BAC Information

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BAC

Clone NameB6Ng01-101I18
Chromosome15 (Build37)
Map Location 21,984,833 - 22,103,947
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101I18.bB6Ng01-101I18.g
ACCDH910699DH910700
length1,1861,202
definitionDH910699|Mus musculus domesticus DNA, BAC clone: B6Ng01-101I18, 5' end.DH910700|Mus musculus domesticus DNA, BAC clone: B6Ng01-101I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,102,750 - 22,103,947)(21,984,833 - 21,986,046)
sequence
gaattctctgttatgaagagtccttattagcttagtgtcacactctacag
gatgtttccactgcataggtttccacactgcccagtagagggtaaagtat
tatattttggaatataaatttaccaagaaggttagcaaaataaataaata
aataaataaataaataaataaataaataagaaatcaagcacactttgaag
gctattgaagttgaatatgctaaccagaaaaaactcttaaagtgctgtct
attgccttcctttcttcctgactacaaaatctaacttttgctgttgcctc
tgaagcatggatagtgctgatatcaccatcttgatgttagaacttaattt
cttcagctttctgatgtggaaaaatattgaaagatcaccctgagggtaac
cataccagtggtcagagtctgaaaggcaaaggagagtgaactggagtaag
agagaaactaaatttggtggtatagtgaaatatgaagcaactctgcatta
catagtcctccttcttccaaagtagtagaattgctaaatttctgtctctt
tcagttgcctccttaacatcctaacttccatttctatggatggcaggtca
tctttgagacactgagacttgatgatacaaaagagaccttatttcagtcc
ctttaaacacactctcatgttgaaggaacttaccagacatttgccttcct
tcttttgacaactgtttatcccattcattagatcacataatgtttgggca
tggtatttaatttctacagtcccctgcagattatagatgttgctatctgt
catgtatactgcaaagactattttttcctttcttatgtggtttccttgtt
ttcttcattttgatgaagcaattgctgatagcctgatgattctaatgaaa
ttttttcaggttttagttttttatatagttttgtatattaactttatgtt
gggcattgagattactcagtcattcttgacacatgttaccaagcctgaaa
ttctgtataaactattaggtgaaggttaacattgtccggattgcctttcc
agcttactcagatggagtatccctttatcaggaggagttcttctctccct
ggactttctgttgggggagtcaaactcagctacggtacaccttcccctct
tttcctctttccatttttggtaagaacagcctggga
gaattcacgcagttgaatccttctcaacagtctgtgttgcgggaacactt
cattaccaccgttccccagctgaagagttctgaatcgaggctggatcctt
ctcaacagtctgttttacgggaacacttcattaccatgacccgcagttct
ggttccggaatgaggaatcttccttgcgccagtgatggtaaccgtcccgg
gttttcttgtccccggatttttcgtcccaggtcttctcgtcccaggtctt
ctcgacccgggtcttctcgtcccgggtctcagcaccaactcttcccgggt
ttcggcaccaactcttacccgcgttctcgcgaccggccaagaagaacgca
acaaaccggaatcttctgcggcaaaagctttattgcttacatcttcagga
gccagagagcaagagagcaagagtgcaagagtgcaagagagagagaacaa
gaaagcaagaaaaagaacaagaacaagaaagcaagagagagaatggcaaa
accccgtcccttttaaggagaattatcctccgcctaggacgtattactcc
ctgattggctgcagcccatcggcccagttgtcatcacgagaaaggcagaa
cacatggcgggaaaactgcccctgcacgtgtgcagattatgtttaccact
tagaacaagctgtcagcgccatcttgtaatggcaaatgtgagggcggctt
cctacaatataccaaaaagaaacatttatcagattcatacaagtctttct
atggcaaaaatataaataagacattaatttcattttgttagaaattttca
aagtgaggtatttttgagattcttttctctgaaacgtctttggttatctt
tctacacttccaatttattaattaatgtctttcgggtgtgttctttgaga
taagcctctcctaaccataacaacagcaacattaaaacatatatttcttt
tccttttacttagaatttagttctactttctaactatgtttcattaacat
tagttttttgttattgacttttcttttttttactgatgacaaggaaatca
ccatttttatgtatatattagaattattctaaacatgctgtaagggaaac
aggcagccattactgttaaatgaatactaatttcttttactccacaatat
tggaagccattggaaatgtagtttctgtatgaataccaaccaaatgtcca
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22102750_22103947
seq2: B6Ng01-101I18.b_46_1231 (reverse)

seq1  TCCCAGGCTGGTTCTTATCAGAAAAAGGGAAAGAGGAAAAGA--GGAAGT  48
      ||||||||| ||||||| |  ||||| |||||||||||||||  ||||| 
seq2  TCCCAGGCT-GTTCTTACC--AAAAATGGAAAGAGGAAAAGAGGGGAAGG  47

seq1  TGAACTTGTAGACTGGAGGTTTGAACTCCCC--ACAGAAAGT-CAGGGAA  95
      || ||  |||| |||   ||||| |||||||  ||||||||| |||||| 
seq2  TGTAC-CGTAG-CTG--AGTTTG-ACTCCCCCAACAGAAAGTCCAGGGA-  91

