BAC Information

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BAC

Clone NameB6Ng01-105J02
Chromosome15 (Build37)
Map Location 29,921,068 - 30,050,998
singlet/doubletdoublet
Overlap geneLOC382975
Upstream genenone
Downstream geneCtnnd2, 9630009A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105J02.bB6Ng01-105J02.g
ACCDH913554DH913555
length1,0401,031
definitionDH913554|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J02, 5' end.DH913555|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,921,068 - 29,922,120)(30,049,963 - 30,050,998)
sequence
gaattcattgttcaattgcttggggatcttggcttcagttggtatatctg
attcattaatattgactttgtaacaacaacgcaaagcacatgtgtatttg
ttaccttaaaataaagcatctcatttttctttattgggcaaattttttct
ttagatttcaaagatagattgaaatcagggaaatagtgaggcggtacttt
atcaaatttagaatgttagtttctgtaaaaaagaaaagagtaatttctta
acttgaaacatatattctaatgcacggcgaacacatgatttacaaagagg
ctctaagcaaaagagagtaccagtgtgcttgatgaagcaaaataaatggt
agatttgattcagacttttagaatcagaaagagcttcaaataaaggtata
ttctaaaatcaagaatcagaacaaatgcttactacaatgaaaagggtaat
gcaaaataaatcccaggtagcaatgtgtggtatcctttgatttgcacaga
cagagacagtatagaagaaaacaaaacaataacaacaacaaaggcatttt
cttctgttgctataacaaaagcaatttaagggggggaggtttattttttt
tcttttattggatattttctttatttacatttcaaatgttatcccctttc
caagcctcccctatggaaaccccctataccttccccactccccattcctc
tatgagggtgctccccaacccacctacccactcctgccctggcatttccc
taccctcgggtatcaaaccaccacaggaccaagcactgctcctcccactg
gtgtccaatgtggccagagccatgggtccctccatgtgtactctctggtt
gatggtccagttcccaggagctctgggggtctggcctgttgacactgttg
ctcacacacacacacacagggctgcaaaccccctcagttccttcagtccc
ttctcactcctcatccgggaaaggtttatttgacttagattcgaggacac
atctcatgcagataactcaggcagcagagtaggagcttgt
gaattcttgagaaatgctatttgtgatgaacaaactatggtaaaaacaat
aatatattatttgaggtggaactatgtgaagaaacttttgaatcatgatg
agggttcttgaaaaataatttgtgtaaacacaatcaatcactctgatgct
ttcttgaagttccaactatttcaaacttttatgaaagagttgatatttga
gagacttctgttcagaaaatttaggtgtgataatgataaagaaggaattt
gtttctgtttctgaaacaaaattaatttaaaaatacatgaaaacattttg
agagatccataattcacttgaaataattaaaaaaaacccaatgtatttta
ccacatattaaattttcatgatcctttattatgaaagctgcattagtctt
tgtgtctgagaatatatgcatgtacatatgaattttatttgcaaggttat
gagtttttttagttagaaatccttcagtttcatataattaaatttatatc
aacctataaaactcctatttatcatggatgacttcctggatttatattag
aacatatacattatccatgagagctaaatgtgtctcttttattactgctg
acatttatctacagttcatttattttggtttttatttttggtaattagac
aactggtcatggtatccatttcttctgggagaattggttaagaattggtt
tttgaagtacacttttaaaagagctgccttctaaatataatttgtagagc
tcagaatacctttttggttgaagaccctttgggacttcatcttttccttc
tcacttctaatgttctgttggctgattccattgttgtatatatttcagtc
atggaacaggcagggggaagatttttgtataggggaatcttttcactaac
ttatagtagttataagttttgtaacacattattttaattgttcataacat
agaatgtcatgttctatgacgggcaaggtgctcaaatctgtattgcagca
ctcagaactctgagcagctaaatggcattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29921068_29922120
seq2: B6Ng01-105J02.b_47_1086

seq1  GAATTCATTGTTCAATTGCTTGGGGATCTTGGCTTCAGTTGGTATATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTCAATTGCTTGGGGATCTTGGCTTCAGTTGGTATATCTG  50

seq1  ATTCATTAATATTGACTTTGTAACAACAACGCAAAGCACATGTGTATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAATATTGACTTTGTAACAACAACGCAAAGCACATGTGTATTTG  100

seq1  TTACCTTAAAATAAAGCATCTCATTTTTCTTTATTGGGCAAATTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAAAATAAAGCATCTCATTTTTCTTTATTGGGCAAATTTTTTCT  150

