BAC Information

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BAC

Clone NameB6Ng01-102G20
Chromosome15 (Build37)
Map Location 96,418,940 - 96,428,053
singlet/doubletdoublet
Overlap geneSlc38a1
Upstream geneDbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip
Downstream geneSlc38a2, LOC667941, LOC546651, Slc38a4, Amigo2, BC038822, LOC100043354, LOC100042774
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102G20.bB6Ng01-102G20.g
ACCDH911325DH911326
length1,084856
definitionDH911325|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G20, 5' end.DH911326|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,426,938 - 96,428,053)(96,418,940 - 96,419,799)
sequence
gaattctgaactcccagtcctcaggtataaacaggttactcacccagccc
tctccccaactcctgcctatacaatctttacacactgtagaagtctaaac
aacaatcgcgcgcggtcacgatcattcagaagattgtggagggcaggtgt
atcccccaaggactgaatgtgagaatattttcgtgcctctgaagggctcg
atcagcctcctagagtaagtggataaacagcgcatttacatacagctgct
gctggacaaagctccagctttgtccttcgaagtcacaagacgaggtcaac
ccttgaggtaagtgtgaccagcctggtcacaggactgtctgaggcagata
ggtgtgtcttgattttaccaagatagcagtgtagtctctcacacaacttg
cagacaagaccctaattgtgagttctttgattcttagctagtttgtatgt
gggagttgagcatggatagatgaatgaaaccatcagctgcctgacctgta
gtctactatgaagactcgtagtaaagcactaagacaggaggaggtttctg
gctgctgggtggaaagaggatccccacaagagaagggagatgggctgact
attgccttaggacaggcttgcctgtagaaatgaagggtgcctcctgctgg
gtagacaggagtcacaagacaacaggtgaccggcctgtctgacctgcagg
tttgggcttgcatagttggctaatgggtgggcatttcaggagatctgact
ctgtgcccaccagtggtctggagaaaagaaggcacacagcagacgggagc
agaggaggtgaacagtatagagtagggaggatttccgagccttgagagat
caagtggaacacacaagcatgtggagttttacactttgatagacaagata
gagcggggtaaacttagcctaatctcacaaacaaacctaaatataaaaaa
aaaagaaatgaagagtgttacgactgcagaaaagtaatctcaaatggtgt
atttttaaaagtgtccactcagaaaatagatctgtcgatgctttgcgcct
ttagaacaaagtgacgcatgtcttctttgtgctg
gaattcacagtgagtagcgatgtaactcagtagtggaccatttgggtagc
acacatcaggtcttgagtttgatccccaataccacaagacaaataacaaa
acagaagacaacgcaacttagtgggagattttcattttctgggcttttct
tacagaagactgtaagctgtgctactgaaaatgctgagtctactctggtt
ccagagcctcctcttccccgctccagctcagggaaaaggcttctcagagg
gctgcaccacgctcttgatctcatgttgacaccagccctcgttaacagtt
ccggtctacggtctacttcctcctatcctaacgaacgcaagcaaagctgt
ccgttttccgctcccgactcgtcggggactggacagcccgtgacagaggc
cagatctttctttgctcacccaggttcttcaagagacacagcggaaggat
tatgccaaaggtcaccatcaccaccaacactcggccatcgacgtaccagg
ctctggaaggcagggaagggccaggttatggtcttcaactggaaaatgac
atggtggatcccaccgtgactttactatttgcctcattcccatgtgactg
atggaaggggctccccttccccactggctaaatgtagcattcctatgaat
tatttatgaatcatggcttcaaagccaactacgcacggggcattctgtca
ggttacaacttgtcccatcaatcatttaaagagaaaattctttctgtttt
gtttgtatgatatcagcaagaaaggagtagccacaggtaggccaccctcc
ctcctcgatcctttgaatttgaccttgaatacaacagggggtgggggtgg
gggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_96426938_96428053
seq2: B6Ng01-102G20.b_45_1128 (reverse)

seq1  CAGCACAAAGAAAGACATGCTGTCACTTTTTGTCTAAAGGGCGCAAAGCA  50
      |||||||||| ||||||||| |||||||| | |||||| |||||||||||
seq2  CAGCACAAAG-AAGACATGC-GTCACTTTGT-TCTAAA-GGCGCAAAGCA  46

seq1  TCGACAGGATTCTTAATTTTCTGAGTTGGACACCTTTTTAAAAAATACAA  100
      |||||||   |||  |||||||||| |||||||   ||| ||||||||| 
seq2  TCGACAG--ATCT--ATTTTCTGAG-TGGACAC---TTTTAAAAATACA-  87

seq1  CCCATTTTGAGATTAACTTTTCTGGCAGTCGTAACAACTTCTTCATTTTT  150
       ||| ||||||||| |||||||| ||||||||||||   ||||||     
seq2  -CCA-TTTGAGATT-ACTTTTCT-GCAGTCGTAACA--CTCTTCA-----  126