seq1  GGAGAAGGAACTCTTCCTGATAAAGGGATTACTCCATTTTGAGTTAAGCT  145
       ||||| |||||| |||||||||||||| ||||||| | |||| ||||||
seq2  -GAGAA-GAACTCCTCCTGATAAAGGGA-TACTCCA-TCTGAG-TAAGCT  136

seq1  GGGAAGGCAATCTGGACAATGTTAAACTTCAACCTTAATTAGTTTATACA  195
      || ||||||||| |||||||||||| |||| ||||  | |||||||||||
seq2  GGAAAGGCAATCCGGACAATGTTAACCTTC-ACCT--AATAGTTTATACA  183

seq1  GAATTTCAGGCTTGGTAACATGTGTCAAGAATGACTGAGTAATCTCAATG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAGGCTTGGTAACATGTGTCAAGAATGACTGAGTAATCTCAATG  233

seq1  CCCAACATAAAGTTAATTATACAAAACTATAT-AAAAACTAAAACCTGAA  294
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  CCCAACATAAAGTTAA-TATACAAAACTATATAAAAAACTAAAACCTGAA  282

seq1  AAAATTTCATTAGAATCATCAGGCTATCAGCAATTGCTTCATCAATAATG  344
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAATTTCATTAGAATCATCAGGCTATCAGCAATTGCTTCATCAA-AATG  331

seq1  AAG-AAACAAGGAAACCACATAAGAAAGGAAAAAATAGTCTTTGCAGTAT  393
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACAAGGAAACCACATAAGAAAGGAAAAAATAGTCTTTGCAGTAT  381

seq1  ACATGACAGATAGCAACATCTATAATCTGCAGGGGACTGTAGAAATTAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAGATAGCAACATCTATAATCTGCAGGGGACTGTAGAAATTAAA  431

seq1  TACCATGCCCAAACATTATGTGATCTAATGAATGGGATAAACAGTTGTCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGCCCAAACATTATGTGATCTAATGAATGGGATAAACAGTTGTCA  481

seq1  AAAGAAGGAAGGCAAATGTCTGGTAAGTTCCTTCAACATGAGAGTGTGTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGAAGGCAAATGTCTGGTAAGTTCCTTCAACATGAGAGTGTGTT  531

seq1  TAAAGGGACTGAAATAAGGTCTCTTTTGTATCATCAAGTCTCAGTGTCTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGACTGAAATAAGGTCTCTTTTGTATCATCAAGTCTCAGTGTCTC  581

seq1  AAAGATGACCTGCCATCCATAGAAATGGAAGTTAGGATGTTAAGGAGGCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGACCTGCCATCCATAGAAATGGAAGTTAGGATGTTAAGGAGGCA  631

seq1  ACTGAAAGAGACAGAAATTTAGCAATTCTACTACTTTGGAAGAAGGAGGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGAGACAGAAATTTAGCAATTCTACTACTTTGGAAGAAGGAGGA  681

seq1  CTATGTAATGCAGAGTTGCTTCATATTTCACTATACCACCAAATTTAGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAATGCAGAGTTGCTTCATATTTCACTATACCACCAAATTTAGTT  731

seq1  TCTCTCTTACTCCAGTTCACTCTCCTTTGCCTTTCAGACTCTGACCACTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTACTCCAGTTCACTCTCCTTTGCCTTTCAGACTCTGACCACTG  781

seq1  GTATGGTTACCCTCAGGGTGATCTTTCAATATTTTTCCACATCAGAAAGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTTACCCTCAGGGTGATCTTTCAATATTTTTCCACATCAGAAAGC  831

seq1  TGAAGAAATTAAGTTCTAACATCAAGATGGTGATATCAGCACTATCCATG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAATTAAGTTCTAACATCAAGATGGTGATATCAGCACTATCCATG  881

seq1  CTTCAGAGGCAACAGCAAAAGTTAGATTTTGTAGTCAGGAAGAAAGGAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGGCAACAGCAAAAGTTAGATTTTGTAGTCAGGAAGAAAGGAAG  931

seq1  GCAATAGACAGCACTTTAAGAGTTTTTTCTGGTTAGCATATTCAACTTCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGACAGCACTTTAAGAGTTTTTTCTGGTTAGCATATTCAACTTCA  981

seq1  ATAGCCTTCAAAGTGTGCTTGATTTCTTATTTATTTATTTATTTATTTAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTTCAAAGTGTGCTTGATTTCTTATTTATTTATTTATTTATTTAT  1031

seq1  TTATTTATTTATTTATTTTGCTAACCTTCTTGGTAAATTTATATTCCAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTTGCTAACCTTCTTGGTAAATTTATATTCCAAA  1081

seq1  ATATAATACTTTACCCTCTACTGGGCAGTGTGGAAACCTATGCAGTGGAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATACTTTACCCTCTACTGGGCAGTGTGGAAACCTATGCAGTGGAA  1131

seq1  ACATCCTGTAGAGTGTGACACTAAGCTAATAAGGACTCTTCATAACAGAG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGTAGAGTGTGACACTAAGCTAATAAGGACTCTTCATAACAGAG  1181