seq1  TTAGATTTCAAAGATAGATTGAAATCAGGGAAATAGTGAGGCGGTACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTCAAAGATAGATTGAAATCAGGGAAATAGTGAGGCGGTACTTT  200

seq1  ATCAAATTTAGAATGTTAGTTTCTGTAAAAAAGAAAAGAGTAATTTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTTAGAATGTTAGTTTCTGTAAAAAAGAAAAGAGTAATTTCTTA  250

seq1  ACTTGAAACATATATTCTAATGCACGGCGAACACATGATTTACAAAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAACATATATTCTAATGCACGGCGAACACATGATTTACAAAGAGG  300

seq1  CTCTAAGCAAAAGAGAGTACCAGTGTGCTTGATGAAGCAAAATAAATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGCAAAAGAGAGTACCAGTGTGCTTGATGAAGCAAAATAAATGGT  350

seq1  AGATTTGATTCAGACTTTTAGAATCAGAAAGAGCTTCAAATAAAGGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGATTCAGACTTTTAGAATCAGAAAGAGCTTCAAATAAAGGTATA  400

seq1  TTCTAAAATCAAGAATCAGAACAAATGCTTACTACAATGAAAAGGGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAATCAAGAATCAGAACAAATGCTTACTACAATGAAAAGGGTAAT  450

seq1  GCAAAATAAATCCCAGGTAGCAATGTGTGGTATCCTTTGATTTGCACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATAAATCCCAGGTAGCAATGTGTGGTATCCTTTGATTTGCACAGA  500

seq1  CAGAGACAGTATAGAAGAAAACAAAACAATAACAACAACAAAGGCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGTATAGAAGAAAACAAAACAATAACAACAACAAAGGCATTTT  550

seq1  CTTCTGTTGCTATAACAAAAGCAATTTAAGGGGGGGAGGTTTATTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTGCTATAACAAAAGCAATTTAAGGGGGGGAGGTTTATTTTTTT  600

seq1  TCTTTTATTGGATATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTGGATATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTC  650

seq1  CAAGCCTCCCCTATGGAAACCCCCTATACCTTCCCCACTCCCCATTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTCCCCTATGGAAACCCCCTATACCTTCCCCACTCCCCATTCCTC  700

seq1  TATGAGGGTGCTCCCCAACCCACCTACCCACTCCTGCCCTGGCATTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGTGCTCCCCAACCCACCTACCCACTCCTGCCCTGGCATTTCCC  750

seq1  TACCCTCGGGTATCAAACCACCACAGGACCAAGCACTGCTCCTCCCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCGGGTATCAAACCACCACAGGACCAAGCACTGCTCCTCCCACTG  800

seq1  GTGTCCAATGTGGCCAGAGCCATGGGTCCCTCCATGTGTACTCTCTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAATGTGGCCAGAGCCATGGGTCCCTCCATGTGTACTCTCTGGTT  850

seq1  GATGGTCCAGTTCCCAGGAGCTCTGGGGGTCTGGCCTGTTGACACTGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCCAGTTCCCAGGAGCTCTGGGGGTCTGGCCTGTTGACACTGTTG  900

seq1  CTCACACACACACACACAGGGCTGCAAACCCCCTCAGTTCCTTCAGTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACACACACACAGGGCTGCAAACCCCCTCAGTTCCTTCAGTCCC  950

seq1  TTCTCCAACTCCTCCATCCGGGAAAAGGTTTATTTTGACTTAGAATTCGA  1000
      |||||  |||||| |||||||| ||||||||| |||||||||| ||||||
seq2  TTCTC--ACTCCT-CATCCGGG-AAAGGTTTA-TTTGACTTAG-ATTCGA  994

seq1  GGACACAATCTCATGCAGATAAACTCAGGGCAGCAGGAGTTAAGGGAGCT  1050
      |||||| ||||||||||||| |||||| ||||||| ||||    ||||||
seq2  GGACAC-ATCTCATGCAGAT-AACTCA-GGCAGCA-GAGT---AGGAGCT  1037

seq1  TGT  1053
      |||
seq2  TGT  1040

seq1: chr15_30049963_30050998
seq2: B6Ng01-105J02.g_67_1097 (reverse)

