BAC Information

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BAC

Clone NameB6Ng01-105N09
Chromosome14 (Build37)15 (Build37)
Map Location 10,999,372 - 11,000,02220,876,728 - 20,877,697
singlet/doubletsingletsinglet
Overlap geneFhit
Upstream geneLOC100041948, LOC100042415
Downstream geneLOC100041974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105N09.bB6Ng01-105N09.g
ACCDH913748DH913749
length970963
definitionDH913748|Mus musculus domesticus DNA, BAC clone: B6Ng01-105N09, 5' end.DH913749|Mus musculus domesticus DNA, BAC clone: B6Ng01-105N09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,999,372 - 11,000,022)(20,876,728 - 20,877,697)
sequence
gaattcatatgtagaaggttatactttgcccatttcccttgtattatata
catttggttgctgtgtgaatgccaacatatatttattactaaatgcttaa
ttagtttggtggcttgaataggtatggcccccataggctaatatatttga
aaatatagtcacatgggagtggtgctatttgaatggattagaagtgttag
aatgtatgaccattctcgaagaatagtgtgggcttggggttttaaaactc
catacaaggcacaatctctctctctccctctctctctctctctctctctc
tctctctctctcagcaatccctaggactttggcaacaaaaatgttcaaaa
gccttttatagctgctgtcagatttttgtaaagcatctgagattcctgtg
aacttatttatataacaagctggaacctgaagctgacttgaaagtctttc
tactctaattatttagaattggaaatgcctagaaacgatgctctgccttc
tcccaagaatatctgcctgcaatggcggcttcagaaacaagcatttggaa
gcaagaatgagcatgtagccactgcagcttattacaaggagcagttacag
cggatacacaaactatggtttagaaaagcagtttgaaagaactgctatta
gctattctctctgtagcagcacattgtaaatggctgctcatattgttccc
tcctggcctactatagcagtttatttctgaagcttctatagttcatgtgt
aatcatgtagcaaaataattcaggatataatgacccaccaggatctttac
tggtttgaagttcttatcatagtactgtgcctacttgctcggcatgggct
tctcaaatgaatcctttaaacctctgcgcctctggcattccaacttgacg
taaggctcttctactttacaagagtcagtattttacttccagctataaaa
tctaggagaatgcggtccaa
gaattcccatccatgactacctatagaaccattaaaaagatgaggaatgg
atgaagaaagttagaaaataatgaggattcatggtaagacaactaaaatg
tgggaaaaaatgtgatgaaaatgttttgaaatttgtgacattcacttttg
agtaaataatttattattccaaagtttttaaaataaaaatatagtacact
aatattggcttatccacatttcacatgtatataaatatttgtatcagttt
gatatggcatcacacatattagggtgcctaaatatgtatatgtatatact
gaatgaaagcaatgttgagatctgaaggaaataagtaatgagtttcaaaa
atttaatattattttatcattttacggcatcaaaacactcatccacaaaa
ggaaacaatagagatagtaaaacccaacttactccttttagtaacagtaa
gcaattccaacctgagtatagagtactggtagaacaaatatattaacaca
gagttccctgaactgaaagtgatacaatttttttttcataacagttggtc
caagaagaccactttgtattaatatatggtgtgttctcattttggtaatg
ctggtggccaataagtcattttctaagagtggagatgcacacaatattta
gcctgtgcattcttatggttgtgttaattgtggagaagaagaaagaagat
tttaagtgcttgtcaaatactctctgccattggtatagacagtcaaggtt
cctggtttgatgaacatcatcctatctcacgggtacatggtacattgaaa
ttgtgatgcttggaaacaatcttgacagatatgtttagtcaatgatatta
ataagtcacattttgatgttcagctcctgactatgcaagataaatagaca
ctgtgcagttttgaagagcttctagtcccttggagaagaactacacacat
aacaagcagatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_10999372_11000022
seq2: B6Ng01-105N09.b_354_1012

