BAC Information

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BAC

Clone NameB6Ng01-108A02
Chromosome15 (Build37)
Map Location 29,111,674 - 29,250,525
singlet/doubletdoublet
Overlap genenone
Upstream geneDnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108A02.bB6Ng01-108A02.g
ACCDH915306DH915307
length1,1081,144
definitionDH915306|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A02, 5' end.DH915307|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,111,674 - 29,112,800)(29,249,383 - 29,250,525)
sequence
gaattctcatgtttgttgaagtacatttggaagaagctgtgcagatagca
aaagaaagaagtgaaaaaatctcaaaggaagctgatagaaatttcccacc
atctgactaattcccttacttgcattgaagacagacctatagtgaagtga
actgattgtattgtaaatgcacgtaaatccaccactcttctggccttatt
tactcttgtcatataccctggagagtagagtgattaaatttcctcattat
tgctaatcacttgctatccgagtgtctgttatattctgagctttattgat
tgcaaatctgcctagtgatacactttccactggctgtgtctgcacatcag
ttccacaaatacatcccatgtcaaccatattaccttaaataacccactat
tccaatatcctattctgaggtacagtggcttcctcttagctatgaataat
atttttcaagactcttcctagatacctgaagctgaaaaatactgactctt
aaaatatatttcccacatacacccattatggtgcttcatttataaaaaaa
taagacactgacaataatttacagtttatggccacattaagctcaatgtt
tgacacatttccttattatataacaaatcatcactctaggtacattagat
cctctatggcatatttaaatttcttgctagcattacaaatattgcaaagt
taattaatggtttttagaatctaccaatggtagcacatacgattgatctt
ataactcaagttggccaccacttaatgaaccaccaggtaaggtactgttc
catcaaatgggattcttcctgtcccaggaagacttgaaaagaatgtcaca
agattccatggcactcccatgaaatgtagaaaatatcagaacttcacctc
tgaaaacttaattatttaatattatcagttactgatggccatgactaatt
aaactacagagacagtagaaatatttaaaatgtcaagtttattcaataaa
agtctttttggactatactttagaatatttgaagattttctattttattc
tacatggtattatgtaggtctttattcttaagtgcactgctactaagggt
gaattaaa
gaattccaattttctccaggatatgaacagtagaataaagtagtgataac
atttttaggaacagagtgactaaaggctgcaaataaatgaatgccatagt
ctgcctatatccctgtaaaaacaagcatcaggatctatatgtttatatcc
ctgtaaaaacaagcaccagtatctacatgtctatttccctataaaaaaca
gcaccagtaatacccatgaaatttgaaaaacattttccaaatttcacggg
cattaatgatgctgtgctctagctagtaatttttatagctaaataataaa
tatttaagcttcatcacaatcataatagtgacatacatatttgtttttta
ctatttagctataggattattcattcatatcttattagaaagatggtata
tactcacagataacctaaagattcaaaaaaatttaacagaaacaatgaaa
ataatataaagttactacaaaagctacttttcagccacgtggcagcttct
ctgtataaataaaatttactggagtttaggatgcctgcatatgtatgcac
tttctgtaagtattttcgtgctagattggcagaccacagcatttggtctc
aacacttaaaacactgacggccttgcattgtaccaaaagatatagccaac
tcctgacctataggatattattttaatatttattttatttctctgtgtat
taaatttatttccaataactgggatatttaacatttaaaagctgttaaat
ttttacatttcaaaaattttgtacacatttagcctctctagggaaacaag
attataggtatgtattaaaaattattttactggatagatagctcaagaga
tggctcagaggttaagggaagagcactggctgctcttcagaggtcctgaa
ttcaattcccagcaactacttggtggctcataaccatctataatcagatc
tggtatctctttgggcctacagtgatccacacaggcagaacagtgtatac
ttaataaataaatttttaaaaattgattcagtagctagcagcaaattcta
tttaaagccaatacaataaagcataccagactggtaacttataaattaca
aaggacttcatacttcagcaatcctaccctcccttcaattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29111674_29112800
seq2: B6Ng01-108A02.b_42_1149

seq1  GAATTCTCATGTTTGTTGAAGTACATTTGGAAGAAGCTGTGCAGATAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGTTTGTTGAAGTACATTTGGAAGAAGCTGTGCAGATAGCA  50

seq1  AAAGAAAGAAGTGAAAAAATCTCAAAGGAAGCTGATAGAAATTTCCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAGTGAAAAAATCTCAAAGGAAGCTGATAGAAATTTCCCACC  100

