BAC Information

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BAC

Clone NameB6Ng01-103B01
Chromosome15 (Build37)
Map Location 98,546,744 - 98,713,552
singlet/doubletdoublet
Overlap geneCcdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1
Upstream genePp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1
Downstream geneDhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103B01.bB6Ng01-103B01.g
ACCDH911771DH911772
length856597
definitionDH911771|Mus musculus domesticus DNA, BAC clone: B6Ng01-103B01, 5' end.DH911772|Mus musculus domesticus DNA, BAC clone: B6Ng01-103B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,546,744 - 98,547,598)(98,712,957 - 98,713,552)
sequence
gaattcacaggtatccacctgcctctgccttctgagtggtgggaataaag
gcatgggccacaggaactagtccctgcacttctagataagtcttggcttg
caaaggctggagagatggctcagtggctacaagctcctgcagtcctttca
gaggacccgggtttgagttctaacacccacataaggaactcataacggct
tgtaaccttttttttttaatataaataaataaataaataaataaataaat
aaacaaacatcttttattagatactcaagaatgttttttggggggttgtt
tgtttgtttttgttttgtttttaaaagatgtgtctatttattttatgtat
atgagtacactgtagctgtacagatggttgtgagccttcatgtggttgtt
ggaaattgaatttaggacctctgctcgctccagtcaaccctgctcgctca
gtccctgctcgctccagcacaaagatttatttattattatacataagtac
actgtagctgtcttcagatgcaccagaagaggatgtcagatctcattacc
ggtggttgtgagccacaccatgtggttgctgggatttgaactcagaacct
tctgaagagcagtcagtgctcttacctgctgagccaccttgccagcctct
gcttgtagctcttatatcaagaattctgagggtctctggccttctgaagc
acctgaagtacacttaacataaacttagaaagacatgcatacacaaattt
aaatcttcatgtctaaagactgaatgggagagctggcattcctaaaacca
ttaggaaatatgaggaaaatgccagatacctaaatctctctctctctgtg
tgtgtg
gaattcttagccgtggaaaacaaagaagtcctgggaagcatagcgttaag
tcacaattttgtattgtcgtggctaaataactgaaaaggagagagaggtt
cctttttggctcagaacttcatatggttagtctatgaccacttagctcta
agttcatgcgcagtctcacggatagtgggtgcgtgtgatggaagagtttg
ttcacggcagacagcaaaccaaagcaggcatgaagagtccagaatgaagc
agagccaggcatggtggcgcaagcctttaattccagcactcgggaggcag
aagcagagttcgaggccagcctggtctacagagtgagttccaggacagcc
agggctacacagagaaaccctgtcttggaaaaaacaaaaaacaaaaacca
aacaaaccagagtgaagcagagccttaggaacaccggccaccagcggcca
acttcctaggttctacctcaacgggatgaacccgctggttaatttgaagc
tgtccatgacatacatacttgtctccctaaggttttgtgcatatgtgtgt
gtgtgcatgtgtgtgtgtgtttttccggggactgcaaacaaggctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98546744_98547598
seq2: B6Ng01-103B01.b_44_899

seq1  GAATTCACAGGTATCCACCTGCCTCTGCCTTCTGAGTGGTGGGAATAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTATCCACCTGCCTCTGCCTTCTGAGTGGTGGGAATAAAG  50

seq1  GCATGGGCCACAGGAACTAGTCCCTGCACTTCTAGATAAGTCTTGGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGCCACAGGAACTAGTCCCTGCACTTCTAGATAAGTCTTGGCTTG  100

seq1  CAAAGGCTGGAGAGATGGCTCAGTGGCTACAAGCTCCTGCAGTCCTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGGAGAGATGGCTCAGTGGCTACAAGCTCCTGCAGTCCTTTCA  150

seq1  GAGGACCCGGGTTTGAGTTCTAACACCCACATAAGGAACTCATAACGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCCGGGTTTGAGTTCTAACACCCACATAAGGAACTCATAACGGCT  200

seq1  TGTAACCTTTTTTTTTTAATATAAATAAATAAATAAATAAATAAATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCTTTTTTTTTTAATATAAATAAATAAATAAATAAATAAATAAAT  250

seq1  AAACAAACATCTTTTATTAGATACTCAAGAATGTTTTTTGGGGGGTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACATCTTTTATTAGATACTCAAGAATGTTTTTTGGGGGGTTGTT  300

seq1  TGTTTGTTTTTGTTTTGTTTTTAAAAGATGTGTCTATTTATTTTATGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTGTTTTGTTTTTAAAAGATGTGTCTATTTATTTTATGTAT  350

seq1  ATGAGTACACTGTAGCTGTACAGATGGTTGTGAGCCTTCATGTGGTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTACACTGTAGCTGTACAGATGGTTGTGAGCCTTCATGTGGTTGTT  400

