BAC Information

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BAC

Clone NameB6Ng01-106P21
Chromosome15 (Build37)
Map Location 19,957,431 - 20,065,911
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666857, EG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106P21.bB6Ng01-106P21.g
ACCDH914579DH914580
length1,1391,114
definitionDH914579|Mus musculus domesticus DNA, BAC clone: B6Ng01-106P21, 5' end.DH914580|Mus musculus domesticus DNA, BAC clone: B6Ng01-106P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,957,431 - 19,958,579)(20,064,770 - 20,065,911)
sequence
gaattcactagagagttttaaataaaagatgtcatgggaaatataaatgc
caattatgagcattaagaaggccagtaacatgatacttgtttttttttaa
agaattattaacaatgtctatggatccatattatctggaaaggcaatgct
tgaatgaccttccaagtaaaaagcagtcaattggttttaaagttatatgc
tttaaatgcatcgtttataaattcaaacatgtgctatgtgttggcatttt
ctatatatttggcaatgaatggtagagaagattttttctgttgaataaag
agaggcactttctgataagttataataaatataaatttaaaatatagttg
atttgcatgttcttggaaggaattttttaatgcttggatgcatttttcaa
gaatgttaactttgtgaaattttatatcatctgtttttcattttttatag
aagcttacaaagcctcaagaggaatatctgagtgattacaaactttgtac
aaccatacacacatatataaatatacctatgtaatgacctattcttccct
gaaaataaggactctccctggacagttcaaggctgattataggttttctt
ttcttttttatttttttccgagaggatttttattttctaatgagttcacg
tccatcattgttctgataagcttctttatgagatctctatagatgataat
gcaataactcttgaggcttacttgtactgtgtttcattatactcataaaa
atcaatacacataattaaaaaacagcaacaatacatttacttctttgaaa
tttactaaactgcaattcagtggcatgtaagtgagcataactttcgaaag
ctattgggaaattcttgcttcctcagtataataagaattgagaataagaa
taagaaattgaaaaacccagaacatagcaatctgcttgaaactatctctt
cacagtagttgagtaaattgccattataatcttgggtaatagcaagttct
atggctatctcaaagaaatttcagagagcaaataagacatcaagaatatt
tgcaatacaacttaggagtataaagtgattctatacaaatgttaaaatca
gcttcaaacaatgctcggacttagaaggaggatcttgca
gaattcagtttggttcctccaagtttcactagtttgaggggttaattgtt
ctgcatttccaaacaccaccatcttatggtagtgtcctgaattacacagg
gatttcattgtgataaattttaccagtggttgttttgagcaaaagaaggc
aatgcctaacaacagtagaagagaaaaggagaccctcaacaacaccaggt
ttcagttcataaaggggcatacacataagaaacggcagctttatttcctt
ttgaagtaagtttgaataataatgactgctttttctatatgaagcatcaa
ctgtgtgtgtgttgttaaagaatattttaactattaataattaatgggga
acattatctaaaactatcttttaaccaggtattaaatctaaaaatttaat
actcattcttgctttgaatttatttttaaagttagctggacagagatcta
agttattataatcctactgagttcaaaaatgtcttttgaaaagtatctac
atattctgtttctagattttcagtgtggatttctaccaagcagaatctac
aaaaattacaactttattcaaagtagcacagcagagaataagatttaaat
gtgcattatctgctcagtggatggagaaattatgatatatatgttcaatg
atacaaaagaaatcaaactcttttgacagaatggatagatgtggaaattt
ttaaattaagtcagtcaagcagagaaagacaagtgtctctctagagagca
taaggcttctacaaatattttaaaacagtttcttaataatcaatctttag
aatacccactgtctctggaaagcacgcttgtgagtggaagttcagctgtt
tttcaccgtaagcagttgcttgtcaactactctgagtagaatgaaagcat
caaagaagtgcttaaatttttgagttccttttatacttgaaaggcataga
gtctgttgatatgggagcattttgctctgccataaaagtaagaaacaaac
agactgataaaaaaaaaaacataagaaatctgttttttctctcaagacga
accattgatgtggatacctcagaactacttctttttgaatatctgtatcc
accagtatcaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_19957431_19958579
seq2: B6Ng01-106P21.b_47_1185

seq1  GAATTCACTAGAGAGTTTTAAATAAAAGATGTCATGGGAAATATAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGAGAGTTTTAAATAAAAGATGTCATGGGAAATATAAATGC  50

seq1  CAATTATGAGCATTAAGAAGGCCAGTAACATGATACTTGTTTTTTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGAGCATTAAGAAGGCCAGTAACATGATACTTGTTTTTTTTTAA  100

seq1  AGAATTATTAACAATGTCTATGGATCCATATTATCTGGAAAGGCAATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATTAACAATGTCTATGGATCCATATTATCTGGAAAGGCAATGCT  150

seq1  TGAATGACCTTCCAAGTAAAAAGCAGTCAATTGGTTTTAAAGTTATATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACCTTCCAAGTAAAAAGCAGTCAATTGGTTTTAAAGTTATATGC  200

