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATATCAAACTACTTTAGTATTTGTCTTCAAAACATCTGATTAGAA  449

seq1  GAAAGGGTCTCTTGACAAATCTTAAAACTAATTCAAATCTACTTCAAAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTCTCTTGACAAATCTTAAAACTAATTCAAATCTACTTCAAAAC  499

seq1  ATCTTAAAGTCCTCCGAAGAACCATGGGCAGAAGGGACAAGGTAGGGGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAGTCCTCCGAAGAACCATGGGCAGAAGGGACAAGGTAGGGGGA  549

seq1  GGTGGTAGAAGTTTATCAAGCATATAAATGCAGGTCTTACTTTGTATTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAGAAGTTTATCAAGCATATAAATGCAGGTCTTACTTTGTATTCC  599

seq1  CTCAGCATCCAGGAAAACTAAGTCCTGCTTAGTTTTACATAGAAAGTACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATCCAGGAAAACTAAGTCCTGCTTAGTTTTACATAGAAAGTACT  649

seq1  CCGGTGTGATTTGTTCAATCCATAAAGAATAGATTAAGAAATATGTTATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGTGATTTGTTCAATCCATAAAGAATAGATTAAGAAATATGTTATG  699

seq1  CACAAGGATAATTTATAAAGTACAAGTCTCTCTTCCATCAAAACTGAGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGATAATTTATAAAGTACAAGTCTCTCTTCCATCAAAACTGAGTG  749

seq1  CCCATACCTTTGAACAACAATCTCTGGGAATTGCAGTGAGATTTCCTTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACCTTTGAACAACAATCTCTGGGAATTGCAGTGAGATTTCCTTTA  799

seq1  ATGAAATAGTTGTCAGTCTCTGTCAAATAAATGCTTTGTATGGACAGCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAGTTGTCAGTCTCTGTCAAATAAATGCTTTGTATGGACAGCAA  849

seq1  GCCAATGCCTGGCACAGAATTC  869
      ||||||||||||||||||||||
seq2  GCCAATGCCTGGCACAGAATTC  871