seq1  ATCTGACTAATTCCCTTACTTGCATTGAAGACAGACCTATAGTGAAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTAATTCCCTTACTTGCATTGAAGACAGACCTATAGTGAAGTGA  150

seq1  ACTGATTGTATTGTAAATGCACGTAAATCCACCACTCTTCTGGCCTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTGTATTGTAAATGCACGTAAATCCACCACTCTTCTGGCCTTATT  200

seq1  TACTCTTGTCATATACCCTGGAGAGTAGAGTGATTAAATTTCCTCATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGTCATATACCCTGGAGAGTAGAGTGATTAAATTTCCTCATTAT  250

seq1  TGCTAATCACTTGCTATCCGAGTGTCTGTTATATTCTGAGCTTTATTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATCACTTGCTATCCGAGTGTCTGTTATATTCTGAGCTTTATTGAT  300

seq1  TGCAAATCTGCCTAGTGATACACTTTCCACTGGCTGTGTCTGCACATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATCTGCCTAGTGATACACTTTCCACTGGCTGTGTCTGCACATCAG  350

seq1  TTCCACAAATACATCCCATGTCAACCATATTACCTTAAATAACCCACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAATACATCCCATGTCAACCATATTACCTTAAATAACCCACTAT  400

seq1  TCCAATATCCTATTCTGAGGTACAGTGGCTTCCTCTTAGCTATGAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATCCTATTCTGAGGTACAGTGGCTTCCTCTTAGCTATGAATAAT  450

seq1  ATTTTTCAAGACTCTTCCTAGATACCTGAAGCTGAAAAATACTGACTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAGACTCTTCCTAGATACCTGAAGCTGAAAAATACTGACTCTT  500

seq1  AAAATATATTTCCCACATACACCCATTATGGTGCTTCATTTATAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATTTCCCACATACACCCATTATGGTGCTTCATTTATAAAAAAA  550

seq1  TAAGACACTGACAATAATTTACAGTTTATGGCCACATTAAGCTCAATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACTGACAATAATTTACAGTTTATGGCCACATTAAGCTCAATGTT  600

seq1  TGACACATTTCCTTATTATATAACAAATCATCACTCTAGGTACATTAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATTTCCTTATTATATAACAAATCATCACTCTAGGTACATTAGAT  650

seq1  CCTCTATGGCATATTTAAATTTCTTGCTAGCATTACAAATATTGCAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATGGCATATTTAAATTTCTTGCTAGCATTACAAATATTGCAAAGT  700

seq1  TAATTAATGGTTTTTAGAATCTACCAATGGTAGCACATACGATTGATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATGGTTTTTAGAATCTACCAATGGTAGCACATACGATTGATCTT  750

seq1  ATAACTCAAGTTGGCCACCACTTAATGAACCACCAGGTAAGGTACTGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCAAGTTGGCCACCACTTAATGAACCACCAGGTAAGGTACTGTTC  800

seq1  CATCAAATGGGATTCTTCCTGTCCCAGGAAGACTTGAAAAGAATGTCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATGGGATTCTTCCTGTCCCAGGAAGACTTGAAAAGAATGTCACA  850

seq1  AGATTCCATGGCACTCCCATGAAATGTAGAAAATATCAGAACTTCACCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCATGGCACTCCCATGAAATGTAGAAAATATCAGAACTTCACCTC  900

seq1  TGAAAACTTAATTATTTAATATTATCAGTTACTGATGGCCATGACTAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTTAATTATTTAATATTATCAGTTACTGATGGCCATGACTAATT  950

seq1  AAAACTACAGAAGAACAGTAGAAAATATTTAAAATGTCAAGTTTTATTCA  1000
       ||||||||||   ||||||| ||||||||||||||||||| ||||||| 
seq2  -AAACTACAGA--GACAGTAG-AAATATTTAAAATGTCAAG-TTTATTC-  994

seq1  AATAAAAGTTCTTTTTGGACTAATAACTTTAGAATAATTTGAAAGATTTT  1050
      |||||||| |||||||||||||   |||||||||| ||||| ||||||||
seq2  AATAAAAG-TCTTTTTGGACTA--TACTTTAGAAT-ATTTG-AAGATTTT  1039

seq1  CTTAATTTTAATTTCTACATTGGTATTATGTAGGTTCTTTATTCTTTAAA  1100
      ||  ||||||  ||||||| |||||||||||||| |||||||||||  ||
seq2  CT--ATTTTA--TTCTACA-TGGTATTATGTAGG-TCTTTATTCTT--AA  1081