seq1  TTAATGGCAATTTTGCTGCCTCAGAGTCCTGAGTGCTGCAATTACAGATT  50
      ||||| || |||| |||| |||||||| ||||||||||||| ||||||||
seq2  TTAAT-GCCATTTAGCTG-CTCAGAGTTCTGAGTGCTGCAA-TACAGATT  47

seq1  TGAGCCACCTTGCCCGTCATAGACACATGACATTCTATGTTATGAACAAT  100
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGAG-CACCTTGCCCGTCATAGA-ACATGACATTCTATGTTATGAACAAT  95

seq1  TAAAATAATGTGTTACAAAACTTATAACTACTATAAGTTAGTGAAAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATGTGTTACAAAACTTATAACTACTATAAGTTAGTGAAAAGAT  145

seq1  TCCCCTATACAAATATCTTCCCCCTGCCTGTTCCATGACTGAAATATATA  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCCCTATACAAAAATCTTCCCCCTGCCTGTTCCATGACTGAAATATATA  195

seq1  CAACAATGGAATCAGCCAACAGAACATTAGAAGTGAGAAGGAAAAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGGAATCAGCCAACAGAACATTAGAAGTGAGAAGGAAAAGATGA  245

seq1  AGTCCCAAAGGGTCTTCAACCAAAAAGGTATTCTGAGCTCTACAAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAAAGGGTCTTCAACCAAAAAGGTATTCTGAGCTCTACAAATTAT  295

seq1  ATTTAGAAGGCAGCTCTTTTAAAAGTGTACTTCAAAAACCAATTCTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAGGCAGCTCTTTTAAAAGTGTACTTCAAAAACCAATTCTTAAC  345

seq1  CAATTCTCCCAGAAGAAATGGATACCATGACCAGTTGTCTAATTACCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCCCAGAAGAAATGGATACCATGACCAGTTGTCTAATTACCAAA  395

seq1  AATAAAAACCAAAATAAATGAACTGTAGATAAATGTCAGCAGTAATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACCAAAATAAATGAACTGTAGATAAATGTCAGCAGTAATAAAA  445

seq1  GAGACACATTTAGCTCTCATGGATAATGTATATGTTCTAATATAAATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACATTTAGCTCTCATGGATAATGTATATGTTCTAATATAAATCCA  495

seq1  GGAAGTCATCCATGATAAATAGGAGTTTTATAGGTTGATATAAATTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCATCCATGATAAATAGGAGTTTTATAGGTTGATATAAATTTAAT  545

seq1  TATATGAAACTGAAGGATTTCTAACTAAAAAAACTCATAACCTTGCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAAACTGAAGGATTTCTAACTAAAAAAACTCATAACCTTGCAAAT  595

seq1  AAAATTCATATGTACATGCATATATTCTCAGACACAAAGACTAATGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCATATGTACATGCATATATTCTCAGACACAAAGACTAATGCAGC  645

seq1  TTTCATAATAAAGGATCATGAAAATTTAATATGTGGTAAAATACATTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAATAAAGGATCATGAAAATTTAATATGTGGTAAAATACATTGGG  695

seq1  TTTTTTTTAATTATTTCAAGTGAATTATGGATCTCTCAAAATGTTTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATTATTTCAAGTGAATTATGGATCTCTCAAAATGTTTTCAT  745

seq1  GTATTTTTAAATTAATTTTGTTTCAGAAACAGAAACAAATTCCTTCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTAAATTAATTTTGTTTCAGAAACAGAAACAAATTCCTTCTTTA  795

seq1  TCATTATCACACCTAAATTTTCTGAACAGAAGTCTCTCAAATATCAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATCACACCTAAATTTTCTGAACAGAAGTCTCTCAAATATCAACTC  845

seq1  TTTCATAAAAGTTTGAAATAGTTGGAACTTCAAGAAAGCATCAGAGTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAAAGTTTGAAATAGTTGGAACTTCAAGAAAGCATCAGAGTGAT  895

seq1  TGATTGTGTTTACACAAATTATTTTTCAAGAACCCTCATCATGATTCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTGTTTACACAAATTATTTTTCAAGAACCCTCATCATGATTCAAA  945

seq1  AGTTTCTTCACATAGTTCCACCTCAAATAATATATTATTGTTTTTACCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTCACATAGTTCCACCTCAAATAATATATTATTGTTTTTACCAT  995

seq1  AGTTTGTTCATCACAAATAGCATTTCTCAAGAATTC  1036
      ||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTCATCACAAATAGCATTTCTCAAGAATTC  1031