BAC Information

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BAC

Clone NameB6Ng01-106A06
Chromosome15 (Build37)
Map Location 7,717,977 - 7,840,039
singlet/doubletdoublet
Overlap geneGdnf, Wdr70
Upstream gene4921505C17Rik, Osmr, Lifr, Egflam
Downstream geneLOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633, Slc1a3, EG622770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106A06.bB6Ng01-106A06.g
ACCDH913874DH913875
length1,0921,110
definitionDH913874|Mus musculus domesticus DNA, BAC clone: B6Ng01-106A06, 5' end.DH913875|Mus musculus domesticus DNA, BAC clone: B6Ng01-106A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,838,929 - 7,840,039)(7,717,977 - 7,719,104)
sequence
gaattcatgtttcccctcctcttgctccaaatgaggtttgtagaatgtag
tgtgtggcatttgtgcttcccagtgtcagcttcatggtcccctcccccct
tgattcgctttatgctgtccctcccatctttcctcctaaccccaagaaaa
ttgaaaacagcttgtgagaactcaggactcaggttctttgggaccccaga
gtaccagttattcatcaccagacatgaattcagaccatagcttccagtga
ggcacctctttaaatagcttcccatcaggttaatatcaaggctctgcaat
tgatatctgctttatttctgtcatggcgttgctgttttgtctcataggtg
ggagagattattaattgtctaccaatatgtgctctttgtaaaaaaaaaaa
aaaaaaaagatcttaatgagacttggatctctgtgaactaaaaacaataa
gcacctggcctcagtctgaggccagtggaacatattgtgtgtgtcaaagc
atgaacagcagatctaaggttgccgcggtggggagcgtcacaggaagcca
gcgctccatagtgccagcctcacatcggaactggactgcccagccctggt
tccaaggctctcaggaacagggtcaggtccagaaatgaacatcttgtatt
tctgtgggactttgagtgggtggtaagaggcggtatggatttcactcaca
gagaacacaatgctatgatttagatctggaaagttatgggtttctctccc
accagtacttgactccctagtaaactgaccatcaaagccccagcaggact
cttccctccccctcagttttttatttggtcacctgacttgacttgtatgg
ctgttctttctagagtgtggtccgctgcctgtggcatccaaagctgaacc
agatcatgggttggaactggaaatggactggcaaagtgtactacgaccca
acagagtcagaggtatttcttgaaagctgtttgagatgatgacactgggg
aggcttgggtcaccctgctttaatcatcccctttgatggggatccgcctt
tagaaagcagctggtacccagtaaagcctagactctgcattg

gaattcttaactcttggaagtctccttcaggttcttccctgtggttcctt
ccatgggccctgttaaaccacggctgtttgcctctgcaaagccacctgaa
gccatttcaaactctgtgaagaagggcacagatctttttaaaagtctttc
acccaattaagacatggtaaggagacaaagaacgatggtggtctcatttc
aacatcaatttctatccattttatctctcaagaatgctgaacgatgctgg
agagaatatcacttcctatctccagacagccagaagccaggattcaccca
ccgtcacttcaaattaaccctacaccaacttatctgaggcctgaatttta
tcttcaaagccccttggccttatccatataatgtaaccaagtcacaaagt
aacagcccccatattcccagatccacattcacatccgcatccaaggagac
gatatcttacagggtatgctgcatgggagctgtctgagaatccagttctt
catatctcccctccttcgtgcgagcatgtagtgaacctctttgtaaatcc
taccttcaagtagcagatggggtaagagaggtgacctgcagccatcactg
tcctatgagatccaccctataatagagtcgtgtttggtgctcagcaatag
tgcaggggaggccttggtaagaaggctacaaggcaaatggctttggtaag
ggaataggtgggccaaatactgttggcttaaaatggaatggagggcttaa
caaatcaccattaattcaactttactaagatatcagcaatggtttgagta
ttcttatgtgatttttaatttttggcttcttttgaaaacaagaaactagt
gatctcaacgcctactttgtagaccaggtgtatatgtgtgacgcattgca
cactaagtataataagcaaagactcaagctctttggggagcacacccctg
tgcccttctgtagaatatgcccttcactcatgaagaatcgtgccctgcag
aggcaaaatgagccatgttctgtgagcacacacacagctgccacggtgac
tccagattccccagcagccacaagtggagactgagctagatgcctcaacc
cctgagggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_7838929_7840039
seq2: B6Ng01-106A06.b_46_1137 (reverse)