seq1  AATTC  1198
      |||||
seq2  AATTC  1186

seq1: chr15_21984833_21986046
seq2: B6Ng01-101I18.g_70_1271

seq1  GAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTGTTGCGGGAACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTGTTGCGGGAACACTT  50

seq1  CATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATCGAGGCTGGATCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATCGAGGCTGGATCCTT  100

seq1  CTCAACAGTCTGTTTTACGGGAACACTTCATTACCATGACCCGCAGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGTCTGTTTTACGGGAACACTTCATTACCATGACCCGCAGTTCT  150

seq1  GGTTCCGGAATGAGGAATCTTCCTTGCGCCAGTGATGGTAACCGTCCCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCGGAATGAGGAATCTTCCTTGCGCCAGTGATGGTAACCGTCCCGG  200

seq1  GTTTTCTTGTCCCCGGATTTTTCGTCCCAGGTCTTCTCGTCCCAGGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTGTCCCCGGATTTTTCGTCCCAGGTCTTCTCGTCCCAGGTCTT  250

seq1  CTCGACCCGGGTCTTCTCGTCCCGGGTCTCAGCACCAACTCTTCCCGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACCCGGGTCTTCTCGTCCCGGGTCTCAGCACCAACTCTTCCCGGGT  300

seq1  TTCGGCACCAACTCTTACCCGCGTTCTCGCGACCGGCCAAGAAGAACGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCACCAACTCTTACCCGCGTTCTCGCGACCGGCCAAGAAGAACGCA  350

seq1  ACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACATCTTCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACATCTTCAGGA  400

seq1  GCCAGAGAGCAAGAGAGCAAGAGTGCAAGAGTGCAAGAGAGAGAGAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAGCAAGAGAGCAAGAGTGCAAGAGTGCAAGAGAGAGAGAACAA  450

seq1  GAAAGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGAGAGAATGGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGAGAGAATGGCAAA  500

seq1  ACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCC  550

seq1  CTGATTGGCTGCAGCCCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGGCTGCAGCCCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAA  600

seq1  CACATGGCGGGAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCGGGAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACCACT  650

seq1  TAGAACAAGCTGTCAGCGCCATCTTGTAATGGCAAATGTGAGGGCGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAGCTGTCAGCGCCATCTTGTAATGGCAAATGTGAGGGCGGCTT  700

seq1  CCTACAATATACCAAAAAGAAACATTTATCAGATTCATACAAGTCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAATATACCAAAAAGAAACATTTATCAGATTCATACAAGTCTTTCT  750

seq1  ATGGCAAAAATATAAATAAGACATTAATTTCATTTTGTTAGAAATTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAAAATATAAATAAGACATTAATTTCATTTTGTTAGAAATTTTCA  800

seq1  AAGTGAGGTATTTTTGAGATTCTTTTCTCTGAAACGTCTTTGGTTATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGTATTTTTGAGATTCTTTTCTCTGAAACGTCTTTGGTTATCTT  850

seq1  TCTACACTTCCAATTTATTAATTAATGTCTTTCGGGTGTGTTCTTTGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACTTCCAATTTATTAATTAATGTCTTTCGGGTGTGTTCTTTGAGA  900

seq1  TAAGCCTCTCCTAACCATAACAACAGCAACATTAAAACATTATATTTCAT  950
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  TAAGCCTCTCCTAACCATAACAACAGCAACATTAAAACA-TATATTTC-T  948

seq1  TTTCCTTTTACTTAGAATTTAGTTCTACTTTCTAACTATGTTTCATTAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTACTTAGAATTTAGTTCTACTTTCTAACTATGTTTCATTAAC  998

seq1  ATTAG-TTTTTGTTATTGACTTTTCTTTTTTTTACTGATGACAAAGAAAA  1049
      ||||| |||||||||||||||||||||||||||||||||||||| |  ||
seq2  ATTAGTTTTTTGTTATTGACTTTTCTTTTTTTTACTGATGACAAGG--AA  1046

seq1  ATCACCAATTTTTATGTAATATATTAGAAATTATTCTAAACATGCTGTAA  1099
      |||||| |||||||||| ||||||||| ||||||||||||||||||||||
seq2  ATCACC-ATTTTTATGT-ATATATTAG-AATTATTCTAAACATGCTGTAA  1093

seq1  AGGAAACCAGCAGCCAATTTACTTGTAAATG-ATACTAATTTCTTTTTAC  1148
       ||||||  |||||||  |||||  |||||| ||||||||||| ||||||
seq2  GGGAAACAGGCAGCCA--TTACTGTTAAATGAATACTAATTTC-TTTTAC  1140

seq1  T-CACAAATATGGAAGCCATTGGAAAATTAATTTTCTGTATGAATAACAA  1197
      | |||||   ||||||||||||| ||||  | |||||||||||||| |  
seq2  TCCACAATATTGGAAGCCATTGG-AAATGTAGTTTCTGTATGAATACC--  1187

seq1  AACCAAAATTTTCCAAG  1214
      |||||||  | ||||||
seq2  AACCAAA--TGTCCAAG  1202