seq1  TTTAAATGCATCGTTTATAAATTCAAACATGTGCTATGTGTTGGCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGCATCGTTTATAAATTCAAACATGTGCTATGTGTTGGCATTTT  250

seq1  CTATATATTTGGCAATGAATGGTAGAGAAGATTTTTTCTGTTGAATAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATTTGGCAATGAATGGTAGAGAAGATTTTTTCTGTTGAATAAAG  300

seq1  AGAGGCACTTTCTGATAAGTTATAATAAATATAAATTTAAAATATAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCACTTTCTGATAAGTTATAATAAATATAAATTTAAAATATAGTTG  350

seq1  ATTTGCATGTTCTTGGAAGGAATTTTTTAATGCTTGGATGCATTTTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATGTTCTTGGAAGGAATTTTTTAATGCTTGGATGCATTTTTCAA  400

seq1  GAATGTTAACTTTGTGAAATTTTATATCATCTGTTTTTCATTTTTTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTAACTTTGTGAAATTTTATATCATCTGTTTTTCATTTTTTATAG  450

seq1  AAGCTTACAAAGCCTCAAGAGGAATATCTGAGTGATTACAAACTTTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTACAAAGCCTCAAGAGGAATATCTGAGTGATTACAAACTTTGTAC  500

seq1  AACCATACACACATATATAAATATACCTATGTAATGACCTATTCTTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATACACACATATATAAATATACCTATGTAATGACCTATTCTTCCCT  550

seq1  GAAAATAAGGACTCTCCCTGGACAGTTCAAGGCTGATTATAGGTTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGGACTCTCCCTGGACAGTTCAAGGCTGATTATAGGTTTTCTT  600

seq1  TTCTTTTTTATTTTTTTCCGAGAGGATTTTTATTTTCTAATGAGTTCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTATTTTTTTCCGAGAGGATTTTTATTTTCTAATGAGTTCACG  650

seq1  TCCATCATTGTTCTGATAAGCTTCTTTATGAGATCTCTATAGATGATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATTGTTCTGATAAGCTTCTTTATGAGATCTCTATAGATGATAAT  700

seq1  GCAATAACTCTTGAGGCTTACTTGTACTGTGTTTCATTATACTCATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAACTCTTGAGGCTTACTTGTACTGTGTTTCATTATACTCATAAAA  750

seq1  ATCAATACACATAATTAAAAAACAGCAACAATACATTTACTTCTTTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATACACATAATTAAAAAACAGCAACAATACATTTACTTCTTTGAAA  800

seq1  TTTACTAAACTGCAATTCAGTGGCATGTAAGTGAGCATAACTTTCGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAAACTGCAATTCAGTGGCATGTAAGTGAGCATAACTTTCGAAAG  850

seq1  CTATT-GGAAATTCTTGCTTCCTCAGTATAATAAGAATTGAGAATAAGAA  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGGAAATTCTTGCTTCCTCAGTATAATAAGAATTGAGAATAAGAA  900

seq1  TAAGAAATTGAAAAACCCAGAACATAGCAATCTGCTTGAAACTATCTCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATTGAAAAACCCAGAACATAGCAATCTGCTTGAAACTATCTCTT  950

seq1  CACAGTAGTTGAGTAAATTGCCATTATAATCTT-GGTAATAGCAAGTTCT  998
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACAGTAGTTGAGTAAATTGCCATTATAATCTTGGGTAATAGCAAGTTCT  1000

seq1  ATGGCTATCTCAAAGAATATTTCAGAGAGGCAAATAAGACAATCAAGAAA  1048
      ||||||||||||||||| |||||||||| ||||||||||| |||||| ||
seq2  ATGGCTATCTCAAAGAA-ATTTCAGAGA-GCAAATAAGAC-ATCAAG-AA  1046

seq1  TATTTGCAAATACAACTTAGGGAGTATAAAAGTGATTCTATACAAATGTA  1098
      ||||||| ||||||||||| ||||||| ||||||||||||||||||||| 
seq2  TATTTGC-AATACAACTTA-GGAGTAT-AAAGTGATTCTATACAAATGTT  1093

seq1  AAATCCAGCTTCAAACAATTGCTTCAGACTTTAGTACAGGAGGATCTTGC  1148
      |||  ||||||||||||| ||| || ||| ||||   |||||||||||||
seq2  AAAATCAGCTTCAAACAA-TGC-TCGGAC-TTAG--AAGGAGGATCTTGC  1138

seq1  A  1149
      |
seq2  A  1139

seq1: chr15_20064770_20065911
seq2: B6Ng01-106P21.g_65_1178 (reverse)

seq1  TTGGTGATTACTGGTGGTATACCAGATATTCAATAAAGAAGTAGTTCTGG  50
      ||||||| ||||||||| ||| ||||||||||| ||||||||||||||| 
seq2  TTGGTGA-TACTGGTGG-ATA-CAGATATTCAA-AAAGAAGTAGTTCTGA  46

