BAC Information

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BAC

Clone NameB6Ng01-105E08
Chromosome15 (Build37)
Map Location 20,877,692 - 21,094,618
singlet/doubletdoublet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105E08.bB6Ng01-105E08.g
ACCDH913340DH913341
length1,0501,082
definitionDH913340|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E08, 5' end.DH913341|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,093,567 - 21,094,618)(20,877,692 - 20,878,777)
sequence
gaattctcaatgcaagctgtttgtatctctgagcttcatctacctgtcac
aagcatctaaacccctgttttcaaatcacctgctgtacttggacaacatt
ttgagtgatttatttttttcttcccttaattctcgcagtccagagttaga
gattttgtttgatgattgtccacattctgtcactgacatccccatggatt
tcacatttttgtttctcctgtgcatgccagtgatagttttgagaggttac
ttgactagtaccacatagcagaggtggggatacattagtaagtgattata
atttcagaaattctatagcaaatttcctcagagctgataccttaatgtat
caaaaaattattttctcagtgtgctgaagtaaaacggcgataatcaagat
gtctcaatgtttttttgcctgtttgtatgcttctgtattcaggagcaaag
tcctttccctttgcatgccagactaaagatagcactctatttttctagtc
actcaatgtgtgaccatcatgtgtgtctgcctctgcaccctgctttcagt
cctttctcccttaaagtcaccaattattatattgagagttcacattttct
tttttttttccattttttattaggtatttagctcatttacatttccaatg
ctataccaaaagtcccccatacctacccacccccactcccctacccaccc
acttcccttttttggccctggcgttcccctgtactgcggcatataaagtt
tgtgtgtccaatggcctcactttccagtgatggcagactaggccatcttt
tgatacatattcagctagagtcaagagctccggggtactggttagttcat
aatgttgttccacctatagggttgcagatcccttttagttccttggctac
tttctctagctttctccattgggagccctgtgatccatccattagctgac
tgtgagcatccattccgtgtttgctagcccggcataatctacaagaagac
agctacatctggtcccttcaaaaaaatcttgctagtgaagcaatggtgtt

gaattctcatgggaaacctcactgcgtgtaggctcatcacaaccctgtca
agacctaaatgactatggatgtgatagacaccacgagacgatgggcagat
ttgccttgtaatcattgtattaagtgttatgcttctttgatcatatcagt
cttaataatgactgtcttaccatggagagaacatagactaggcctttcta
cctttctcttattcaactcaatcacatctatagtctagagaagaataacc
aaaatattaaaataataatgcaagacaaaattagttttatttctttgata
ttatgcaataatctttttcactaaaagaaaaaaccttgtaattatcatat
ttcaatgatctactcaaggataatgatgacaaagcctgtattctcactca
atgccttttatgtaacagtaaaaggctttggtttcccaatcatgttggtg
tttatttttttccagattaatgtctatataagtcttgtttccctaatata
tataccaagcaggaaatatatgctttgttatagaaaagtagggaaagctt
cctgccactgcctccctcagattcctaggacaattggtaggagaaaatcc
ctaatagggtttgctcaatctgtatactcaatatgtaaaatcagtttcaa
tcaatagagaagatatgaggaagtttgtttttgaggagctgtgatatctc
ccttctgcttttaaactggcattctacaaacatgtccgttgttctttttc
cacaataaaactctaggtggcattttaataggcttgcattccttaaatta
aatgcttctcaataaactcacttttaattaaagatcaaaagtaattgaaa
ataaggctacgttggtaaaattatatataaacagttgcatacttttttca
tttactttacattctgatatgtttagagtttttaaagatatcttgttgct
aatttatagatccctttaagtattgtattgccattcttgtactaaggtat
ctctatatgtattgacggctcaaattgcatttttaaatacacttgagacc
aaatctcattcctcttacctttttataaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21093567_21094618
seq2: B6Ng01-105E08.b_47_1095 (reverse)

seq1  ACACCATTGCATACACTAGCAAGATTTTATTGAAAGGACCCAGATGTAGC  50
      |||||||||| | ||||||||||||||| ||||| ||| |||||||||||
seq2  ACACCATTGC-TTCACTAGCAAGATTTTTTTGAAGGGA-CCAGATGTAGC  48

seq1  TGTC-TCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGC  99
      |||| |||||| ||| |||||||||  ||||||||||| ||| |||||||
seq2  TGTCTTCTTGT-AGATTATGCCGGG--CTAGCAAACACGGAA-TGGATGC  94

