BAC Information

Click to search

BAC

Clone NameB6Ng01-101C07
Chromosome15 (Build37)
Map Location 37,965,873 - 37,966,972
singlet/doubletsinglet
Overlap geneEdd1
Upstream geneLOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478
Downstream geneOdf1, LOC382986, LOC667563, Klf10, Azin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101C07.bB6Ng01-101C07.g
ACCDH910424DH910425
length1,2721,088
definitionDH910424|Mus musculus domesticus DNA, BAC clone: B6Ng01-101C07, 5' end.DH910425|Mus musculus domesticus DNA, BAC clone: B6Ng01-101C07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaagaaacagacttggaggaggaagcagctcgttatga
gagaaaagggtaccagccagataaaatgctagctaatcagttaaggaaaa
agccaaaagcggctggcgaaggccagcatgctgttcagcctcggggcaat
cggcttcaaggtcatagtgcacttccgtcctatgcggagcccccgccctg
cgtaaggcgtcagccctgcgcagagaggcaatggacagagaggcaatgcg
cagactcgttcattcccagagaggaacaaaggaaaatgcaacaggcattt
ccgatctttgaagaagccgagcagtggtggcgtacaccgttaatcccagc
acttgggagacagaggcaggctcttgcagcctacaaggtcttattgtcca
ccctggagttgtagatcaggattataaaggggaacttcaggttctctgtt
cttgtcctcaggttgtcttttctatatcacaagggacagaatagctcaac
taataattttgccaagcctacatggctgtttttccttcctctagtattcc
ttgagctgccagagggattggttctactagaaatgattctgattacttaa
taatgcctttagattgttgtcaaattttatctactcctcatgtaggggta
aaccctcgtggcgtcaggccattacaggtctggcaaatggatgtcacgca
tatttcctcctttgggagaaatcaatatttacatgtctctattgacacct
gttctggcatcatgtttgcttctccgttaaccggagaaaaagcctcacat
gtgattcaacattgccttgaggcatggagtgcttgggggaaacccaaact
ctttaagactgataatggaccagcttatacatctaaaaaattccagcagt
tctgccgtcagatggacgtgacccacctgactggacttccatacaaccct
caaggacagggtattgttgagtgtgcacatcgcaccctcaatcctatcta
ttaaaacagaagggggagtccaggctctaccccgagtactaggatgtctg
tgtcttaggcactctttacactccattttaaatcttgatgctcattgcct
aactgcggcgagtcattgttctcaagcccgaaagaccatagatgttatgt
aaagtcctgataaatgtatgccggatcaatgaagacccggatatttgttt
ctcatagaaacacattgataccgaatgctcactcataatctacgactaga
ctacgggcagtactgcgtatgc
gaattcattttcactggattttttgagaaatccgtgattttcatgctata
aaataaatgccctccttctctccctgtttccacagatggttgagtgggct
taattcttaagcataaataaactggatttttggtacacacctttgattct
gatgtttgggaagcaggagactcaggccagcctgggccacatgagaccct
gtctcaaggaggggaaagggcatcggtgcaccttggaagttaatcactag
cagatgaagagtatgacctgaggtttttttcatttatttgaactcaaaat
tgcaaggatattaaaacttccatatcttatgttttttatatttataaatc
ttaatacagttaatgtgtcttttgcttccatagtcatgtggtcaaacttg
aatacaagaggggcgagcaactttaacccttgtctttggattgcttttat
tgggagctaccagacttggcctgaattgtattctctcagttcttaacata
gcactggaaacatccctgcttccttctcgggtggtaatgggtgatagaat
gtctaaaccattctgttgttctccttctctccctccctgcccttctccca
ctctcccctttcctttcttgttttcctcctctccctccccattctcctct
cctcctacctctctcccctgcccctccccctctccctcctatcatccctc
tctctaactgtggagttggatgccattgctctgtgtcttttcgctggttg
tacgagctctgtcatggtgtttggttaaggattgtgattcctgagtgaaa
ggtttgaggggaacacttgagaggtttgaggaagtaagtgggcaacagaa
caggattgggatccacttgttatttggtggagaactgagtgagcgtctaa
agaaggcttggagtcccaactcaggacagttggaatgtgcttaagctaac
acttcagagagatgaaaagcatggacccatcttgtcccttctggtcaaga
tgcttgctgaatgctgctagacggatgttgcttgcaataaccggtctatg
ggatcctaaaacttttctataaagcttcaaggctaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_37965873_37966972
seq2: B6Ng01-101C07.g_68_1153 (reverse)

seq1  TTAGCCTTGAAGCTTTATGAGAAAAGGTTTTAGTGATCACTATAGACCTG  50
      |||||||||||||||||| |||||| ||||||| |||| | ||||||| |
seq2  TTAGCCTTGAAGCTTTAT-AGAAAA-GTTTTAG-GATC-CCATAGACCGG  46

