BAC Information

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BAC

Clone NameB6Ng01-107I05
Chromosome15 (Build37)
Map Location 32,715,921 - 32,911,580
singlet/doubletdoublet
Overlap geneLOC100040962, Sdc2
Upstream geneTas2r119, 0610007N19Rik, Sema5a
Downstream genePgcp, 1700084J12Rik, Tspyl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107I05.bB6Ng01-107I05.g
ACCDH914964DH914965
length1,1301,089
definitionDH914964|Mus musculus domesticus DNA, BAC clone: B6Ng01-107I05, 5' end.DH914965|Mus musculus domesticus DNA, BAC clone: B6Ng01-107I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,910,432 - 32,911,580)(32,715,921 - 32,716,832)
sequence
gaattctaaatgttccatttatccatggcagtcactgttgcagcctttct
aacctggtgtttctcctgctttggaaggtactcagtgtttctgggtctaa
tgggtggcatgacaaaacaacaccccaccacactcatcacagcactcatt
gatgaacctgttgctggcctcccagagttttggctttctgctccctcacc
tcataggtccttcttggtttgtactgtaaaagactatatatgcataccat
gttaggactacagatgccaaacactatttatcagaagccttactctataa
agctaagactcaacctaaattcacttctatgatgtagacaaacaagaaaa
ttcttttcagtatgatgatcctctgaggttctgaagtaccttctgaatca
aagaaatcatatcaggatggcttcatcaatggctgtgtttatcaagattt
aagtgtattcactcataaaacaagacattgaacttgaccactgctaataa
aattttcatctctaacactatggagactttttttttattaactggaaaat
acatcctatctctaccacatgaaatcaaaacagacatcccatttcaaaac
aagtttacatctgtgtaactattgtaattagtgagtgtgtatgtgaaatg
tgataaggtaaatgcaatgactaagtgaacgcctcaattttaggctcaat
ggctaaaatgttaccatggaacccaagcctggaatgtgtgaatgaaggtg
ataagggccagtgtcagataaaataatgctgaatttctgagctgaaagag
acttaaaaatcctgatctggcaactgcaacttttccagatcctgggtccc
gacagagactcttcaagttaagaccagctcatccttgggaccagcccact
gattccagacaccccaactctggaacaaagctccatcatagagccaaagc
acagtatgaaatgttgcagtccttgcctgacagtcattggagcctgctat
gaattatgccagattggaggtgagtgaagtgagttgtgaataaatgtgat
ccactctatgttattgtgtacgaataaacatagttaactgatcctccgag
tcactgccatctcttcctcactctgggttc
gaattcacacagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccattccccagctgaggagttctgaatccaggctggatcctt
ctcaacagtctgttttacgggaacacttcattaccatgacccgcagttct
ggttccagaatgagggatcttccttgcgccggtgatggtaaccgtcccag
gttttctcgtcccaggtcttctcgtcctaggtcttctcgtcccaggtctt
ctcgtcccgggtctcagcaccaactcttacccgcgttctcacgaccggcc
aggaagaacacagcaaaccgtaatcttctgcggcaaagctttattgctta
catcttcaggagccagagcgcaagagcgcaagagtgcaagagagcaagag
caagagagagagaaagaacaagaacaagaaagcaagagagcaagaatgag
aaaacaagagagagaaaaagaatggcaaaaccccgtcccttttaaggaga
attatcctccgcctaggacgtattactccctgattggctgcagcccatcg
gcccagttgtcatcacgagaaaggcagaacacatggcgggaaaactgccc
ctgcacgtgtgcagattatgtttaccacttagaacacagctgtcagcgcc
atcttataatggcaaatgtgagggcggctcccaacacccattcctttcct
tttgtttgtgttcttcactatgaaatacagataagtgttctttaagatct
ctaaccctcctgtgtctcttccatagagactgacaccatgtgagggaagg
ggtggtgtctataattctgctctacaaagcacagaactcagtaggagcca
ggacctggtaaagcattattaattctgagacttttagtcagggtgctgga
gggcttggcagacatgaattaatgggcactttctctcaactcagttttct
gggctcactgatggtagtagtatgcttggggttctctgaatcaccacctc
taagagccttggccagtgtagatggtgtcttgtagccagtaccaggaatg
ccaggaacaggagagggcttaaggtgggtggggaacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32910432_32911580
seq2: B6Ng01-107I05.b_48_1177 (reverse)

seq1  GAACCAAGAGTGAGAGAAAGAGAGTGGCAGTGACTCGGAGGATCAGGTTA  50
      ||||| |||||  ||| |||||| ||||||||||||||||||||| ||||
seq2  GAACCCAGAGT--GAGGAAGAGA-TGGCAGTGACTCGGAGGATCA-GTTA  46