seq1  CAATGCTAGGAGTCTAAGGCTTTACTGGGTACCAGCTGCCTTTTCTAAAA  50
      ||||||   |||||| |||||||||||||||||||||||  |||||||| 
seq2  CAATGC--AGAGTCT-AGGCTTTACTGGGTACCAGCTGC--TTTCTAAA-  44

seq1  GGGCGGATCCCCATCAAAGGGGGATGAATAGAAGCCAGGGTGAACCCAAG  100
       ||||||||||||||||| |||||||| || ||| ||||||| |||||||
seq2  -GGCGGATCCCCATCAAA-GGGGATGATTA-AAG-CAGGGTG-ACCCAAG  89

seq1  CCCTCCCCAGTTGTCATCCATCTCAAACAGGCTTTTCCAAGAAATACCTC  150
       ||||||||| |||||| ||||||||||| |||||  |||||||||||||
seq2  -CCTCCCCAG-TGTCAT-CATCTCAAACA-GCTTT--CAAGAAATACCTC  133

seq1  TGACTCTTGTTGGGGTCGTAGTACACTTTTGCCAGTCCATTTCCAGTTCC  200
      |||||| |||| |||||||||||||| |||||||||||||||||||||||
seq2  TGACTC-TGTT-GGGTCGTAGTACAC-TTTGCCAGTCCATTTCCAGTTCC  180

seq1  AA-CCATGATCTGGTTCAGCTTTGGATGCCACAGGCAGCGGACCACACTC  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATGATCTGGTTCAGCTTTGGATGCCACAGGCAGCGGACCACACTC  230

seq1  TAGAAAGAACAGCCATACAAGTCAAGTCAGGTGACCAAATAAAAAACTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAACAGCCATACAAGTCAAGTCAGGTGACCAAATAAAAAACTGA  280

seq1  GGGGGAGGGAAGAGTCCTGCTGGGGCTTTGATGGTCAGTTTACTAGGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGAAGAGTCCTGCTGGGGCTTTGATGGTCAGTTTACTAGGGAG  330

seq1  TCAAGTACTGGTGGGAGAGAAACCCATAACTTTCCAGATCTAAATCATAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTACTGGTGGGAGAGAAACCCATAACTTTCCAGATCTAAATCATAG  380

seq1  CATTGTGTTCTCTGTGAGTGAAATCCATACCGCCTCTTACCACCCACTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTTCTCTGTGAGTGAAATCCATACCGCCTCTTACCACCCACTCA  430

seq1  AAGTCCCACAGAAATACAAGATGTTCATTTCTGGACCTGACCCTGTTCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCACAGAAATACAAGATGTTCATTTCTGGACCTGACCCTGTTCCT  480

seq1  GAGAGCCTTGGAACCAGGGCTGGGCAGTCCAGTTCCGATGTGAGGCTGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTTGGAACCAGGGCTGGGCAGTCCAGTTCCGATGTGAGGCTGGC  530

seq1  ACTATGGAGCGCTGGCTTCCTGTGACGCTCCCCACCGCGGCAACCTTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGAGCGCTGGCTTCCTGTGACGCTCCCCACCGCGGCAACCTTAGA  580

seq1  TCTGCTGTTCATGCTTTGACACACACAATATGTTCCACTGGCCTCAGACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTTCATGCTTTGACACACACAATATGTTCCACTGGCCTCAGACT  630

