BAC Information

Click to search

BAC

Clone NameB6Ng01-107J13
Chromosome15 (Build37)
Map Location 8,112,334 - 8,218,277
singlet/doubletdoublet
Overlap gene2410089E03Rik, LOC100039599
Upstream geneLifr, Egflam, Gdnf, Wdr70, LOC665556, LOC621001, Nup155
Downstream geneNipbl, EG666437, LOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107J13.bB6Ng01-107J13.g
ACCDH915020DH915021
length1,076421
definitionDH915020|Mus musculus domesticus DNA, BAC clone: B6Ng01-107J13, 5' end.DH915021|Mus musculus domesticus DNA, BAC clone: B6Ng01-107J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,112,334 - 8,113,236)(8,217,851 - 8,218,277)
sequence
gaattctcacttaaccatatggaactggaaaaaattactttgccaaaaac
aggatgccaagcatgtaagatctgtctatccacttgcaagaccacttcct
atattttatgaaaactgcaagctttcgggtccaagaaaaataaaccagag
ctggatatgcaagaagcataatcaaattctcagcaaactgaggaggaaat
catggaacttagccctataaatatgtgacccctgtagcacatagctagac
gcacagggacggaaaatgaagggatgtctcctgcggagactagcaacata
acaatgtctttgctttgccaacacttatatcctggatagtgaattctcaa
ccagtgtgaatatgacagatgaaatgtgagataagggagtaagaaaagta
aggctgtctgtctaggaaggcctccatttcatccagattctccagttttg
ttgagtaaaggcttttgtaataggatctgatgatttttttttttttaatt
ctctccgtttctgttgttacgtctcccttttcattggaggattttctaga
cagttaccaaagttaaatcaggatcggataaactatcgaaacagtcctgt
taactcctaaggaaatagaagcagtcatgaaaagtctcccaaccaaaaga
agcccagggccagatatggttttagcgcagaattccgtcagacattcaaa
gaagagctaatagcaatacttctcaaactatttcacaaaatagaaacaga
aggaacactacccaattcgttctatgaagtcgtagttacactaaaaccta
aaccacacaaagacccaacaaagaaagagaatttcagatcaatttccctt
atgaatattgatgcaaaatactcaataaattctcacaaactgaatcagag
aacacatcaacacgatcattcaccatgatcaagtaggcttcatcccaggg
attgcaggatagttcagtatatggaaatccatcaacataatccactattt
aacaaactcaagaaaaaaataaataatcatctcatagatgctgaaatgtc
tttgacaaaatacaacacccttcatg

ccacctcactctctgacggaactcctgcctcagctcgttgacaaagactt
ttgagaggtgaatgcttttacacctgcgtaggagcttctccctacagatg
actgtgtcgtcattgtctagtttgtattcagggacatctgtgatgattcc
tccgtgatgaacacttctgccacccgcacgtttctcactgacgcagcttg
gtaggttgtgttttttctacagagttctctgtttccaatcatcaaatctg
attgcatgtaactgcccacaacactccctcgagactcctcttatttctga
tcttaaaacatttgaggaggtttggttggttggttggttggttggttttt
ctaggtaacaaccctggctgtcgtggaactaattgctctggagaaaagtc
tggcttccatctcagacatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_8112334_8113236
seq2: B6Ng01-107J13.b_47_949

seq1  GAATTCTCACTTAACCATATGGAACTGGAAAAAATTACTTTGCCAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTTAACCATATGGAACTGGAAAAAATTACTTTGCCAAAAAC  50

seq1  AGGATGCCAAGCATGTAAGATCTGTCTATCCACTTGCAAGACCACTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCCAAGCATGTAAGATCTGTCTATCCACTTGCAAGACCACTTCCT  100

seq1  ATATTTTATGAAAACTGCAAGCTTTCGGGTCCAAGAAAAATAAACCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATGAAAACTGCAAGCTTTCGGGTCCAAGAAAAATAAACCAGAG  150

seq1  CTGGATATGCAAGAAGCATAATCAAATTCTCAGCAAACTGAGGAGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATATGCAAGAAGCATAATCAAATTCTCAGCAAACTGAGGAGGAAAT  200

seq1  CATGGAACTTAGCCCTATAAATATGTGACCCCTGTAGCACATAGCTAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACTTAGCCCTATAAATATGTGACCCCTGTAGCACATAGCTAGAC  250

seq1  GCACAGGGACGGAAAATGAAGGGATGTCTCCTGCGGAGACTAGCAACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGACGGAAAATGAAGGGATGTCTCCTGCGGAGACTAGCAACATA  300

seq1  ACAATGTCTTTGCTTTGCCAACACTTATATCCTGGATAGTGAATTCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCTTTGCTTTGCCAACACTTATATCCTGGATAGTGAATTCTCAA  350

