BAC Information

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BAC

Clone NameB6Ng01-106E15
Chromosome15 (Build37)
Map Location 93,310,225 - 93,442,317
singlet/doubletdoublet
Overlap genePphln1, Prickle1
Upstream genePdzrn4, LOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, LOC627623
Downstream geneZfp42-ps1, LOC100042627, LOC100042631, D630010B17Rik, Adamts20, Pus7l, Irak4, Twf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106E15.bB6Ng01-106E15.g
ACCDH914070DH914071
length1,113248
definitionDH914070|Mus musculus domesticus DNA, BAC clone: B6Ng01-106E15, 5' end.DH914071|Mus musculus domesticus DNA, BAC clone: B6Ng01-106E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,310,225 - 93,311,355)(93,442,070 - 93,442,317)
sequence
gaattccagagcctttctatatagctgcacagtggagacaaaagcagaaa
ctagaaacatctctctttaactattgctttatcttggtaacatgtaatcc
ttttcactttacatggtaccaccctgaatgctactatttctaaacttggt
tttgttttgggtctttacaaaagctgtattatccctctttaatcttgttt
tcttacaacgtttctcattgtatctattggtggtggtgagaactccaagt
gcacagtattggattgcgtaggccctgtccacctatagccacagatgcag
agccagagtcattaaggctgcatagcagaaactggcttcaccactgcggt
tggtacctcggaacacatgtaaatattcccttttaaaataatagtctaat
ttaccagttaagttacagatgattggtgtttactcaagaggtaaatcctg
actataaataataatttctgggctttaagtttcacagtgtatatatacac
tacacccctggttggtggagtcacagtgttaaagttggtgttttactgtc
atgtgaccctggaaatgggtttggagatgagagtggcttagtgcgttttt
ccaggatgtgtttctatgaaaaccctctcatctctcctatctgcacaagc
acagggcaatgcagtgaggggaaaattagagaggaaacaaccatttgcag
ttcttttggctcacatgacgaggtgagagacctttcacccttattttatt
tgaaccaattgaatatttggtgacagttatccaaacaaaaggttttattt
ctgattttccctgtttttcttactccaaatttatttattattttaattct
ggtgattttgctaaacaaaaaaagcagggctggagagatggctcagcggt
aagagcattgactactcttctgaaggtctgagttcaaatcccagcaacca
catggtggctacaaccatctgtaatgagatctgacgcctctctggatggc
tgaagacagctacatgtacttcatataataataaatggatcttttttttt
ttaagcagtttttgggccccagagccaccttgaaaaaatccatcaaagaa
agtactgtggagt
taatgggcccagatgcatatccttaacatacaggaagtgttggatcctat
tccttctaagctgctgggagccaaccatgatgagcaaagcattctgggta
atgagtagctggtgacccactggaagacaggataatagtgactcctctgt
gactgaaccagaaactaagtgggagtgggtgagatcacaagcaaaatacc
agcgccatgttagccgagagggaagcagggagggaggagggggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_93310225_93311355
seq2: B6Ng01-106E15.b_43_1155

seq1  GAATTCCAGAGCCTTTCTATATAGCTGCACAGTGGAGACAAAAGCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCCTTTCTATATAGCTGCACAGTGGAGACAAAAGCAGAAA  50

seq1  CTAGAAACATCTCTCTTTAACTATTGCTTTATCTTGGTAACATGTAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAACATCTCTCTTTAACTATTGCTTTATCTTGGTAACATGTAATCC  100

seq1  TTTTCACTTTACATGGTACCACCCTGAATGCTACTATTTCTAAACTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTTACATGGTACCACCCTGAATGCTACTATTTCTAAACTTGGT  150

seq1  TTTGTTTTGGGTCTTTACAAAAGCTGTATTATCCCTCTTTAATCTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGGGTCTTTACAAAAGCTGTATTATCCCTCTTTAATCTTGTTT  200

seq1  TCTTACAACGTTTCTCATTGTATCTATTGGTGGTGGTGAGAACTCCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAACGTTTCTCATTGTATCTATTGGTGGTGGTGAGAACTCCAAGT  250

seq1  GCACAGTATTGGATTGCGTAGGCCCTGTCCACCTATAGCCACAGATGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTATTGGATTGCGTAGGCCCTGTCCACCTATAGCCACAGATGCAG  300

seq1  AGCCAGAGTCATTAAGGCTGCATAGCAGAAACTGGCTTCACCACTGCGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGTCATTAAGGCTGCATAGCAGAAACTGGCTTCACCACTGCGGT  350

seq1  TGGTACCTCGGAACACATGTAAATATTCCCTTTTAAAATAATAGTCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCTCGGAACACATGTAAATATTCCCTTTTAAAATAATAGTCTAAT  400

