BAC Information

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BAC

Clone NameB6Ng01-102J04
ChromosomeY (Build37)15 (Build37)
Map Location 1,544,546 - 1,544,79797,375,789 - 97,376,931
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
Downstream geneLOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102J04.bB6Ng01-102J04.g
ACCDH911426DH911427
length7501,132
definitionDH911426|Mus musculus domesticus DNA, BAC clone: B6Ng01-102J04, 5' end.DH911427|Mus musculus domesticus DNA, BAC clone: B6Ng01-102J04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,544,546 - 1,544,797)(97,375,789 - 97,376,931)
sequence
gaattctcaacaatggttcagtaatagctgtgaatggaagtccaaggatc
tagcagttactcagtctcacacagcaagcaggcgaaggagcaagagcaag
actcccttcttccaatgtccttatattgtctccagcagaaggtgtagccc
agattaaaggtgtgttccaccacacccttaatcctggatgaccttgaatt
tggagatttaatcttttggaatccatagccactggctcaagatctccata
ccaagatccagatcagaaacttctatctccaagcctccagataagggtcc
ctggtgagccttccaattctggattgtagttcattccaaatatagtcaag
ttgacaaccaggaatagccactacaggcatgcagcaaaacactcatacac
ataaaataaaaattaataaatctcaacattaaaaaaaatgtatgctgggt
gtggtggcacactcctttaatcccagcactcaggaggcagaggcaggaag
atttctgagttcaaggacagcctggtctacagagtgagttccaggacagt
cagggctacagagaaactctgtctcgaaaaaccaaccaacaaacaaaatg
tgcattatatttaggtgtattgatgctacttaagagagggctgtgtaaaa
gactgacttggagctggctatgtcagtgcacgcctgtgatctcacctctt
cgaaggtgcgggttggaggaccatcaatgctgcctcagccacttagtgag

gaattcactggtgttccaatcccactcaggagctcaaatatccagtggct
aagatgggtcagtccttcagagttctcctcatagaactttattttgggcg
actagaatgtctggaactctgtgagtcaagaaaaagccccagcagaggat
tttggctgttggatggactgtcttgcacgctgaggacatgcgggtatccc
ggaataaggagtgtaggtagctgtaggtcactcttcagtggaactatcag
cttaaaaagagactggtgacagactggggagatggcttagtggttaagag
cactggttgttcttccagaagacctgtgtttgattcccagcacccacaga
tagttcttgttccaggggatccaacaccctcctacagatatacatgcaag
caaaatagtaatgcacataaaataaaaataaattatttttttcagagggg
attggtgtacatagctcccgctgagggtccgaacacacccttgcagagct
gacatggcgaggcccgtgttttctgaacctgcggctgacccacttcagag
tcttgcttgtactctctagagtctgtgatcggctgcctattaattaaggc
tcaaaatcaacgtggcttaggaggctcacatagcctttgcccaagacttt
tatttctcatgtttgtttgttcttatccaaatcactgctctggctggcct
gggtctctgtgttaggtctctgatgacaagcaggaagtttagattgacca
gaaccgtacagtgagctttcccctccgccatccttgctcacctccagata
tagagagcagactatggtgtctacacacaagtataagaacactaaagctc
aagaagatgagttctggggctggtcattgccttcgtgaacgttttacatg
actgtaataccaaccactcgagccaaacacttaggtcaaaggcatagttc
attaggtcaaatgtcaaaggtcataagacccaccccatttttggggggac
acatacttcgagtttgggacttcatgctactttcacttctgaatgcttgg
ctatagtacagttctatgacctcctcatgtcaataatttacatatacgac
tcgcatccaggggaacctggtcttcacttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1544546_1544797
seq2: B6Ng01-102J04.b_182_410

seq1  CCCAGATTAAAGGTGTGTTCCACCACACCTTTAATCCCAGATGAAAGGTG  50
      ||||||||||||||||||||||||||||| |||||||  |||||      
seq2  CCCAGATTAAAGGTGTGTTCCACCACACCCTTAATCCTGGATGA------  44

seq1  TAGCCCAGATTAAAGGTGTGTTCCTTAAACTCGGAGATTCAATCTTCTGG  100
                            |||| || | ||||||| |||||| |||
seq2  ----------------------CCTTGAATTTGGAGATTTAATCTTTTGG  72

seq1  AATCCATAGCCACTATGGCTCAAGATCTCCATACCAAGATCCAGATAAG-  149
      |||||||||||||  ||||||||||||||||||||||||||||||| || 
seq2  AATCCATAGCCAC--TGGCTCAAGATCTCCATACCAAGATCCAGATCAGA  120

seq1  ------GATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAAT  193
             ||||||||||||||||||||||||| |||||||||||||||||
seq2  AACTTCTATCTCCAAGCCTCCAGATAAGGGTCCCTGGTGAGCCTTCCAAT  170

seq1  TCCGGATTGTAGTTCATTCCAAATATTGTCAAGTTGACAACCAGGAATAG  243
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTGGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAACCAGGAATAG  220

seq1  CCACTACAG  252
      |||||||||
seq2  CCACTACAG  229

seq1: chr15_97375789_97376931
seq2: B6Ng01-102J04.g_69_1200

seq1  GAATTCACTGGTGTTCCAATCCCACTCAGGAGCTCAAATATCCAGTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTGTTCCAATCCCACTCAGGAGCTCAAATATCCAGTGGCT  50

