BAC Information

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BAC

Clone NameB6Ng01-104J24
Chromosome15 (Build37)
Map Location 101,382,395 - 101,526,416
singlet/doubletdoublet
Overlap gene4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a
Upstream genePou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82
Downstream geneKrt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104J24.bB6Ng01-104J24.g
ACCDH912867DH912868
length2011,131
definitionDH912867|Mus musculus domesticus DNA, BAC clone: B6Ng01-104J24, 5' end.DH912868|Mus musculus domesticus DNA, BAC clone: B6Ng01-104J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,382,395 - 101,382,595)(101,525,272 - 101,526,416)
sequence
ttgtctaattgggccgtttcatgatgccctcttagctttggatctgagag
tgaagggtgtaattagaggtcaggtgatggttgggaggcagatgaagaag
actgggctggggtgttaggaggtggagatgggagtaataaggcccaggaa
gcggtgtgaggaatagtggtaatgcttcggggaggatgggtagtgggctg
a
gaattctcttggctttgcatattagtcttggttgccatggtgtggagcag
ttagagacactgaaatagccacacactaggaaagggggatgccacgtgct
tcatcaactggcttcctcaccttgcagccctgccacacccagggccccta
actcgggagagtagagaatcggagctccaaaccacgagggcacttgtttc
ccagaactgggtggaagcacattcttggtgaagaattgtgcaacagggtg
gagggagggcagctgtttccgttgtctgaggaaggtatctctctcctgtc
agacgctgagttagcacctttgaggggtagggagcttcctaccttcctgg
atgctggatcccagtgtgtctgagaactgcaattgaattcaaaacaggac
cttacacaggtactgctcagtgtgggagttagcctttcctcccacagcag
cgtctccagctacatcttctcagggaacaacacgcctagaattgttctgt
ttccttcacgcatggttcctaacatgtagactggaaaaagtgaatctcac
tcccctggaaagcaagctttcctttgaaatttggcttttcaagaagcgag
actagaaaaataaattgctatctgacttatgaaatcaccacacctgtaag
ggcacatctcagtgattcattgctggcctccaggcccctcgactttctct
gcacatcctactaacattttcagattcctgatccctaagaagtgtccaaa
tcgatggttaaaaaaatagttacaaaaaagcctgggaacctgtggtcctg
attatttggggttctaaggtttaagtgccaaggaaacatcttaacgcacc
agaggagggtgcctatgaatgtaactgtggaataggatggcataaggaaa
cattgtacagaggacagtgtctgtgaatgagaatgtggaatgactacttt
actcagatcagactgatggaaagctatcagcgaggagggagcgctgcctg
gggcagagtaccttgcggagtcaggtgctgcctgcctcttcttcaggaga
gtcaagtgaagctgaaccacttcgaacggacatgttagtctttacagtgc
aaaatcactgcctctccttgaccttagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101382395_101382595
seq2: B6Ng01-104J24.b_54_254

seq1  TTGTCTAATTGGGCCGTTTCATGATGCCCTCTTAGCTTTGGATCTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAATTGGGCCGTTTCATGATGCCCTCTTAGCTTTGGATCTGAGAG  50

seq1  TGAAGGGTGTAATTAGAGGTCAGGTGATGGTTGGGAGGCAGATGAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGTGTAATTAGAGGTCAGGTGATGGTTGGGAGGCAGATGAAGAAG  100

seq1  ACTGGGCTGGGGTGTTAGGAGGTGGAGATGGGAGTAATAGGGCCCAGGAA  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTGGGCTGGGGTGTTAGGAGGTGGAGATGGGAGTAATAAGGCCCAGGAA  150

seq1  GCGGTGTGAGGAATAGTGGTAATGCTTCGGGGAGGATGGGTAGTGGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGTGAGGAATAGTGGTAATGCTTCGGGGAGGATGGGTAGTGGGCTG  200

seq1  A  201
      |
seq2  A  201

seq1: chr15_101525272_101526416
seq2: B6Ng01-104J24.g_66_1196 (reverse)

seq1  CCCTCTAAGGTCAGAGGAGA-GCAGTTGATTTTTTTCCACTGT-AAGACT  48
      ||||||||||||| |||||| |||| |||   |||| |||||| ||||||
seq2  CCCTCTAAGGTCA-AGGAGAGGCAG-TGA---TTTTGCACTGTAAAGACT  45

seq1  AACATTGTCTGTGTCTGAAGT-GTTCAGCTTCACTTGACTCTTCCCTGAG  97
      |||| |||| || || ||||| ||||||||||||||||||||  ||||| 
seq2  AACA-TGTCCGT-TC-GAAGTGGTTCAGCTTCACTTGACTCT--CCTGAA  90

seq1  GACAGAGGCAGACAGCACCTGACCTCCGC-AGGTGCTCTGCCCCAGCCGG  146
      || |||||||| |||||||||| |||||| |||| ||||||||||| | |
seq2  GA-AGAGGCAGGCAGCACCTGA-CTCCGCAAGGTACTCTGCCCCAGGCAG  138