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTGTTTTGTTGAGATTAGGC  200
            ||| |||||||||| | ||| | |||||||   |||||||||||
seq2  ------TTTCTTTTTTTTTTATATTTAGGTTTGTTT--GTGAGATTAGGC  168

seq1  TAAGTTTACCCCGCTCTATCTTGTCTATCAAAGTGTAAAACTCCACATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTACCCCGCTCTATCTTGTCTATCAAAGTGTAAAACTCCACATGC  218

seq1  TTGTGTGTTCCACTTGATCTCTCAAGGCTCGGAAATCCTCCCTACTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTTCCACTTGATCTCTCAAGGCTCGGAAATCCTCCCTACTCTAT  268

seq1  ACTGTTCACCTCCTCTGCTCCCGTCTGCTGTGTGCCTTCTTTTCTCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCACCTCCTCTGCTCCCGTCTGCTGTGTGCCTTCTTTTCTCCAGA  318

seq1  CCACTGGTGGGCACAGAGTCAGATCTCCTGAAATGCCCACCCATTAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGTGGGCACAGAGTCAGATCTCCTGAAATGCCCACCCATTAGCCA  368

seq1  ACTATGCAAGCCCAAACCTGCAGGTCAGACAGGCCGGTCACCTGTTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCAAGCCCAAACCTGCAGGTCAGACAGGCCGGTCACCTGTTGTCT  418

seq1  TGTGACTCCTGTCTACCCAGCAGGAGGCACCCTTCATTTCTACAGGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCCTGTCTACCCAGCAGGAGGCACCCTTCATTTCTACAGGCAAG  468

seq1  CCTGTCCTAAGGCAATAGTCAGCCCATCTCCCTTCTCTTGTGGGGATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTAAGGCAATAGTCAGCCCATCTCCCTTCTCTTGTGGGGATCCT  518

seq1  CTTTCCACCCAGCAGCCAGAAACCTCCTCCTGTCTTAGTGCTTTACTACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACCCAGCAGCCAGAAACCTCCTCCTGTCTTAGTGCTTTACTACG  568

seq1  AGTCTTCATAGTAGACTACAGGTCAGGCAGCTGATGGTTTCATTCATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCATAGTAGACTACAGGTCAGGCAGCTGATGGTTTCATTCATCTA  618

seq1  TCCATGCTCAACTCCCACATACAAACTAGCTAAGAATCAAAGAACTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTCAACTCCCACATACAAACTAGCTAAGAATCAAAGAACTCACA  668

seq1  ATTAGGGTCTTGTCTGCAAGTTGTGTGAGAGACTACACTGCTATCTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGTCTTGTCTGCAAGTTGTGTGAGAGACTACACTGCTATCTTGGT  718

seq1  AAAATCAAGACACACCTATCTGCCTCAGACAGTCCTGTGACCAGGCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAGACACACCTATCTGCCTCAGACAGTCCTGTGACCAGGCTGGT  768

seq1  CACACTTACCTCAAGGGTTGACCTCGTCTTGTGACTTCGAAGGACAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTACCTCAAGGGTTGACCTCGTCTTGTGACTTCGAAGGACAAAGC  818

seq1  TGGAGCTTTGTCCAGCAGCAGCTGTATGTAAATGCGCTGTTTATCCACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTTTGTCCAGCAGCAGCTGTATGTAAATGCGCTGTTTATCCACTT  868

seq1  ACTCTAGGAGGCTGATCGAGCCCTTCAGAGGCACGAAAATATTCTCACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGGAGGCTGATCGAGCCCTTCAGAGGCACGAAAATATTCTCACAT  918

seq1  TCAGTCCTTGGGGGATACACCTGCCCTCCACAATCTTCTGAATGATCGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTTGGGGGATACACCTGCCCTCCACAATCTTCTGAATGATCGTG  968

seq1  ACCGCGCGCGATTGTTGTTTAGACTTCTACAGTGTGTAAAGATTGTATAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCGCGCGATTGTTGTTTAGACTTCTACAGTGTGTAAAGATTGTATAG  1018