seq1  CTATGTAGCAAAGCAACAGTCCGTCTAGCAGCACTCAGCAAGCATCTGTG  100
       ||  | || |||||||| |||||||||||||| ||||||||||||| ||
seq2  TTA--TTGC-AAGCAACA-TCCGTCTAGCAGCATTCAGCAAGCATCT-TG  91

seq1  ACACAGAAGGGACAAGATGGGTCCATGCTTTTCATCTCTTCTGAAGTGTT  150
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AC-CAGAAGGGACAAGATGGGTCCATGCTTTTCATCTC-TCTGAAGTGTT  139

seq1  AGCTTAAGCACATTTCCAACTGTCCTGAGTTGGGGACTCCAAGGCCTTCT  200
      |||||||||||| |||||||||||||||||| |||||||||| |||||||
seq2  AGCTTAAGCACA-TTCCAACTGTCCTGAGTT-GGGACTCCAA-GCCTTCT  186

seq1  TTAGACGCTCACTCAGTTCTCCACCAAATACCAAGTGGATCCCAATCCTG  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTAGACGCTCACTCAGTTCTCCACCAAATAACAAGTGGATCCCAATCCTG  236

seq1  TTCTGTTGCCCACTTACTTCCTTCAACCCTCTCAAGTGTTCCCCTCAAAC  300
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  TTCTGTTGCCCACTTACTTCC-TCAAACCTCTCAAGTGTTCCCCTCAAAC  285

seq1  CTTTCACTCAGGAATCACAATCCTTAACCAAACACCATGACAGAGCTCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTCAGGAATCACAATCCTTAACCAAACACCATGACAGAGCTCGT  335

seq1  ACAACCAGCG-AAAGACACAGAGCAATGGCATCCAACTCCACAGTTAGAG  399
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGCGAAAAGACACAGAGCAATGGCATCCAACTCCACAGTTAGAG  385

seq1  AGAGGGATGATAGGAGGGAGAGGGGGAGGGGCAGGGGAGAGAGGTAGGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATGATAGGAGGGAGAGGGGGAGGGGCAGGGGAGAGAGGTAGGAG  435

seq1  GAGAGGAGAATGGGGAGGGAGAGGAGGAAAACAAGAAAGGAAAGGGGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGAATGGGGAGGGAGAGGAGGAAAACAAGAAAGGAAAGGGGAGA  485

seq1  GTGGGAGAAGGGCAGGGAGGGAGAGAAGGAGAACAACAGAATGGTTTAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGAAGGGCAGGGAGGGAGAGAAGGAGAACAACAGAATGGTTTAGA  535

seq1  CATTCTATCACCCATTACCACCCGAGAAGGAAGCAGGGATGTTTCCAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATCACCCATTACCACCCGAGAAGGAAGCAGGGATGTTTCCAGTG  585

seq1  CTATGTTAAGAACTGAGAGAATACAATTCAGGCCAAGTCTGGTAGCTCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTAAGAACTGAGAGAATACAATTCAGGCCAAGTCTGGTAGCTCCC  635

seq1  AATAAAAGCAATCCAAAGACAAGGGTTAAAGTTGCTCGCCCCTCTTGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCAATCCAAAGACAAGGGTTAAAGTTGCTCGCCCCTCTTGTAT  685

seq1  TCAAGTTTGACCACATGACTATGGAAGCAAAAGACACATTAACTGTATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTGACCACATGACTATGGAAGCAAAAGACACATTAACTGTATTA  735

seq1  AGATTTATAAATATAAAAAACATAAGATATGGAAGTTTTAATATCCTTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATAAATATAAAAAACATAAGATATGGAAGTTTTAATATCCTTGC  785

seq1  AATTTTGAGTTCAAATAAATGAAAAAAACCTCAGGTCATACTCTTCATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGAGTTCAAATAAATGAAAAAAACCTCAGGTCATACTCTTCATCT  835

seq1  GCTAGTGATTAACTTCCAAGGTGCACCGATGCCCTTTCCCCTCCTTGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGATTAACTTCCAAGGTGCACCGATGCCCTTTCCCCTCCTTGAGA  885

seq1  CAGGGTCTCATGTGGCCCAGGCTGGCCTGAGTCTCCTGCTTCCCAAACAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCATGTGGCCCAGGCTGGCCTGAGTCTCCTGCTTCCCAAACAT  935

seq1  CAGAATCAAAGGTGTGTACCAAAAATCCAGTTTATTTATGCTTAAGAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAAAGGTGTGTACCAAAAATCCAGTTTATTTATGCTTAAGAATT  985

seq1  AAGCCCACTCAACCATCTGTGGAAACAGGGAGAGAAGGAGGGCATTTATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCACTCAACCATCTGTGGAAACAGGGAGAGAAGGAGGGCATTTATT  1035

seq1  TTATAGCATGAAAATCACGGATTTCTCAAAAAATCCAGTGAAAATGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCATGAAAATCACGGATTTCTCAAAAAATCCAGTGAAAATGAATT  1085

seq1  C  1100
      |
seq2  C  1086