seq1  CGCCTCCCTCCTCGCTGTTTGCTTTCCCATCAGTCTGATTCTTGAGTAAA  196
      || |||||||||||||| | ||||| |||||||||||||   ||||||||
seq2  CG-CTCCCTCCTCGCTGATAGCTTT-CCATCAGTCTGAT--CTGAGTAAA  184

seq1  GTAGTCATTCCACATTCTCATTCACAGACACTGTCCTCTGTTACAATGTT  246
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTAGTCATTCCACATTCTCATTCACAGACACTGTCCTCTG-TACAATGTT  233

seq1  TCCTTATGCCATCCTTATTCCACAGTTACATTCATAGGCACCCTCCTCTG  296
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCTTATGCCATCC-TATTCCACAGTTACATTCATAGGCACCCTCCTCTG  282

seq1  GTGCGTTAAGATGTTTCCTTGGCACTTAAACCTTAGAACCCCAAATAATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTTAAGATGTTTCCTTGGCACTTAAACCTTAGAACCCCAAATAATC  332

seq1  AGGACCACAGGTTCCCAGGCTTTTTTGTAACTATTTTTTTAACCATCGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACAGGTTCCCAGGCTTTTTTGTAACTATTTTTTTAACCATCGAT  382

seq1  TTGGACACTTCTTAGGGATCAGGAATCTGAAAATGTTAGTAGGATGTGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACTTCTTAGGGATCAGGAATCTGAAAATGTTAGTAGGATGTGCA  432

seq1  GAGAAAGTCGAGGGGCCTGGAGGCCAGCAATGAATCACTGAGATGTGCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTCGAGGGGCCTGGAGGCCAGCAATGAATCACTGAGATGTGCCC  482

seq1  TTACAGGTGTGGTGATTTCATAAGTCAGATAGCAATTTATTTTTCTAGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTGTGGTGATTTCATAAGTCAGATAGCAATTTATTTTTCTAGTC  532

seq1  TCGCTTCTTGAAAAGCCAAATTTCAAAGGAAAGCTTGCTTTCCAGGGGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTCTTGAAAAGCCAAATTTCAAAGGAAAGCTTGCTTTCCAGGGGAG  582

seq1  TGAGATTCACTTTTTCCAGTCTACATGTTAGGAACCATGCGTGAAGGAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCACTTTTTCCAGTCTACATGTTAGGAACCATGCGTGAAGGAAA  632

seq1  CAGAACAATTCTAGGCGTGTTGTTCCCTGAGAAGATGTAGCTGGAGACGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAATTCTAGGCGTGTTGTTCCCTGAGAAGATGTAGCTGGAGACGC  682

seq1  TGCTGTGGGAGGAAAGGCTAACTCCCACACTGAGCAGTACCTGTGTAAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGGAGGAAAGGCTAACTCCCACACTGAGCAGTACCTGTGTAAGG  732

seq1  TCCTGTTTTGAATTCAATTGCAGTTCTCAGACACACTGGGATCCAGCATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTTGAATTCAATTGCAGTTCTCAGACACACTGGGATCCAGCATC  782

seq1  CAGGAAGGTAGGAAGCTCCCTACCCCTCAAAGGTGCTAACTCAGCGTCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGTAGGAAGCTCCCTACCCCTCAAAGGTGCTAACTCAGCGTCTG  832

seq1  ACAGGAGAGAGATACCTTCCTCAGACAACGGAAACAGCTGCCCTCCCTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAGAGATACCTTCCTCAGACAACGGAAACAGCTGCCCTCCCTCC  882

seq1  ACCCTGTTGCACAATTCTTCACCAAGAATGTGCTTCCACCCAGTTCTGGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTGCACAATTCTTCACCAAGAATGTGCTTCCACCCAGTTCTGGG  932

seq1  AAACAAGTGCCCTCGTGGTTTGGAGCTCCGATTCTCTACTCTCCCGAGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTGCCCTCGTGGTTTGGAGCTCCGATTCTCTACTCTCCCGAGTT  982

seq1  AGGGGCCCTGGGTGTGGCAGGGCTGCAAGGTGAGGAAGCCAGTTGATGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCCTGGGTGTGGCAGGGCTGCAAGGTGAGGAAGCCAGTTGATGAA  1032

seq1  GCACGTGGCATCCCCCTTTCCTAGTGTGTGGCTATTTCAGTGTCTCTAAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTGGCATCCCCCTTTCCTAGTGTGTGGCTATTTCAGTGTCTCTAAC  1082

seq1  TGCTCCACACCATGGCAACCAAGACTAATATGCAAAGCCAAGAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACACCATGGCAACCAAGACTAATATGCAAAGCCAAGAGAATTC  1131