seq1  TACTAGTGTTTATTCGTAAACAACAATAAAACAAATAGAAAGTGGGATCA  100
       |||| |||||||||||| |||| |       | ||||  ||| ||||||
seq2  -ACTA-TGTTTATTCGTACACAATA-------ACATAG--AGT-GGATCA  84

seq1  CATTTATTCACACACTCACTTCACTCACCTCCAATCTGGCATATGTCATA  150
      |||||||||||| ||||||||||||||||||||||||||||||  |||||
seq2  CATTTATTCACA-ACTCACTTCACTCACCTCCAATCTGGCATAATTCATA  133

seq1  GCCAGGCTCCAATGACTGTGCAGGCAAGGACTGCAACATTTCATACTGTG  200
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  G-CAGGCTCCAATGACTGT-CAGGCAAGGACTGCAACATTTCATACTGTG  181

seq1  CTTTGGCTCTATGATGGAGCTTTGTTCCAGAGTTGGGGTGTCTGGAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTCTATGATGGAGCTTTGTTCCAGAGTTGGGGTGTCTGGAATCA  231

seq1  GTGGGCTGGTCCCAAGGATGAGCTGGTCTTAACTTGAAGAGTCTCTGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGGTCCCAAGGATGAGCTGGTCTTAACTTGAAGAGTCTCTGTCG  281

seq1  GGACCCAGGATCTGGAAAAGTTGCAGTTGCCAGATCAGGATTTTTAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAGGATCTGGAAAAGTTGCAGTTGCCAGATCAGGATTTTTAAGTC  331

seq1  TCTTTCAGCTCAGAAATTCAGCATTATTTTATCTGACACTGGCCCTTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGCTCAGAAATTCAGCATTATTTTATCTGACACTGGCCCTTATC  381

seq1  ACCTTCATTCACACATTCCAGGCTTGGGTTCCATGGTAACATTTTAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATTCACACATTCCAGGCTTGGGTTCCATGGTAACATTTTAGCCA  431

seq1  TTGAGCCTAAAATTGAGGCGTTCACTTAGTCATTGCATTTACCTTATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCTAAAATTGAGGCGTTCACTTAGTCATTGCATTTACCTTATCAC  481

seq1  ATTTCACATACACACTCACTAATTACAATAGTTACACAGATGTAAACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACATACACACTCACTAATTACAATAGTTACACAGATGTAAACTTG  531

seq1  TTTTGAAATGGGATGTCTGTTTTGATTTCATGTGGTAGAGATAGGATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATGGGATGTCTGTTTTGATTTCATGTGGTAGAGATAGGATGTA  581

seq1  TTTTCCAGTTAATAAAAAAAAAGTCTCCATAGTGTTAGAGATGAAAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGTTAATAAAAAAAAAGTCTCCATAGTGTTAGAGATGAAAATTT  631

seq1  TATTAGCAGTGGTCAAGTTCAATGTCTTGTTTTATGAGTGAATACACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCAGTGGTCAAGTTCAATGTCTTGTTTTATGAGTGAATACACTTA  681

seq1  AATCTTGATAAACACAGCCATTGATGAAGCCATCCTGATATGATTTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGATAAACACAGCCATTGATGAAGCCATCCTGATATGATTTCTTT  731

seq1  GATTCAGAAGGTACTTCAGAACCTCAGAGGATCATCATACTGAAAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGAAGGTACTTCAGAACCTCAGAGGATCATCATACTGAAAAGAAT  781

seq1  TTTCTTGTTTGTCTACATCATAGAAGTGAATTTAGGTTGAGTCTTAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTTGTCTACATCATAGAAGTGAATTTAGGTTGAGTCTTAGCTT  831

seq1  TATAGAGTAAGGCTTCTGATAAATAGTGTTTGGCATCTGTAGTCCTAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGTAAGGCTTCTGATAAATAGTGTTTGGCATCTGTAGTCCTAACA  881

seq1  TGGTATGCATATATAGTCTTTTACAGTACAAACCAAGAAGGACCTATGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGCATATATAGTCTTTTACAGTACAAACCAAGAAGGACCTATGAG  931

seq1  GTGAGGGAGCAGAAAGCCAAAACTCTGGGAGGCCAGCAACAGGTTCATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAGCAGAAAGCCAAAACTCTGGGAGGCCAGCAACAGGTTCATCA  981

