BAC Information

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BAC

Clone NameB6Ng01-104E06
Chromosome15 (Build37)
Map Location 48,820,395 - 48,821,599
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3, EG665146
Downstream geneLOC100039600, LOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104E06.bB6Ng01-104E06.g
ACCDH912617DH912618
length1,1931,234
definitionDH912617|Mus musculus domesticus DNA, BAC clone: B6Ng01-104E06, 5' end.DH912618|Mus musculus domesticus DNA, BAC clone: B6Ng01-104E06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaataccttgtaaatgtggctgagcttgacctcagtcatgttt
tgtatcattatatggaaaaggagtcacacaactccatctgaaaacggagt
aacactgtacattaagtcaaaccttaatattattcaactgattactttct
tctaaagcattgataaaatcctgaagtcccctatgaatttggtactgcag
cataagtgccatagaaacattctttgacaaaggatcaatatgagttgcag
tataaatatgttgaactaaagcagcggtagctattgtaaaacaaagtaaa
atacctataagagctgcagtccctaagattaaggcaacagtaatgtactt
agggtataaagaggggcagcaaaagttagattcagggattatagtccagg
atcataataccatagagtagtaatattaacagttcaaagaacgtatgatg
gttgtctgtttataacataaacatcatgtgtagaagtagtagtaatgcaa
ttagtaattatagatccaaaacagaaaactataaaggagccatgtagctc
atgaaaagtaagaatgtccttgatgaagaatagcacaaaaaagttccaac
aaaaccatgagtagatttagaaaaaataaaaagcaaaaacacccaaagtc
atacataggacagcataaaaaactttaccagttgaagcaaaagggcaaaa
taagtctttcttgcaaaagaagttatggggacagacaggaacaaaaatgt
aagtggaccagccagccatgtaccaagcattaaaagtctcaagaaataga
gatagagggtcataaacaaattttgtttgttatattctaagtatttttag
taatcaaaatttggatcaataactgtcaaatcagtaatagtaaaggaagc
attaaaagatgataaggtacagaacagtagcaaatccataaggacaccac
ttaggaaaattctttttcaggagaaatatatttcaatactattcctatca
cttctaaacgagcttgagtccaagtgggtcaggacagaaaatataaatga
agttatgctgatctatagaagataagtgagaaatagcttaaacaatttgg
caaggaaatatttttctgaaaagatcacagtgacctcagctcttagaaca
catgataaatggacaccttggaactgaaaggctctttaggcaa
gaattcttggcagtcaagctttctctgagaccctgagatcctggtgtgac
caagctcctcttatcctgggatcctggaatcctaagatcctgggcgtgtt
acagtgccttgaagtggtgtctcctctgaggaccatggagctgtctggtc
tgtttgaaaccaaggtataccagcacagatcagaaggaacccaagcctct
ggtcaggccgcgatcctttgtccttgctcctgctatcacaggcccaccac
aattggtttggaacttacgttgtgtcccagtcacaagtgatcctaagatc
tcatggagaatcttctggggaccatgggactgtctgccgattttggccca
aggtgacccggagctggctgcattattttctttatatacatttcaaatgt
tatctcctttcctggttttcccttcgaaaaacacccccctcctattccct
ctaccctcctcctgctcaccaacccaccaactcccaattcctgcccttgg
cattcccccacactgggacatagaaccttcataggacagagtctctcatc
ccattgatatctgatgaggccatcctctgctgtatatgcagctggagcca
tgaatcccaccatgtgtgctttttggcggtttaatccctgggagctctgt
ggttactggcatattgttgttgttcctcaaacccttcagctcctcaattc
ctttctctagctccttcattgggaaccctgtattcagtccaatggatgtc
tgtgagcatccacctgtgtatttgtgaagtcctggaagagtctgtcaaca
gagagctatatcaggctcctatcatcaagcacttgttggcatccacaacc
ttgtctgtgtttggcattgtaatgtgatggatttccatgtgagtctgtct
tttagatggtcatttctgcagtctctactccacatgttcatgggcatatc
tttctttaggttaaggaagtttttttccatacttttttgagatatttata
gccttttaagttgaaaccttcattctcaattatactattcttacatttgg
tctttcgtgtcttctggaattctgaatgtttgagttaggatctttggcat
ttccattttctgaatgataggccatgttttcttggatctcgcactgaaat
cctatctgaatcgtggaagttatgtaaggctctgatatcttcctaagaat
ctatctacacagaatatgtaccttgttcggcgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_48820395_48821599
seq2: B6Ng01-104E06.b_47_1239 (reverse)

seq1  TTGCCTTAAAGAAGCTTTTCAGTTTCAAGTGGTCCCATTTATCAATTGTT  50
      ||||| ||||| ||| |||||||| ||||  || ||||||||||  ||| 
seq2  TTGCC-TAAAG-AGCCTTTCAGTTCCAAGGTGT-CCATTTATCATGTGT-  46

seq1  GATCTTAGAGCCTGA-GTCACTGGTGATCTCTTCAGGAAAATATTTCCTG  99
        ||| |||| |||| |||||| ||||||| ||||| |||||||||||| 
seq2  --TCTAAGAG-CTGAGGTCACT-GTGATCTTTTCAGAAAAATATTTCCT-  91