seq1  CAGCAATCCCTAGGACTTTGGCAACAAAAATGTTCAAAAGCCTTTTATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCCCTAGGACTTTGGCAACAAAAATGTTCAAAAGCCTTTTATAG  50

seq1  CTGCTGTCAGATTTTTGTAAAGCATCTGAGATTCCTGTGAACTTATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCAGATTTTTGTAAAGCATCTGAGATTCCTGTGAACTTATTTAT  100

seq1  ATAACAAGCTGGAACCTGAAGCTGACTTGAAAGTCTTTCTACTCTAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGCTGGAACCTGAAGCTGACTTGAAAGTCTTTCTACTCTAATTA  150

seq1  TTTAGAATTGGAAATGCCTAGAAACGATGCTCTGCCTTCTCCCAAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATTGGAAATGCCTAGAAACGATGCTCTGCCTTCTCCCAAGAATA  200

seq1  TCTGCCTGCAATGGCGGCTTCAGAAACAAGCATTTGGAAGCAAGAATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCAATGGCGGCTTCAGAAACAAGCATTTGGAAGCAAGAATGAG  250

seq1  CATGTAGCCACTGCAGCTTATTACAAGGAGCAGTTACAGCGGATACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCCACTGCAGCTTATTACAAGGAGCAGTTACAGCGGATACACAA  300

seq1  ACTATGGTTTAGAAAAGCAGTTTGAAAGAACTGCTATTAGCTATTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGTTTAGAAAAGCAGTTTGAAAGAACTGCTATTAGCTATTCTCTC  350

seq1  TGTAGCAGCACATTGTAAATGGCTGCTCATATTGTTCCCTCCTGGCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGCACATTGTAAATGGCTGCTCATATTGTTCCCTCCTGGCCTAC  400

seq1  TATAGCAGTTTATTTCTGAAGC-TCTATAGTTCATGTGTAATCATGTAGC  449
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATAGCAGTTTATTTCTGAAGCTTCTATAGTTCATGTGTAATCATGTAGC  450

seq1  AAAATAATTCAGGATATAATGACCCACCAGGATCTTAACT-GATTGAAGT  498
      |||||||||||||||||||||||||||||||||||| ||| | |||||||
seq2  AAAATAATTCAGGATATAATGACCCACCAGGATCTTTACTGGTTTGAAGT  500

seq1  TCTTATCATAGTACTGTGCCTAC-TGCTCGGCAT-GGCTTCTCAAATGAA  546
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  TCTTATCATAGTACTGTGCCTACTTGCTCGGCATGGGCTTCTCAAATGAA  550

seq1  TCCTTT-AACCTCTGCGCCTCT-GCATTCCAACTTGACGTAAGGCTCTTC  594
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCTTTAAACCTCTGCGCCTCTGGCATTCCAACTTGACGTAAGGCTCTTC  600

seq1  TACTTTACAAGAGTCAGTA-TTTACTCCAAGCTATAAAATCTAGGAG-AT  642
      ||||||||||||||||||| |||||| | |||||||||||||||||| ||
seq2  TACTTTACAAGAGTCAGTATTTTACTTCCAGCTATAAAATCTAGGAGAAT  650

seq1  GCGGTCCAA  651
      |||||||||
seq2  GCGGTCCAA  659

seq1: chr15_20876728_20877697
seq2: B6Ng01-105N09.g_67_1029 (reverse)

seq1  TCATCTGCTTATTTATGTGTGTAATTTATCTCCAAGAGGACTAGAAGCAC  50
      ||||||||||  ||||||||||| ||  |||||||| ||||||||||| |
seq2  TCATCTGCTT-GTTATGTGTGTAGTTCTTCTCCAAG-GGACTAGAAGCTC  48

seq1  TTTGAAAACTGACACAGTGTCTGATTTATCTTGCATAAGTCAGGAGCTGA  100
       || ||||||| |||||||||| ||||||||||||| |||||||||||||
seq2  -TTCAAAACTG-CACAGTGTCT-ATTTATCTTGCAT-AGTCAGGAGCTGA  94