seq1  GCAGGAGTTGGGGAGAGGGCTGGGTGAGTAACCTGTTTATACCTGAGGAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTTGGGGAGAGGGCTGGGTGAGTAACCTGTTTATACCTGAGGAC  1068

seq1  TGGGAGTTCAGAATTC  1116
      ||||||||||||||||
seq2  TGGGAGTTCAGAATTC  1084

seq1: chr15_96418940_96419799
seq2: B6Ng01-102G20.g_69_924

seq1  GAATTCACAGTGAGTAGCGATGTAACTCAGTAGTGGACCATTTGGGTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGAGTAGCGATGTAACTCAGTAGTGGACCATTTGGGTAGC  50

seq1  ACACATCAGGTCTTGAGTTTGATCCCCAATACCACAAGACAAATAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCAGGTCTTGAGTTTGATCCCCAATACCACAAGACAAATAACAAA  100

seq1  ACAGAAGACAACGCAACTTAGTGGGAGATTTTCATTTTCTGGGCTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGACAACGCAACTTAGTGGGAGATTTTCATTTTCTGGGCTTTTCT  150

seq1  TACAGAAGACTGTAAGCTGTGCTACTGAAAATGCTGAGTCTACTCTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGACTGTAAGCTGTGCTACTGAAAATGCTGAGTCTACTCTGGTT  200

seq1  CCAGAGCCTCCTCTTCCCCGCTCCAGCTCAGGGAAAAGGCTTCTCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCTCCTCTTCCCCGCTCCAGCTCAGGGAAAAGGCTTCTCAGAGG  250

seq1  GCTGCACCACGCTCTTGATCTCATGTTGACACCAGCCCTCGTTAACAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCACGCTCTTGATCTCATGTTGACACCAGCCCTCGTTAACAGTT  300

seq1  CCGGTCTACGGTCTACTTCCTCCTATCCTAACGAACGCAAGCAAAGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCTACGGTCTACTTCCTCCTATCCTAACGAACGCAAGCAAAGCTGT  350

seq1  CCGTTTTCCGCTCCCGACTCGTCGGGGACTGGACAGCCCGTGACAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTTCCGCTCCCGACTCGTCGGGGACTGGACAGCCCGTGACAGAGGC  400

seq1  CAGATCTTTCTTTGCTCACCCAGGTTCTTCAAGAGACACAGCGGAAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTTCTTTGCTCACCCAGGTTCTTCAAGAGACACAGCGGAAGGAT  450

seq1  TATGCCAAAGGTCACCATCACCACCAACACTCGGCCATCGACGTACCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAAAGGTCACCATCACCACCAACACTCGGCCATCGACGTACCAGG  500

seq1  CTCTGGAAGGCAGGGAAGGGCCAGGTTATGGTCTTCAACTGGAAAATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAGGCAGGGAAGGGCCAGGTTATGGTCTTCAACTGGAAAATGAC  550

seq1  ATGGTGGATCCCACCGTGACTTTACTATTTGCCTCATTCCCATGTGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGATCCCACCGTGACTTTACTATTTGCCTCATTCCCATGTGACTG  600

seq1  ATGGAAGGGGCTCCCCTTCCCCACTGGCTAAATGTAGCATTCCTATGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGGGGCTCCCCTTCCCCACTGGCTAAATGTAGCATTCCTATGAAT  650

seq1  TATTTATGAATCATGGCTTCAAAGCCAACTACGCACGGGGCATTCTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGAATCATGGCTTCAAAGCCAACTACGCACGGGGCATTCTGTCA  700

seq1  GGTTACAACTTGTCCCATCAATCATTTAAAGAGAAAATTCTTTCTGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAACTTGTCCCATCAATCATTTAAAGAGAAAATTCTTTCTGTTTT  750

seq1  GTTTGTATGATATCAGCAAGAAAGGAGTAGCCACAGGTAGGCCACCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATGATATCAGCAAGAAAGGAGTAGCCACAGGTAGGCCACCCTCC  800

seq1  CTCCTCGATCCTTTGAATTTGACCTTGAATACAACAGGGGGTGGGGTGGG  850
      |||||||||||||||||||||||||||||||||||||||||||    |||
seq2  CTCCTCGATCCTTTGAATTTGACCTTGAATACAACAGGGGGTG----GGG  846

seq1  GTGGGGGTGG  860
      ||||||||||
seq2  GTGGGGGTGG  856