seq1  GGAAATTGAATTTAGGACCTCTGCTCGCTCCAGTCAACCCTGCTCGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGAATTTAGGACCTCTGCTCGCTCCAGTCAACCCTGCTCGCTCA  450

seq1  GTCCCTGCTCGCTCCAGCACAAAGATTTATTTATTATTATACATAAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGCTCGCTCCAGCACAAAGATTTATTTATTATTATACATAAGTAC  500

seq1  ACTGTAGCTGTCTTCAGATGCACCAGAAGAGGATGTCAGATCTCATTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGCTGTCTTCAGATGCACCAGAAGAGGATGTCAGATCTCATTACC  550

seq1  GGTGGTTGTGAGCCACACCATGTGGTTGCTGGGATTTGAACTCAGAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTGTGAGCCACACCATGTGGTTGCTGGGATTTGAACTCAGAACCT  600

seq1  TCTGAAGAGCAGTCAGTGCTCTTACCTGCTGAGCCACCTTGCCAGCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAGCAGTCAGTGCTCTTACCTGCTGAGCCACCTTGCCAGCCTCT  650

seq1  GCTTGTAGCTCTTATATCAAGAATTCTGAGGGTCTCTGGCCTTCTGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAGCTCTTATATCAAGAATTCTGAGGGTCTCTGGCCTTCTGAAGC  700

seq1  ACCTGAAGTACACTTAACATAAACTTAGAAAGACATGCATACACAAA-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCTGAAGTACACTTAACATAAACTTAGAAAGACATGCATACACAAATTT  750

seq1  AAATCTTCATGTCTAAAGACTGAATGGGAGAGCTGGCATTCCTAAAACCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCATGTCTAAAGACTGAATGGGAGAGCTGGCATTCCTAAAACCA  800

seq1  TTAGGAAATATGAGGAAAATGCCAGATACCTAAATCTCTCTCTCTCTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAATATGAGGAAAATGCCAGATACCTAAATCTCTCTCTCTCTGTG  850

seq1  TGTGTG  855
      ||||||
seq2  TGTGTG  856

seq1: chr15_98712957_98713552
seq2: B6Ng01-103B01.g_65_661 (reverse)

seq1  CCAGCCTTGTTTGCAGTCCCCAG-AACACACACACACACATGCACACACA  49
      ||||||||||||||||||||| | || |||||||||||||||||||||||
seq2  CCAGCCTTGTTTGCAGTCCCCGGAAAAACACACACACACATGCACACACA  50

seq1  CACATATGCACAAAACCTTAGGGAGACAAGTATGTATGTCATGGACAGCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGCACAAAACCTTAGGGAGACAAGTATGTATGTCATGGACAGCT  100

seq1  TCAAATTAACCAGCGGGTTCATCCCGTTGAGGTAGAACCTAGGAAGTTGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAACCAGCGGGTTCATCCCGTTGAGGTAGAACCTAGGAAGTTGG  150

seq1  CCGCTGGTGGCCGGTGTTCCTAAGGCTCTGCTTCACTCTGGTTTGTTTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGGTGGCCGGTGTTCCTAAGGCTCTGCTTCACTCTGGTTTGTTTGG  200

seq1  TTTTTGTTTTTTGTTTTTTCCAAGACAGGGTTTCTCTGTGTAGCCCTGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTGTTTTTTCCAAGACAGGGTTTCTCTGTGTAGCCCTGGC  250

seq1  TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCTGCTTCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCTGCTTCTG  300

seq1  CCTCCCGAGTGCTGGAATTAAAGGCTTGCGCCACCATGCCTGGCTCTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGAGTGCTGGAATTAAAGGCTTGCGCCACCATGCCTGGCTCTGCT  350

seq1  TCATTCTGGACTCTTCATGCCTGCTTTGGTTTGCTGTCTGCCGTGAACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGGACTCTTCATGCCTGCTTTGGTTTGCTGTCTGCCGTGAACAA  400

seq1  ACTCTTCCATCACACGCACCCACTATCCGTGAGACTGCGCATGAACTTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCATCACACGCACCCACTATCCGTGAGACTGCGCATGAACTTAG  450

seq1  AGCTAAGTGGTCATAGACTAACCATATGAAGTTCTGAGCCAAAAAGGAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTGGTCATAGACTAACCATATGAAGTTCTGAGCCAAAAAGGAAC  500

seq1  CTCTCTCTCCTTTTCAGTTATTTAGCCACGACAATACAAAATTGTGACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCCTTTTCAGTTATTTAGCCACGACAATACAAAATTGTGACTT  550

seq1  AACGCTATGCTTCCCAGGACTTCTTTGTTTTCCACGGCTAAGAATTC  596
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTATGCTTCCCAGGACTTCTTTGTTTTCCACGGCTAAGAATTC  597