BAC Information

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BAC

Clone NameB6Ng01-103A11
Chromosome15 (Build37)
Map Location 52,847,206 - 52,965,297
singlet/doubletdoublet
Overlap geneExt1
Upstream geneAard, LOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6, LOC100039745
Downstream geneSamd12, EG665097, EG621631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103A11.bB6Ng01-103A11.g
ACCDH911745DH911746
length1,1171,054
definitionDH911745|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A11, 5' end.DH911746|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,847,206 - 52,848,324)(52,964,230 - 52,965,297)
sequence
gaattcatgagcttgcatgaagtcgtcctaatgaacctgtgctgcctggc
tgtatggtgcgtagatatattcaataaggacagaagtcctgaaatattag
gcccacccatctgttgctttttttgcttctacaggatgcctttagtttca
aattttcacagtttaagctacagctcctgccccaggtatatctctgagaa
attgtttccagaacgatctgaacagtgactaaaatgaaatgaagtgaaat
gaaatgaaataccctacagcagccgagccataaatgaggagttgggtgct
ggtgggcagaggaaaggagagtaagctctctcagacacgattttacctgc
gtcattccacactgcaggatgcttcagtgtcctctcaacacaagtctcct
tatagacagaagaaaacagtaggtcagaaagatgcatttaagaaagagaa
gtcccatgttggtagtatgctgcatagtacatagtacatatagtacagga
ctgtcttcaactacatcttaaggcttcagaagttaagaaccagttagttg
ttcacagacgagacctgacaggtctgggcttctggatgtatcccagatct
actgatctaccgcactgtgaaaggagtgtttacaattagaaggtggctgg
gctgttaaaggttcaccaccgaaatgtcaaatggacagttctggagtagg
aacgttcagcctcttctactctttctccagtcactacttttcatgttcat
gtcagaatgctaacaaagtctttctcttttcacctctacaaggcgggcag
aaaacaggctatttaccacacttagagacaaagggacccaaggccctaat
gataaacatgacacaggatggcattcaccccagcccaggcagaagccctc
cagacacctggctttttctcttcatcatcctgatcagctgatcctgccag
cagtgccaggaggactctttccagtcagcccatctctccgggtccttcgc
ttcattctcctgactattttacattctgagccttgcctggttttttcagt
ctctcataaagaaagttgttacagtagaattgggtgcctctgactgcctc
ataactccatcttagac
gaattcctagatccacacatgaagtgtcatggatggcctggagaatggtg
cccagtggcataaacactctggtcagataccgatggaggtgatcagtctc
acctaagcctaaagggcaatgcatttgagggaagaaaacagcagttatct
atattgacctacaagatacgatagatggttgctggtaaggtctgcctgga
ctctgtcttgaagatgatcattctggagcaagcatgctcttggctagtgc
tgattgctgagtgccagggcctacgcctaggatgggagggtttggtgcct
gggattgccacagagtccacttaaaaattgagtcatagatgctaatgatg
tcagccatgtgttggagaccctgagtatattcttttttaaagattggcca
gttctggatgtgtgtgttgaaggtaacctgaaaatcaaatttgtcttgtc
tctcccctgggggctttgaagatttcaagtatcagaaccagtaagctatg
gtgttgctaataaaaattgcttatgagttgttcgcttggggtagtaagta
ggcttatttatagaacagccctgagcctccccatgggcaagaaggctttt
tactaaagcaagatcatgaggtagagaaagggcaatgttgagggacaggg
tatatcttaaggagtcttagacttactgatggctactaggaggctgtcaa
acttttacccctgaggcttccatccggctccgttgctggtggctgcaaat
ctctttcatatggccatttgcaattcggtggagtgtttggaacgagctag
ttaatcccagtccaattcataatggggcaggtagccaattcacacaaacc
accttgacaatccacactaattgctttgtctccacggagcagctagaaat
tgaattgcctgcagagatgaacatttcctactttctaccccttctcagct
cccctctctgtcattcccaccttgggtaccccagctgaaccctacactgc
tgctgctgtgatgtgattttttttttttttttgattaatagccaacatcc
ttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_52847206_52848324
seq2: B6Ng01-103A11.b_46_1162

seq1  GAATTCATGAGCTTGCATGAAGTCGTCCTAATGAACCTGTGCTGCCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGCTTGCATGAAGTCGTCCTAATGAACCTGTGCTGCCTGGC  50

seq1  TGTATGGTGCGTAGATATATTCAATAAGGACAGAAGTCCTGAAATATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTGCGTAGATATATTCAATAAGGACAGAAGTCCTGAAATATTAG  100

seq1  GCCCACCCATCTGTTGCTTTTTTTGCTTCTACAGGATGCCTTTAGTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCCATCTGTTGCTTTTTTTGCTTCTACAGGATGCCTTTAGTTTCA  150