seq1  ATGAGTGCTGTGATGAGTGTGGTGGGGTGTTGTTTTGTCATGCCACCCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGCTGTGATGAGTGTGGTGGGGTGTTGTTTTGTCATGCCACCCAT  1031

seq1  TAGACCCAGAAACACTGAGTACCTTCCAAAGCAGGAGAAACACCAGGTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCAGAAACACTGAGTACCTTCCAAAGCAGGAGAAACACCAGGTTA  1081

seq1  GAAAGGCTGCAACAGTGACTGCCATGGATAAATGGAACATTTAGAATTC  1149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTGCAACAGTGACTGCCATGGATAAATGGAACATTTAGAATTC  1130

seq1: chr15_32715921_32716832
seq2: B6Ng01-107I05.g_258_1157

seq1  AACCGTCCCAGGTTTTCTCGTCCCAGGTCTTCTCGTCCTAGGTCTTCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTCCCAGGTTTTCTCGTCCCAGGTCTTCTCGTCCTAGGTCTTCTCG  50

seq1  TCCCAGGTCTTCTCGTCCCGGGTCTCAGCACCAACTCTTACCCGCGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTCTTCTCGTCCCGGGTCTCAGCACCAACTCTTACCCGCGTTCT  100

seq1  CACGACCGGCCAGGAAGAACACAACAAACCGGAATCTTCTGCGGCAAAGC  150
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CACGACCGGCCAGGAAGAACACAGCAAACCGTAATCTTCTGCGGCAAAGC  150

seq1  TTTATTGCTTACATCTTCAGGAGCCAGAGCGCAAGAGCGCAAGAGTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCTTACATCTTCAGGAGCCAGAGCGCAAGAGCGCAAGAGTGCAA  200

seq1  GAGAGCAAGAGCAAGAGAGAGAGAAAGAACAAGAACAAGAAAGCAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAGAGCAAGAGAGAGAGAAAGAACAAGAACAAGAAAGCAAGAGA  250

seq1  GCAAGAATGAGAAAACAAGAGAGAGAAAAAGAATGGCAAAACCCCGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATGAGAAAACAAGAGAGAGAAAAAGAATGGCAAAACCCCGTCCC  300

seq1  TTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCT  350

seq1  GCAGCCCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAACACATGGCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAACACATGGCGG  400

seq1  GAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACCACTTAGAACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACCACTTAGAACACAG  450

seq1  CTGTCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCCAACACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCCAACACCC  500

seq1  ATTCCTTTCCTTTTGTTTGTGTTCTTCACTATGAAATACAGATAAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTCCTTTTGTTTGTGTTCTTCACTATGAAATACAGATAAGTGTT  550

seq1  CTTTAAGATCTCTAACCCTCCTGTGTCTCTTCCATAGAGACTGACACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGATCTCTAACCCTCCTGTGTCTCTTCCATAGAGACTGACACCAT  600

seq1  GTGAGGGAAGGGGTGGTGTCTATAATTCTGCTCTACAAAGCACAGAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAAGGGGTGGTGTCTATAATTCTGCTCTACAAAGCACAGAACTC  650

seq1  AGTAGGAGCCAGGACCTGGTAAAGCATTATTAATTCTGAGACTTTTAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAGCCAGGACCTGGTAAAGCATTATTAATTCTGAGACTTTTAGTC  700

seq1  AGGGTGCTGGAGGGCTTGGCAGACATGAATTAATGGGCACTTTCTCTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTGGAGGGCTTGGCAGACATGAATTAATGGGCACTTTCTCTCAA  750

seq1  CTCAGTTTTTCTGGGCTCACTGATGGTAGGTAGTATGCTTGGGGTTCTCT  800
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCAG-TTTTCTGGGCTCACTGATGGTA-GTAGTATGCTTGGGGTTCTCT  798

seq1  GAATCCACCACCTCTAAGAGGCCTTGGCCAGGTTGTAGGATGGTGTCCTT  850
      |||| |||||||||||||| |||||||||||  |||| |||||||| |||
seq2  GAAT-CACCACCTCTAAGA-GCCTTGGCCAG--TGTA-GATGGTGT-CTT  842

seq1  GTAAAGCCAGTACCAGGGAATGCCAGGACCAGGAAGAGGGCTT-AGGTGG  899
      ||  ||||||||||| |||||||||||| |||| ||||||||| ||||||
seq2  GT--AGCCAGTACCA-GGAATGCCAGGAACAGG-AGAGGGCTTAAGGTGG  888

seq1  GTTGGGGAGCAGG  912
      | |||||| ||||
seq2  G-TGGGGAACAGG  900