seq1  TGCCAATATGTTTAAGCTTATTTCTCACTTTATCTTCTATTAGATTCAGC  149
      ||||||  ||||||||| |||||||||| |||||||||| |||| |||||
seq2  TGCCAAATTGTTTAAGC-TATTTCTCAC-TTATCTTCTA-TAGA-TCAGC  137

seq1  AT-ACTTCATTTTATA-TTTCTGTCCTTGACCCACTTGGACTCAAGCTTC  197
      || |||||| |||||| ||||||||| |||||||||||||||||||| ||
seq2  ATAACTTCA-TTTATATTTTCTGTCC-TGACCCACTTGGACTCAAGC-TC  184

seq1  GTTTAG-AGTGATAGGAATAGTATTGAAATATATTTCTCCTG-AAAAGAA  245
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTTAGAAGTGATAGGAATAGTATTGAAATATATTTCTCCTGAAAAAGAA  234

seq1  TTTTCCTAAGTGGTGTCCTTATGGATTTGCCTACTGTTCTGTACCTTATC  295
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTCCTAAGTGGTGTCCTTATGGATTTG-CTACTGTTCTGTACCTTATC  283

seq1  ATCTTTTAATGCTTCCTTTACTATTACTGATTTGACAGTTATTGATCCAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAATGCTTCCTTTACTATTACTGATTTGACAGTTATTGATCCAA  333

seq1  ATTTTGATTACTAAAAATACTTAGAATATAACAAACAAAATTTGTTTATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATTACTAAAAATACTTAGAATATAACAAACAAAATTTGTTTATG  383

seq1  ACCCTCTATCTCTATTTCTTGAGACTTTTAATGCTTGGTACATGGCTGGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTATCTCTATTTCTTGAGACTTTTAATGCTTGGTACATGGCTGGC  433

seq1  TGGTCCACTTACATTTTTGTTCCTGTCTGTCCCCATAACTTCTTTTGCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCACTTACATTTTTGTTCCTGTCTGTCCCCATAACTTCTTTTGCAA  483

seq1  GAAAGACTTATTTTGCCCTTTTGCTTCAACTGGTAAAGTTTTTTATGCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTTATTTTGCCCTTTTGCTTCAACTGGTAAAGTTTTTTATGCTG  533

seq1  TCCTATGTATGACTTTGGGTGTTTTTGCTTTTTATTTTTTCTAAATCTAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGTATGACTTTGGGTGTTTTTGCTTTTTATTTTTTCTAAATCTAC  583

seq1  TCATGGTTTTGTTGGAACTTTTTTGTGCTATTCTTCATCAAGGACATTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTTTTGTTGGAACTTTTTTGTGCTATTCTTCATCAAGGACATTCT  633

seq1  TACTTTTCATGAGCTACATGGCTCCTTTATAGTTTTCTGTTTTGGATCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCATGAGCTACATGGCTCCTTTATAGTTTTCTGTTTTGGATCTA  683

seq1  TAATTACTAATTGCATTACTACTACTTCTACACATGATGTTTATGTTATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTAATTGCATTACTACTACTTCTACACATGATGTTTATGTTATA  733

seq1  AACAGACAACCATCATACGTTCTTTGAACTGTTAATATTACTACTCTATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAACCATCATACGTTCTTTGAACTGTTAATATTACTACTCTATG  783

seq1  GTATTATGATCCTGGACTATAATCCCTGAATCTAACTTTTGCTGCCCCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATGATCCTGGACTATAATCCCTGAATCTAACTTTTGCTGCCCCTC  833

seq1  TTTATACCCTAAGTACATTACTGTTGCCTTAATCTTAGGGACTGCAGCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACCCTAAGTACATTACTGTTGCCTTAATCTTAGGGACTGCAGCTC  883

seq1  TTATAGGTATTTTACTTTGTTTTACAATAGCTACCGCTGCTTTAGTTCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTATTTTACTTTGTTTTACAATAGCTACCGCTGCTTTAGTTCAA  933

seq1  CATATTTATACTGCAACTCATATTGATCCTTTGTCAAAGAATGTTTCTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTATACTGCAACTCATATTGATCCTTTGTCAAAGAATGTTTCTAT  983

seq1  GGCACTTATGCTGCAGTACCAAATTCATAGGGGACTTCAGGATTTTATCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTATGCTGCAGTACCAAATTCATAGGGGACTTCAGGATTTTATCA  1033

seq1  ATGCTTTAGAAGAAAGTAATCAGTTGAATAATATTAAGGTTTGACTTAAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTAGAAGAAAGTAATCAGTTGAATAATATTAAGGTTTGACTTAAT  1083

seq1  GTACAGTGTTACTCCGTTTTCAGATGGAGTTGTGTGACTCCTTTTCCATA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTGTTACTCCGTTTTCAGATGGAGTTGTGTGACTCCTTTTCCATA  1133

seq1  TAATGATACAAAACATGACTGAGGTCAAGCTCAGCCACATTTACAAGGTA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATACAAAACATGACTGAGGTCAAGCTCAGCCACATTTACAAGGTA  1183

seq1  TTTGGAATTC  1205
      ||||||||||
seq2  TTTGGAATTC  1193