seq1  AATTTTCACAGTTTAAGCTACAGCTCCTGCCCCAGGTATATCTCTGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCACAGTTTAAGCTACAGCTCCTGCCCCAGGTATATCTCTGAGAA  200

seq1  ATTGTTTCCAGAACGATCTGAACAGTGACTAAAATGAAATGAAGTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCCAGAACGATCTGAACAGTGACTAAAATGAAATGAAGTGAAAT  250

seq1  GAAATGAAATACCCTACAGCAGCCGAGCCATAAATGAGGAGTTGGGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAATACCCTACAGCAGCCGAGCCATAAATGAGGAGTTGGGTGCT  300

seq1  GGTGGGCAGAGGAAAGGAGAGTAAGCTCTCTCAGACACGATTTTACCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCAGAGGAAAGGAGAGTAAGCTCTCTCAGACACGATTTTACCTGC  350

seq1  GTCATTCCACACTGCAGGATGCTTCAGTGTCCTCTCAACACAAGTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCCACACTGCAGGATGCTTCAGTGTCCTCTCAACACAAGTCTCCT  400

seq1  TATAGACAGAAGAAAACAGTAGGTCAGAAAGATGCATTTAAGAAAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACAGAAGAAAACAGTAGGTCAGAAAGATGCATTTAAGAAAGAGAA  450

seq1  GTCCCATGTTGGTAGTATGCTGCATAGTACATAGTACATATAGTACAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGTTGGTAGTATGCTGCATAGTACATAGTACATATAGTACAGGA  500

seq1  CTGTCTTCAACTACATCTTAAGGCTTCAGAAGTTAAGAACCAGTTAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCAACTACATCTTAAGGCTTCAGAAGTTAAGAACCAGTTAGTTG  550

seq1  TTCACAGACGAGACCTGACAGGTCTGGGCTTCTGGATGTATCCCAGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGACGAGACCTGACAGGTCTGGGCTTCTGGATGTATCCCAGATCT  600

seq1  ACTGATCTACCGCACTGTGAAAGGAGTGTTTACAATTAGAAGGTGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCTACCGCACTGTGAAAGGAGTGTTTACAATTAGAAGGTGGCTGG  650

seq1  GCTGTTAAAGGTTCACCACCGAAATGTCAAATGGACAGTTCTGGAGTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAAAGGTTCACCACCGAAATGTCAAATGGACAGTTCTGGAGTAGG  700

seq1  AACGTTCAGCCTCTTCTACTCTTTCTCCAGTCACTACTTTTCATGTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTCAGCCTCTTCTACTCTTTCTCCAGTCACTACTTTTCATGTTCAT  750

seq1  GTCAGAATGCTAACAAAGTCTTTCTCTTTTCACCTCTACAAGGCGGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATGCTAACAAAGTCTTTCTCTTTTCACCTCTACAAGGCGGGCAG  800

seq1  AAAACAGGCTATTTACCACACTTAGAGACAAAGGGACCCAAGGCCCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGCTATTTACCACACTTAGAGACAAAGGGACCCAAGGCCCTAAT  850

seq1  GATAAACATGACACAGGATGGCATTCACCCCAGCCCAGGCAGAAGCCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACATGACACAGGATGGCATTCACCCCAGCCCAGGCAGAAGCCCTC  900

seq1  CAGACACCTGGCTTTTTCTCTTCATCATCCTGATCAGCTGATCCTGCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCTGGCTTTTTCTCTTCATCATCCTGATCAGCTGATCCTGCCAG  950

seq1  CAGTGCCAGGAGGACTCTTTCCAGTCAGCCCATCTCTCCGGGTCCTTCGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCAGGAGGACTCTTTCCAGTCAGCCCATCTCTCCGGGTCCTTCGC  1000

seq1  TTCATTCTTCCTGACTATTTTACATTCTGAGCCTTGCCTGGTTTTTTTCA  1050
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCATTC-TCCTGACTATTTTACATTCTGAGCCTTGCCTGG-TTTTTTCA  1048

seq1  GTCTCTCATAAAGGAAAGTTGTTACAGTAGAATTGAGTGCCTCTGACTGC  1100
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  GTCTCTCATAAA-GAAAGTTGTTACAGTAGAATTGGGTGCCTCTGACTGC  1097

seq1  CTCATTACT-CATCTTAGAC  1119
      ||||| ||| ||||||||||
seq2  CTCATAACTCCATCTTAGAC  1117

seq1: chr15_52964230_52965297
seq2: B6Ng01-103A11.g_69_1122 (reverse)

seq1  AGAAGGATGTGTGCTATTTAATACCAAAAAAAAAAAAAAAATCACAATCA  50
      ||||||||||  |||| |||||  ||||||||||||||||||||| ||||
seq2  AGAAGGATGTTGGCTA-TTAAT--CAAAAAAAAAAAAAAAATCAC-ATCA  46