seq1  GAGGCCAGGTGCTTATTGTTTTTAGTTCACAGAGATCCAAGTCTCATTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGGTGCTTATTGTTTTTAGTTCACAGAGATCCAAGTCTCATTAA  680

seq1  GATCTTTTTTTTTTTTTTTTTTTACAAAGAGCACATATTGGTAGACAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTTTTTTTTTTTTTTTTACAAAGAGCACATATTGGTAGACAATT  730

seq1  AATAATCTCTCCCACCTATGAGACAAAACAGCAACGCCATGACAGAAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCTCTCCCACCTATGAGACAAAACAGCAACGCCATGACAGAAATA  780

seq1  AAGCAGATATCAATTGCAGAGCCTTGATATTAACCTGATGGGAAGCTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATATCAATTGCAGAGCCTTGATATTAACCTGATGGGAAGCTATT  830

seq1  TAAAGAGGTGCCTCACTGGAAGCTATGGTCTGAATTCATGTCTGGTGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGTGCCTCACTGGAAGCTATGGTCTGAATTCATGTCTGGTGATG  880

seq1  AATAACTGGTACTCTGGGGTCCCAAAGAACCTGAGTCCTGAGTTCTCACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGGTACTCTGGGGTCCCAAAGAACCTGAGTCCTGAGTTCTCACA  930

seq1  AGCTGTTTTCAATTTTCTTGGGGTTAGGAGGAAAGATGGGAGGGACAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTTCAATTTTCTTGGGGTTAGGAGGAAAGATGGGAGGGACAGCA  980

seq1  TAAAGCGAATCAAGGGGGGAGGGGACCATGAAGCTGACACTGGGAAGCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCGAATCAAGGGGGGAGGGGACCATGAAGCTGACACTGGGAAGCAC  1030

seq1  AAATGCCACACACTACATTCTACAAACCTCATTTGGAGCAAGAGGAGGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCACACACTACATTCTACAAACCTCATTTGGAGCAAGAGGAGGGG  1080

seq1  AAACATGAATTC  1111
      ||||||||||||
seq2  AAACATGAATTC  1092


seq1: chr15_7717977_7719104
seq2: B6Ng01-106A06.g_67_1176

seq1  GAATTCTTAACTCTTGGAAGTCTCCTTCAGGTTCTTCCCTGTGGTTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACTCTTGGAAGTCTCCTTCAGGTTCTTCCCTGTGGTTCCTT  50

seq1  CCATGGGCCCTGTTAAACCACGGCTGTTTGCCTCTGCAAAGCCACCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGCCCTGTTAAACCACGGCTGTTTGCCTCTGCAAAGCCACCTGAA  100

seq1  GCCATTTCAAACTCTGTGAAGAAGGGCACAGATCTTTTTAAAAGTCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCAAACTCTGTGAAGAAGGGCACAGATCTTTTTAAAAGTCTTTC  150

seq1  ACCCAATTAAGACATGGTAAGGAGACAAAGAACGATGGTGGTCTCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATTAAGACATGGTAAGGAGACAAAGAACGATGGTGGTCTCATTTC  200

seq1  AACATCAATTTCTATCCATTTTATCTCTCAAGAATGCTGAACGATGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAATTTCTATCCATTTTATCTCTCAAGAATGCTGAACGATGCTGG  250

seq1  AGAGAATATCACTTCCTATCTCCAGACAGCCAGAAGCCAGGATTCACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATCACTTCCTATCTCCAGACAGCCAGAAGCCAGGATTCACCCA  300

seq1  CCGTCACTTCAAATTAACCCTACACCAACTTATCTGAGGCCTGAATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCACTTCAAATTAACCCTACACCAACTTATCTGAGGCCTGAATTTTA  350