seq1  TCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAG-AAGCTAG  148
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGAAAGCTAG  144

seq1  AGAAAGTAGCCAAGGAACT-AAAGGGATCTGCAACCCTATAGGTGGAACA  197
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGAAAGTAGCCAAGGAACTAAAAGGGATCTGCAACCCTATAGGTGGAACA  194

seq1  ACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGAATATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGAATATG  244

seq1  TATCAAAAGATGGCCTAGTCTGCCATCACTGGAAAGAGAGGCCATTGGAC  297
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATCAAAAGATGGCCTAGTCTGCCATCACTGGAAAGTGAGGCCATTGGAC  294

seq1  ACACAAACTTTATATGCCGCAGTACAGGGGAACGCCAGGGCCAAAAAAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACTTTATATGCCGCAGTACAGGGGAACGCCAGGGCCAAAAAAGG  344

seq1  GAAGTGGGTGGGTAGGGGAGTGGGGGTGGGTAGGTATGGGGGACTTTTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGTGGGTAGGGGAGTGGGGGTGGGTAGGTATGGGGGACTTTTGG  394

seq1  TATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAA  444

seq1  AAAAAAGAAAATGTGAACTCTCAATATAATAATTGGTGACTTTAAGGGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAATGTGAACTCTCAATATAATAATTGGTGACTTTAAGGGAG  494

seq1  AAAGGACTGAAAGCAGGGTGCAGAGGCAGACACACATGATGGTCACACAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTGAAAGCAGGGTGCAGAGGCAGACACACATGATGGTCACACAT  544

seq1  TGAGTGACTAGAAAAATAGAGTGCTATCTTTAGTCTGGCATGCAAAGGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGACTAGAAAAATAGAGTGCTATCTTTAGTCTGGCATGCAAAGGGA  594

seq1  AAGGACTTTGCTCCTGAATACAGAAGCATACAAACAGGCAAAAAAACATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTTGCTCCTGAATACAGAAGCATACAAACAGGCAAAAAAACATT  644

seq1  GAGACATCTTGATTATCGCCGTTTTACTTCAGCACACTGAGAAAATAATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATCTTGATTATCGCCGTTTTACTTCAGCACACTGAGAAAATAATT  694

seq1  TTTTGATACATTAAGGTATCAGCTCTGAGGAAATTTGCTATAGAATTTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATACATTAAGGTATCAGCTCTGAGGAAATTTGCTATAGAATTTCT  744

seq1  GAAATTATAATCACTTACTAATGTATCCCCACCTCTGCTATGTGGTACTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATAATCACTTACTAATGTATCCCCACCTCTGCTATGTGGTACTA  794

seq1  GTCAAGTAACCTCTCAAAACTATCACTGGCATGCACAGGAGAAACAAAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTAACCTCTCAAAACTATCACTGGCATGCACAGGAGAAACAAAAA  844

seq1  TGTGAAATCCATGGGGATGTCAGTGACAGAATGTGGACAATCATCAAACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATCCATGGGGATGTCAGTGACAGAATGTGGACAATCATCAAACA  894

seq1  AAATCTCTAACTCTGGACTGCGAGAATTAAGGGAAGAAAAAAATAAATCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTAACTCTGGACTGCGAGAATTAAGGGAAGAAAAAAATAAATCA  944

seq1  CTCAAAATGTTGTCCAAGTACAGCAGGTGATTTGAAAACAGGGGTTTAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATGTTGTCCAAGTACAGCAGGTGATTTGAAAACAGGGGTTTAGA  994

seq1  TGCTTGTGACAGGTAGATGAAGCTCAGAGATACAAACAGCTTGCATTGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGACAGGTAGATGAAGCTCAGAGATACAAACAGCTTGCATTGAG  1044

seq1  AATTC  1052
      |||||
seq2  AATTC  1049

seq1: chr15_20877692_20878777
seq2: B6Ng01-105E08.g_69_1150

seq1  GAATTCTCATGGGAAACCTCACTGCGTGTAGGCTCATCACAACCCTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGGGAAACCTCACTGCGTGTAGGCTCATCACAACCCTGTCA  50

seq1  AGACCTAAATGACTATGGATGTGATAGACACCACGAGACGATGGGCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAAATGACTATGGATGTGATAGACACCACGAGACGATGGGCAGAT  100