seq1  CAGCAAGCAGCCAAGTGTAGGGTTTCAGCTGGGGGTACCCAAGGGTGGGA  100
      |||| ||||||  ||||||||| ||||||| ||||||||||| |||||||
seq2  CAGC-AGCAGC--AGTGTAGGG-TTCAGCT-GGGGTACCCAA-GGTGGGA  90

seq1  ATGGACAGAGAGGGGGAGCTGGAAGAAAGGGGTAGAAAGTAGGAAATGTT  150
      || |||||||| |||||||||  || ||||||||||||||||||||||||
seq2  AT-GACAGAGA-GGGGAGCTG--AG-AAGGGGTAGAAAGTAGGAAATGTT  135

seq1  CATCTCTGCAGGCAATTCAATTTCTAGCTGCTCCGTGGAGACAAAGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGCAGGCAATTCAATTTCTAGCTGCTCCGTGGAGACAAAGCAAT  185

seq1  TAGTGTGGATTGTCAAGGTGGTTTGTGTGAATTGGCTACCTG-CCCATTA  249
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGTGTGGATTGTCAAGGTGGTTTGTGTGAATTGGCTACCTGCCCCATTA  235

seq1  TGAATTGGACTGGGATTAACTAGCTCGTTCCAAACACTCCACCGAATTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGGACTGGGATTAACTAGCTCGTTCCAAACACTCCACCGAATTGC  285

seq1  AAATGGCCATATGAAAGAGATTTGCAGCCACCAGCAACGGAGCCGGATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCATATGAAAGAGATTTGCAGCCACCAGCAACGGAGCCGGATGG  335

seq1  AAGCCTCAGGGGTAAAAGTTTGACAGCCTCCTAGTAGCCATCAGTAAGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCAGGGGTAAAAGTTTGACAGCCTCCTAGTAGCCATCAGTAAGTC  385

seq1  TAAGACTCCTTAAGATATACCCTGTCCCTCAACATTGCCCTTTCTCTACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTCCTTAAGATATACCCTGTCCCTCAACATTGCCCTTTCTCTACC  435

seq1  TCATGATCTTGCTTTAGTAAAAAGCCTTCTTGCCCATGGGGAGGCTCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCTTGCTTTAGTAAAAAGCCTTCTTGCCCATGGGGAGGCTCAGG  485

seq1  GCTGTTCTATAAATAAGCCTACTTACTACCCCAAGCGAACAACTCATAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTATAAATAAGCCTACTTACTACCCCAAGCGAACAACTCATAAG  535

seq1  CAATTTTTATTAGCAACACCATAGCTTACTGGTTCTGATACTTGAAATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTATTAGCAACACCATAGCTTACTGGTTCTGATACTTGAAATCT  585

seq1  TCAAAGCCCCCAGGGGAGAGACAAGACAAATTTGATTTTCAGGTTACCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCCCCAGGGGAGAGACAAGACAAATTTGATTTTCAGGTTACCTT  635

seq1  CAACACACACATCCAGAACTGGCCAATCTTTAAAAAAGAATATACTCAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACACACATCCAGAACTGGCCAATCTTTAAAAAAGAATATACTCAGG  685

seq1  GTCTCCAACACATGGCTGACATCATTAGCATCTATGACTCAATTTTTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAACACATGGCTGACATCATTAGCATCTATGACTCAATTTTTAAG  735

seq1  TGGACTCTGTGGCAATCCCAGGCACCAAACCCTCCCATCCTAGGCGTAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTGTGGCAATCCCAGGCACCAAACCCTCCCATCCTAGGCGTAGG  785

seq1  CCCTGGCACTCAGCAATCAGCACTAGCCAAGAGCATGCTTGCTCCAGAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCACTCAGCAATCAGCACTAGCCAAGAGCATGCTTGCTCCAGAAT  835

seq1  GATCATCTTCAAGACAGAGTCCAGGCAGACCTTACCAGCAACCATCTATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCTTCAAGACAGAGTCCAGGCAGACCTTACCAGCAACCATCTATC  885

seq1  GTATCTTGTAGGTCAATATAGATAACTGCTGTTTTCTTCCCTCAAATGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGTAGGTCAATATAGATAACTGCTGTTTTCTTCCCTCAAATGCA  935

seq1  TTGCCCTTTAGGCTTAGGTGAGACTGATCACCTCCATCGGTATCTGACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTTTAGGCTTAGGTGAGACTGATCACCTCCATCGGTATCTGACCA  985

seq1  GAGTGTTTATGCCACTGGGCACCATTCTCCAGGCCATCCATGACACTTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTATGCCACTGGGCACCATTCTCCAGGCCATCCATGACACTTCA  1035

seq1  TGTGTGGATCTAGGAATTC  1068
      |||||||||||||||||||
seq2  TGTGTGGATCTAGGAATTC  1054