seq1  CCAGTGTGAATATGACAGATGAAATGTGAGATAAGGGAGTAAGAAAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGAATATGACAGATGAAATGTGAGATAAGGGAGTAAGAAAAGTA  400

seq1  AGGCTGTCTGTCTAGGAAGGCCTCCATTTCATCCAGATTCTCCAGTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTCTGTCTAGGAAGGCCTCCATTTCATCCAGATTCTCCAGTTTTG  450

seq1  TTGAGTAAAGGCTTTTGTAATAGGATCTGATGATTTTTTTTTTTTTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAAAGGCTTTTGTAATAGGATCTGATGATTTTTTTTTTTTTAATT  500

seq1  CTCTCCGTTTCTGTTGTTACGTCTCCCTTTTCATTGGAGGATTTTCTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGTTTCTGTTGTTACGTCTCCCTTTTCATTGGAGGATTTTCTAGA  550

seq1  CAGTTACCAAAGTTAAATCAGGATCGGATAAACTATCGAAACAGTCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACCAAAGTTAAATCAGGATCGGATAAACTATCGAAACAGTCCTGT  600

seq1  TAACTCCTAAGGAAATAGAAGCAGTCATGAAAAGTCTCCCAACCAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCTAAGGAAATAGAAGCAGTCATGAAAAGTCTCCCAACCAAAAGA  650

seq1  AGCCCAGGGCCAGATATGGTTTTAGCGCAGAATTCCGTCAGACATTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGGCCAGATATGGTTTTAGCGCAGAATTCCGTCAGACATTCAAA  700

seq1  GAAGAGCTAATAGCAATACTTCTCAAACTATTTCACAAAATAGAAACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTAATAGCAATACTTCTCAAACTATTTCACAAAATAGAAACAGA  750

seq1  AGGAACACTACCCAATTCGTTCTATGAAGTCGTAGTTACACTAAAACCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACTACCCAATTCGTTCTATGAAGTCGTAGTTACACTAAAACCTA  800

seq1  AACCACACAAAGACCCAACAAAGAAAGAGAATTTCAGATCAATTTCCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACAAAGACCCAACAAAGAAAGAGAATTTCAGATCAATTTCCCTT  850

seq1  ATGAATATTGATGCAAAATACTCAATAAATTCTCACAAACTGAATCAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATTGATGCAAAATACTCAATAAATTCTCACAAACTGAATCAGAG  900

seq1  AAC  903
      |||
seq2  AAC  903


seq1: chr15_8217851_8218277
seq2: B6Ng01-107J13.g_64_490 (reverse)

seq1  TGATGTCTGAGATGGAGGCCAGACTGTTCTACAGAGCAGTTAGTTCCACG  50
      | |||||||||||||| |||||||| |||| ||||||| |||||||||||
seq2  TAATGTCTGAGATGGAAGCCAGACTTTTCTCCAGAGCAATTAGTTCCACG  50

seq1  ACAGCCAGGGTTGTTACCTAGAAAAACCAACCAACCAACCAACCAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGTTGTTACCTAGAAAAACCAACCAACCAACCAACCAACCAA  100

seq1  ACCTCCTCAAATGTTTTAAGATCAGAAATAAGAGGAGTCTCGAGGGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTCAAATGTTTTAAGATCAGAAATAAGAGGAGTCTCGAGGGAGTG  150

seq1  TTGTGGGCAGTTACATGCAATCAGATTTGATGATTGGAAACAGAGAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGCAGTTACATGCAATCAGATTTGATGATTGGAAACAGAGAACTC  200

seq1  TGTAGAAAAAACACAACCTACCAAGCTGCGTCAGTGAGAAACGTGCGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAAAAACACAACCTACCAAGCTGCGTCAGTGAGAAACGTGCGGGT  250

seq1  GGCAGAAGTGTTCATCACGGAGGAATCATCACAGATGTCCCTGAATACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGTGTTCATCACGGAGGAATCATCACAGATGTCCCTGAATACAA  300

seq1  ACTAGACAATGACGACACAGTCATCTGTAGGGAGAAGCTCCTACGCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACAATGACGACACAGTCATCTGTAGGGAGAAGCTCCTACGCAGGT  350

seq1  GTAAAAGCATTCACCTCTCAAAAGTCTTTGTCAACGAGCTGAGGCAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCATTCACCTCTCAAAAGTCTTTGTCAACGAGCTGAGGCAGGAG  400

seq1  TTCCGTCAGAGAGTGAGGTGGGAATTC  427
      |||||||||||||||||||||||||||
seq2  TTCCGTCAGAGAGTGAGGTGGGAATTC  427


| Home | SequenceCutter | Blast | Download |