seq1  AAGATGGGTCAGTCCTTCAGAGTTCTCCTCATAGAACTTTATTTTGGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGTCAGTCCTTCAGAGTTCTCCTCATAGAACTTTATTTTGGGCG  100

seq1  ACTAGAATGTCTGGAACTCTGTGAGTCAAGAAAAAGCCCCAGCAGAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATGTCTGGAACTCTGTGAGTCAAGAAAAAGCCCCAGCAGAGGAT  150

seq1  TTTGGCTGTTGGATGGACTGTCTTGCACGCTGAGGACATGCGGGTATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTGTTGGATGGACTGTCTTGCACGCTGAGGACATGCGGGTATCCC  200

seq1  GGAATAAGGAGTGTAGGTAGCTGTAGGTCACTCTTCAGTGGAACTATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGGAGTGTAGGTAGCTGTAGGTCACTCTTCAGTGGAACTATCAG  250

seq1  CTTAAAAAGAGACTGGTGACAGACTGGGGAGATGGCTTAGTGGTTAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAGAGACTGGTGACAGACTGGGGAGATGGCTTAGTGGTTAAGAG  300

seq1  CACTGGTTGTTCTTCCAGAAGACCTGTGTTTGATTCCCAGCACCCACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTGTTCTTCCAGAAGACCTGTGTTTGATTCCCAGCACCCACAGA  350

seq1  TAGTTCTTGTTCCAGGGGATCCAACACCCTCCTACAGATATACATGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTGTTCCAGGGGATCCAACACCCTCCTACAGATATACATGCAAG  400

seq1  CAAAATAGTAATGCACATAAAATAAAAATAAATTATTTTTTTCAGAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGTAATGCACATAAAATAAAAATAAATTATTTTTTTCAGAGGGG  450

seq1  ATTGGTGTACATAGCTCCCGCTGAGGGTCCGAACACACCCTTGCAGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGTACATAGCTCCCGCTGAGGGTCCGAACACACCCTTGCAGAGCT  500

seq1  GACATGGCGAGGCCCGTGTTTTCTGAACCTGCGGCTGACCCACTTCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGCGAGGCCCGTGTTTTCTGAACCTGCGGCTGACCCACTTCAGAG  550

seq1  TCTTGCTTGTACTCTCTAGAGTCTGTGATCGGCTGCCTATTAATTAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTGTACTCTCTAGAGTCTGTGATCGGCTGCCTATTAATTAAGGC  600

seq1  TCAAAATCAACGTGGCTTAGGAGGCTCACATAGCCTTTGCCCAAGACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATCAACGTGGCTTAGGAGGCTCACATAGCCTTTGCCCAAGACTTT  650

seq1  TATTTCTCATGTTTGTTTGTTCTTATCCAAATCACTGCTCTGGCTGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCATGTTTGTTTGTTCTTATCCAAATCACTGCTCTGGCTGGCCT  700

seq1  GGGTCTCTGTGTTAGGTCTCTGATGACAAGCAGGAAGTTTAGATTGACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTGTGTTAGGTCTCTGATGACAAGCAGGAAGTTTAGATTGACCA  750

seq1  GAACCGTACAGTGAGCTTTCCCCTCCGCCATCCTTGCTCACCTCCAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGTACAGTGAGCTTTCCCCTCCGCCATCCTTGCTCACCTCCAGATA  800

seq1  TAGAGAGCAGACTATGGTGTCTACACACAAAGTATAAGAACACTAAAAGC  850
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  TAGAGAGCAGACTATGGTGTCTACACAC-AAGTATAAGAACACT-AAAGC  848

seq1  TCAGGAAGATGAGTTCTGGGGCTGGTCATTGCCTTCGTGAACGTTTTACC  900
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAAGAAGATGAGTTCTGGGGCTGGTCATTGCCTTCGTGAACGTTTTA-C  897

seq1  ATGACTGTAATACCAACCACTCGAGCCAAACACTTAGGTCAAAGGCATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTAATACCAACCACTCGAGCCAAACACTTAGGTCAAAGGCATAG  947

seq1  TTCATAAGGTCAAAAGGTCAAAGGTCATAAGACCCCACCCCATTTTTGGG  1000
      ||||| ||||| ||| |||||||||||||||| |||||||||||||| ||
seq2  TTCATTAGGTC-AAATGTCAAAGGTCATAAGA-CCCACCCCATTTTT-GG  994

seq1  GGGGACACA-ATCTCGAGTTTGGGAACCTCAATGCTACCTTCACTTCTGA  1049
      ||||||||| |  ||||||||||||  ||  ||||||| |||||||||||
seq2  GGGGACACATACTTCGAGTTTGGGA--CTTCATGCTACTTTCACTTCTGA  1042

seq1  TGAGCTGGCTATAGTTACAGGTTCCTATGACCTGCTTCATGTTCAATAAT  1099
           ||||||||| |||||  | ||||||||| | ||||| ||||||||
seq2  ATGCTTGGCTATAG-TACAG--TTCTATGACCT-CCTCATG-TCAATAAT  1087

seq1  TCACTATA-ACGACTCGTCAAACCCAGGGGAACCTGGT----ACTTACA  1143
      | || ||| ||||||||    | |||||||||||||||    |||||||
seq2  TTAC-ATATACGACTCG---CATCCAGGGGAACCTGGTCTTCACTTACA  1132