seq1  TTACCAGTTAAGTTACAGATGATTGGTGTTTACTCAAGAGGTAAATCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGTTAAGTTACAGATGATTGGTGTTTACTCAAGAGGTAAATCCTG  450

seq1  ACTATAAATAATAATTTCTGGGCTTTAAGTTTCACAGTGTATATATACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAATAATAATTTCTGGGCTTTAAGTTTCACAGTGTATATATACAC  500

seq1  TACACCCCTGGTTGGTGGAGTCACAGTGTTAAAGTTGGTGTTTTACTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCCTGGTTGGTGGAGTCACAGTGTTAAAGTTGGTGTTTTACTGTC  550

seq1  ATGTGACCCTGGAAATGGGTTTGGAGATGAGAGTGGCTTAGTGCGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCCTGGAAATGGGTTTGGAGATGAGAGTGGCTTAGTGCGTTTTT  600

seq1  CCAGGATGTGTTTCTATGAAAACCCTCTCATCTCTCCTATCTGCACAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGTGTTTCTATGAAAACCCTCTCATCTCTCCTATCTGCACAAGC  650

seq1  ACAGGGCAATGCAGTGAGGGGAAAATTAGAGAGGAAACAACCATTTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCAATGCAGTGAGGGGAAAATTAGAGAGGAAACAACCATTTGCAG  700

seq1  TTCTTTTGGCTCACATGACGAGGTGAGAGACCTTTCACCCTTATTTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGGCTCACATGACGAGGTGAGAGACCTTTCACCCTTATTTTATT  750

seq1  TGAACCAATTGAATATTTGGTGACAGTTATCCAAACAAAAGGTTTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAATTGAATATTTGGTGACAGTTATCCAAACAAAAGGTTTTATTT  800

seq1  CTGATTTTCCCTGTTTTTCTTACTCCAAATTTATTTATTATTTTAATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTCCCTGTTTTTCTTACTCCAAATTTATTTATTATTTTAATTCT  850

seq1  GGTGATTTTGCTAAACAAAAAAAGCAGGGCTGGAGAGATGGCTCAGCGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTGATTTTGCTAAACAAAAAAAGCAGGGCTGGAGAGATGGCTCAGCGG-  899

seq1  TAAGAGCATTGACTACTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAAC  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAGAGCATTGACTACTCTTCTGAAGGT-CTGAGTTCAAATCCCAGCAAC  948

seq1  CACATGGTGGCTTACAACCATCTGTAATGAGATCTGACGCCCTCTTCTGG  1000
      ||||||||||| ||||||||||||||||||||||||||| |||| |||||
seq2  CACATGGTGGC-TACAACCATCTGTAATGAGATCTGACG-CCTC-TCTGG  995

seq1  AGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATGAATC  1050
      | || ||||||||||||||| ||||||| |||||||| |||||||| |||
seq2  A-TGGCTGAAGACAGCTACA-TGTACTT-CATATAAT-AATAAATGGATC  1041

seq1  TTTTTTTTTTTTTAAAGCAGTTTTTGTGCACCAGTAGCTCAACTTTGAAA  1100
      |||||||||||   |||||||||||| || |||| ||  | || ||||||
seq2  TTTTTTTTTTT---AAGCAGTTTTTGGGCCCCAG-AG--CCACCTTGAAA  1085

seq1  AATATCCATTCAATAGAATGTACTGTGGAGT  1131
      || ||||| |||| |||| ||||||||||||
seq2  AA-ATCCA-TCAA-AGAAAGTACTGTGGAGT  1113

seq1: chr15_93442070_93442317
seq2: B6Ng01-106E15.g_75_322 (reverse)

seq1  CCCCTCCCCCTCCTCCCTCCCTGCTTCCCTCTCGGCTAACATGGCGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCTCCTCCCTCCCTGCTTCCCTCTCGGCTAACATGGCGCTGG  50

seq1  TATTTTGCTTGTGATCTCACCCACTCCCACTTAGTTTCTGGTTCAGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCTTGTGATCTCACCCACTCCCACTTAGTTTCTGGTTCAGTCAC  100

seq1  AGAGGAGTCACTATTATCCTGTCTTCCAGTGGGTCACCAGCTACTCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTCACTATTATCCTGTCTTCCAGTGGGTCACCAGCTACTCATTA  150

seq1  CCCAGAATGCTTTGCTCATCATGGTTGGCTCCCAGCAGCTTAGAAGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATGCTTTGCTCATCATGGTTGGCTCCCAGCAGCTTAGAAGGAAT  200

seq1  AGGATCCAACACTTCCTGTATGTTAAGGATATGCATCTGGGCCCATTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCAACACTTCCTGTATGTTAAGGATATGCATCTGGGCCCATTA  248