seq1  TTGCCTTGTAATCATTGTATTAAGTGTTATGCTTCTTTGATCATATCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTGTAATCATTGTATTAAGTGTTATGCTTCTTTGATCATATCAGT  150

seq1  CTTAATAATGACTGTCTTACCATGGAGAGAACATAGACTAGGCCTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAATGACTGTCTTACCATGGAGAGAACATAGACTAGGCCTTTCTA  200

seq1  CCTTTCTCTTATTCAACTCAATCACATCTATAGTCTAGAGAAGAATAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTTATTCAACTCAATCACATCTATAGTCTAGAGAAGAATAACC  250

seq1  AAAATATTAAAATAATAATGCAAGACAAAATTAGTTTTATTTCTTTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTAAAATAATAATGCAAGACAAAATTAGTTTTATTTCTTTGATA  300

seq1  TTATGCAATAATCTTTTTCACTAAAAGAAAAAACCTTGTAATTATCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAATAATCTTTTTCACTAAAAGAAAAAACCTTGTAATTATCATAT  350

seq1  TTCAATGATCTACTCAAGGATAATGATGACAAAGCCTGTATTCTCACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGATCTACTCAAGGATAATGATGACAAAGCCTGTATTCTCACTCA  400

seq1  ATGCCTTTTATGTAACAGTAAAAGGCTTTGGTTTCCCAATCATGTTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTTATGTAACAGTAAAAGGCTTTGGTTTCCCAATCATGTTGGTG  450

seq1  TTTATTTTTTTCCAGATTAATGTCTATATAAGTCTTGTTTCCCTAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTTCCAGATTAATGTCTATATAAGTCTTGTTTCCCTAATATA  500

seq1  TATACCAAGCAGGAAATATATGCTTTGTTATAGAAAAGTAGGGAAAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAAGCAGGAAATATATGCTTTGTTATAGAAAAGTAGGGAAAGCTT  550

seq1  CCTGCCACTGCCTCCCTCAGATTCCTAGGACAATTGGTAGGAGAAAATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCACTGCCTCCCTCAGATTCCTAGGACAATTGGTAGGAGAAAATCC  600

seq1  CTAATAGGGTTTGCTCAATCTGTATACTCAATATGTAAAATCAGTTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGGGTTTGCTCAATCTGTATACTCAATATGTAAAATCAGTTTCAA  650

seq1  TCAATAGAGAAGATATGAGGAAGTTTG-TTTTGAGGAGCTGTGATATCTC  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAATAGAGAAGATATGAGGAAGTTTGTTTTTGAGGAGCTGTGATATCTC  700

seq1  CCTTCTGCTTTTAAACTGGCATTCTACAAACATGTCCGTTGTTCTTTTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCTTTTAAACTGGCATTCTACAAACATGTCCGTTGTTCTTTTTC  750

seq1  CACAATAAAACTCTAGGTGGCATTTTAATAGGCTTGCATTCCTTAAATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAAACTCTAGGTGGCATTTTAATAGGCTTGCATTCCTTAAATTA  800

seq1  AATGCTTCTCAATAAACTCACTTTTAATTAAAGATCAAAAGTAATTGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCTCAATAAACTCACTTTTAATTAAAGATCAAAAGTAATTGAAA  850

seq1  ATAAGGCTACGTTGGTAAAATTATATATAAACAGTTGCCATACTTTTTTT  899
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  ATAAGGCTACGTTGGTAAAATTATATATAAACAGTTG-CATAC-TTTTTT  898

seq1  CAATTACTTTACATTCTGATATGTTTAGAGATTTTTAAAGATATCTTGTT  949
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATTTACTTTACATTCTGATATGTTTAGAG-TTTTTAAAGATATCTTGTT  947

seq1  GCTAATTTATAGATCCCTTTAAGTATTGTATTGCCATTCTTGTACTAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTATAGATCCCTTTAAGTATTGTATTGCCATTCTTGTACTAAGG  997

seq1  TAATCTCTAT-TGTACTGACAGTCTCAAATTGCATTTTAAAATACACTTG  1048
      | |||||||| |||| |||| | ||||||||||||||| |||||||||||
seq2  T-ATCTCTATATGTATTGAC-GGCTCAAATTGCATTTTTAAATACACTTG  1045

seq1  AGAACCAAAT-TCATTTCTCTTTACATTATTATAAAAAA  1086
      || ||||||| ||||| ||| |||| || ||||||||||
seq2  AG-ACCAAATCTCATTCCTC-TTACCTTTTTATAAAAAA  1082