seq1  TCTTCAAAGCCCCTTGGCCTTATCCATATAATGTAACCAAGTCACAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAAGCCCCTTGGCCTTATCCATATAATGTAACCAAGTCACAAAGT  400

seq1  AACAGCCCCCATATTCCCAGATCCACATTCACATCCGCATCCAAGGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCCCATATTCCCAGATCCACATTCACATCCGCATCCAAGGAGAC  450

seq1  GATATCTTACAGGGTATGCTGCATGGGAGCTGTCTGAGAATCCAGTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTACAGGGTATGCTGCATGGGAGCTGTCTGAGAATCCAGTTCTT  500

seq1  CATATCTCCCCTCCTTCGTGCGAGCATGTAGTGAACCTCTTTGTAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTCCCCTCCTTCGTGCGAGCATGTAGTGAACCTCTTTGTAAATCC  550

seq1  TACCTTCAAGTAGCAGATGGGGTAAGAGAGGTGACCTGCAGCCATCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCAAGTAGCAGATGGGGTAAGAGAGGTGACCTGCAGCCATCACTG  600

seq1  TCCTATGAGATCCACCCTATAATAGAGTCGTGTTTGGTGCTCAGCAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGAGATCCACCCTATAATAGAGTCGTGTTTGGTGCTCAGCAATAG  650

seq1  TGCAGGGGAGGCCTTGGTAAGAAGGCTACAAGGCAAATGGCTTTGGTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGGAGGCCTTGGTAAGAAGGCTACAAGGCAAATGGCTTTGGTAAG  700

seq1  GGAATAGGTGGGCCAAATACTGTTGGCTTAAAATGGAATGGAGGGCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGGTGGGCCAAATACTGTTGGCTTAAAATGGAATGGAGGGCTTAA  750

seq1  CAAATCACCATTAATTCAACTTTACTAAGATATCAGCAATGGTTTGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCACCATTAATTCAACTTTACTAAGATATCAGCAATGGTTTGAGTA  800

seq1  TTCTTATGTGATTTTTAATTTTTGGCTTCTTTTGAAAACAAAGAAACTAG  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCTTATGTGATTTTTAATTTTTGGCTTCTTTTGAAAAC-AAGAAACTAG  849

seq1  TGATCTCAACGCCTACTTTGTAGACCAGGTGTATATGTGTGACGCATTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCAACGCCTACTTTGTAGACCAGGTGTATATGTGTGACGCATTGC  899

seq1  ACACTAAGTATAATAAGCAAAAGACTCAAGCTCTTTGGGGAAGCACACCC  950
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  ACACTAAGTATAATAAGC-AAAGACTCAAGCTCTTTGGGG-AGCACACCC  947

seq1  CTGTGCCCTTCTGTAGAAATATGCCCTTCCACTCATGAAGGAATCGTGCC  1000
      |||||||||||||||| ||||||||||| |||||||||| ||||||||||
seq2  CTGTGCCCTTCTGTAG-AATATGCCCTT-CACTCATGAA-GAATCGTGCC  994

seq1  CTGCAGAAGGGCAAAAATGAGCCCATG-TCTGTGAGCACAACAACAC-CA  1048
      |||||||  ||| |||||||| ||||| |||||||||||    |||| ||
seq2  CTGCAGA--GGC-AAAATGAG-CCATGTTCTGTGAGCAC----ACACACA  1036

seq1  GCTGCCACGGTGACTCCAGATTCCCCAAGCAGCCACCAAAGTGGAGACAG  1098
      |||||||||||||||||||||||||| |||||||||  |||||||||| |
seq2  GCTGCCACGGTGACTCCAGATTCCCC-AGCAGCCAC--AAGTGGAGACTG  1083

seq1  AGCTAGATGCCTCACACCCCCTTGAGGGTC  1128
      |||||||||||||| |||||  ||||||||
seq2  AGCTAGATGCCTCA-ACCCC--TGAGGGTC  1110


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