seq1  AGTATCCAACATCAAATGTGTTCTGTCTGTGAAGAGAAAAAAACAGATTT  100
       |||||| ||||| |||| |||| |||| || |||| |||||||||| ||
seq2  GGTATCC-ACATC-AATG-GTTC-GTCT-TG-AGAG-AAAAAACAGA-TT  88

seq1  TCTTTTATTGTTTTTTTTTTTTTTATCTAGTTCTGTTTTGTTTCTTTACT  150
      ||||       | |||||||||||||| || |||| |||||||| |||||
seq2  TCTT------ATGTTTTTTTTTTTATC-AG-TCTG-TTTGTTTC-TTACT  128

seq1  TTTTTATTGGCAGAGCAAAATGCTCCCATATCAACAGACTTCTATTGCCT  200
      |||    |||||||||||||||||||||||||||||||| |||| |||||
seq2  TTT---ATGGCAGAGCAAAATGCTCCCATATCAACAGAC-TCTA-TGCCT  173

seq1  TTCAAGTATTAAAAGGAACTCAAAAATTTAAGCACTTCTTTGATGCTTTC  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTA-TAAAAGGAACTCAAAAATTTAAGCACTTCTTTGATGCTTTC  222

seq1  ATTCTACTCAGAGTAGTTGACAAGCAACTGCTTACGGTGAAAAACAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACTCAGAGTAGTTGACAAGCAACTGCTTACGGTGAAAAACAGCTG  272

seq1  AACTTCCACTCACAAGCGTGCTTTCCAGAGACAGTGGGTATTCTAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCACTCACAAGCGTGCTTTCCAGAGACAGTGGGTATTCTAAAGAT  322

seq1  TGATTATTAAGAAACTGTTTTAAAATATTTGTAGAAGCCTTATGCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTAAGAAACTGTTTTAAAATATTTGTAGAAGCCTTATGCTCTCT  372

seq1  AGAGAGACACTTGTCTTTCTCTGCTTGACTGACTTAATTTAAAAATTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACACTTGTCTTTCTCTGCTTGACTGACTTAATTTAAAAATTTCC  422

seq1  ACATCTATCCATTCTGTCAAAAGAGTTTGATTTCTTTTGTATCATTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATCCATTCTGTCAAAAGAGTTTGATTTCTTTTGTATCATTGAAC  472

seq1  ATATATATCATAATTTCTCCATCCACTGAGCAGATAATGCACATTTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATCATAATTTCTCCATCCACTGAGCAGATAATGCACATTTAAAT  522

seq1  CTTATTCTCTGCTGTGCTACTTTGAATAAAGTTGTAATTTTTGTAGATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTCTGCTGTGCTACTTTGAATAAAGTTGTAATTTTTGTAGATTC  572

seq1  TGCTTGGTAGAAATCCACACTGAAAATCTAGAAACAGAATATGTAGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTAGAAATCCACACTGAAAATCTAGAAACAGAATATGTAGATAC  622

seq1  TTTTCAAAAGACATTTTTGAACTCAGTAGGATTATAATAACTTAGATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAAGACATTTTTGAACTCAGTAGGATTATAATAACTTAGATCTC  672

seq1  TGTCCAGCTAACTTTAAAAATAAATTCAAAGCAAGAATGAGTATTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCTAACTTTAAAAATAAATTCAAAGCAAGAATGAGTATTAAATT  722

seq1  TTTAGATTTAATACCTGGTTAAAAGATAGTTTTAGATAATGTTCCCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTTAATACCTGGTTAAAAGATAGTTTTAGATAATGTTCCCCATT  772

seq1  AATTATTAATAGTTAAAATATTCTTTAACAACACACACACAGTTGATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAATAGTTAAAATATTCTTTAACAACACACACACAGTTGATGCT  822

seq1  TCATATAGAAAAAGCAGTCATTATTATTCAAACTTACTTCAAAAGGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAGAAAAAGCAGTCATTATTATTCAAACTTACTTCAAAAGGAAAT  872

seq1  AAAGCTGCCGTTTCTTATGTGTATGCCCCTTTATGAACTGAAACCTGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGCCGTTTCTTATGTGTATGCCCCTTTATGAACTGAAACCTGGTG  922

seq1  TTGTTGAGGGTCTCCTTTTCTCTTCTACTGTTGTTAGGCATTGCCTTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGGGTCTCCTTTTCTCTTCTACTGTTGTTAGGCATTGCCTTCTT  972

seq1  TTGCTCAAAACAACCACTGGTAAAATTTATCACAATGAAATCCCTGTGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAAAACAACCACTGGTAAAATTTATCACAATGAAATCCCTGTGTA  1022

seq1  ATTCAGGACACTACCATAAGATGGTGGTGTTTGGAAATGCAGAACAATTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGACACTACCATAAGATGGTGGTGTTTGGAAATGCAGAACAATTA  1072

seq1  ACCCCTCAAACTAGTGAAACTTGGAGGAACCAAACTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCAAACTAGTGAAACTTGGAGGAACCAAACTGAATTC  1114