seq1  ACATCAAAATGTTACTTAATAATATCATTGACTAAACATCTCTGTCAAGA  150
      |||||||||||| ||||| |||||||||||||||||||| ||||||||||
seq2  ACATCAAAATGTGACTTATTAATATCATTGACTAAACATATCTGTCAAGA  144

seq1  TTGTTTTCCAAACATCACAATCTCAATGTACCATGTAACCCTTGAGATAG  200
      ||| ||||||| ||||||||| |||||||||||||| |||| ||||||||
seq2  TTG-TTTCCAAGCATCACAATTTCAATGTACCATGT-ACCCGTGAGATAG  192

seq1  GATGAT-TTCATCAAACCAGGAACCTTGACTGTCTATACCAATAGCAGAG  249
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  GATGATGTTCATCAAACCAGGAACCTTGACTGTCTATACCAATGGCAGAG  242

seq1  AGTATTTGACAAGCACTTAAAATCTTCTTTCTTCTTCTCCACAATTAACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGACAAGCACTTAAAATCTTCTTTCTTCTTCTCCACAATTAACA  292

seq1  CAAACATAAGAATGCACAGGCTAAATATTGTGTGCATCTCCACTCTTAGA  349
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATAAGAATGCACAGGCTAAATATTGTGTGCATCTCCACTCTTAGA  342

seq1  AAATGACTTATTGGCCACCAGCATTACCAAAATGAGAACACACCATATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTTATTGGCCACCAGCATTACCAAAATGAGAACACACCATATAT  392

seq1  TAATACAAAGTGGTCTTCTTGGACCAACTGTTATGAAAAAAAAATTGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAAAGTGGTCTTCTTGGACCAACTGTTATGAAAAAAAAATTGTAT  442

seq1  CACTTTCAGTTCAGGGAACTCTGTGTTAATATATTTGTTCTACCAGTACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAGTTCAGGGAACTCTGTGTTAATATATTTGTTCTACCAGTACT  492

seq1  CTATACTCAGGTTGGAATTGCTTACTGTTACTAAAAGGAGTAAGTTGGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTCAGGTTGGAATTGCTTACTGTTACTAAAAGGAGTAAGTTGGGT  542

seq1  TTTACTATCTCTATTGTTTCCTTTTGTGGATGAGTGTTTTGATGCCGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATCTCTATTGTTTCCTTTTGTGGATGAGTGTTTTGATGCCGTAA  592

seq1  AATGATAAAATAATATTAAATTTTTGAAACTCATTACTTATTTCCTTCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAAAATAATATTAAATTTTTGAAACTCATTACTTATTTCCTTCAG  642

seq1  ATCTCAACATTGCTTTCATTCAGTATATACATATACATATTTAGGCACCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAACATTGCTTTCATTCAGTATATACATATACATATTTAGGCACCC  692

seq1  TAATATGTCTGATGCCATATCAAACTGATACAAATATTTATATACATGTG  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTGTGATGCCATATCAAACTGATACAAATATTTATATACATGTG  742

seq1  AAATGTGGATAAGCCAATATTAGTGTACTATATTTTTATTTTAAAAACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGATAAGCCAATATTAGTGTACTATATTTTTATTTTAAAAACTT  792

seq1  TGGAATAATAAATTATTTACTCAAAAGTGAATGTCACAAATTTCAAAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAATAAATTATTTACTCAAAAGTGAATGTCACAAATTTCAAAACA  842

seq1  TTTTCATCACATTTTTTCCCACATTTTAGTTGTCTTACCATGAATCCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCACATTTTTTCCCACATTTTAGTTGTCTTACCATGAATCCTCA  892

seq1  TTATTTTCTAACTTTCTTCATCCATTCCTCATCTTTTTAATGGTTCTATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTAACTTTCTTCATCCATTCCTCATCTTTTTAATGGTTCTATA  942

seq1  GGTAGTCATGGATGGGAATTC  970
      |||||||||||||||||||||
seq2  GGTAGTCATGGATGGGAATTC  963