seq1  GTGCACTGCTACTAAGGGTGAATTAAA  1127
      |||||||||||||||||||||||||||
seq2  GTGCACTGCTACTAAGGGTGAATTAAA  1108

seq1: chr15_29249383_29250525
seq2: B6Ng01-108A02.g_62_1205 (reverse)

seq1  TTTTAATTGAAGG--AGGTAGGTATGCTGAAGTATGAAGT-CTTTGTAAT  47
      |||||||||||||   ||||||  |||||||||||||||| |||||||||
seq2  TTTTAATTGAAGGGAGGGTAGGATTGCTGAAGTATGAAGTCCTTTGTAAT  50

seq1  TTATAAGTTACAGTTTTGGTTATGCTTTATTGTATTGGCTTTAAATAGAA  97
      |||||||||||   | ||| ||||||||||||||||||||||||||||||
seq2  TTATAAGTTACCAGTCTGG-TATGCTTTATTGTATTGGCTTTAAATAGAA  99

seq1  TTTGCTGCTAGCTACTGAATCAATTTTTTAAAGATTTATTTATTAAGTAT  147
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  TTTGCTGCTAGCTACTGAATCAA-TTTTTAAAAATTTATTTATTAAGTAT  148

seq1  ACACTGTTCTGCCTGTGTGGATCACTGTAGG-CCAAAGAGGATACCAGAT  196
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  ACACTGTTCTGCCTGTGTGGATCACTGTAGGCCCAAAGA-GATACCAGAT  197

seq1  CTGATTATAGATGGTTATGAGCCACCAAGTAGTTGCTGGGAATTGAATTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTATAGATGGTTATGAGCCACCAAGTAGTTGCTGGGAATTGAATTC  247

seq1  AGGACCTCTGAAGAGCAGCCAGTGCTCTTCCCTTAACCTCTGAGCCATCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTCTGAAGAGCAGCCAGTGCTCTTCCCTTAACCTCTGAGCCATCT  297

seq1  CTTGAGCTATCTATCCAGTAAAATAATTTTTAATACATACCTATAATCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTATCTATCCAGTAAAATAATTTTTAATACATACCTATAATCTT  347

seq1  GTTTCCCTAGAGAGGCTAAATGTGTACAAAATTTTTGAAATGTAAAAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTAGAGAGGCTAAATGTGTACAAAATTTTTGAAATGTAAAAATT  397

seq1  TAACAGCTTTTAAATGTTAAATATCCCAGTTATTGGAAATAAATTTAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTTTTAAATGTTAAATATCCCAGTTATTGGAAATAAATTTAATA  447

seq1  CACAGAGAAATAAAATAAATATTAAAATAATATCCTATAGGTCAGGAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAATAAAATAAATATTAAAATAATATCCTATAGGTCAGGAGTT  497

seq1  GGCTATATCTTTTGGTACAATGCAAGGCCGTCAGTGTTTTAAGTGTTGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATATCTTTTGGTACAATGCAAGGCCGTCAGTGTTTTAAGTGTTGAG  547

seq1  ACCAAATGCTGTGGTCTGCCAATCTAGCACGAAAATACTTACAGAAAGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGCTGTGGTCTGCCAATCTAGCACGAAAATACTTACAGAAAGTG  597

seq1  CATACATATGCAGGCATCCTAAACTCCAGTAAATTTTATTTATACAGAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATATGCAGGCATCCTAAACTCCAGTAAATTTTATTTATACAGAGA  647

seq1  AGCTGCCACGTGGCTGAAAAGTAGCTTTTGTAGTAACTTTATATTATTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCACGTGGCTGAAAAGTAGCTTTTGTAGTAACTTTATATTATTTT  697

seq1  CATTGTTTCTGTTAAATTTTTTTGAATCTTTAGGTTATCTGTGAGTATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTCTGTTAAATTTTTTTGAATCTTTAGGTTATCTGTGAGTATAT  747

seq1  ACCATCTTTCTAATAAGATATGAATGAATAATCCTATAGCTAAATAGTAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTTCTAATAAGATATGAATGAATAATCCTATAGCTAAATAGTAA  797

seq1  AAAACAAATATGTATGTCACTATTATGATTGTGATGAAGCTTAAATATTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATATGTATGTCACTATTATGATTGTGATGAAGCTTAAATATTT  847

seq1  ATTATTTAGCTATAAAAATTACTAGCTAGAGCACAGCATCATTAATGCCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAGCTATAAAAATTACTAGCTAGAGCACAGCATCATTAATGCCC  897

seq1  GTGAAATTTGGAAAATGTTTTTCAAATTTCATGGGTATTACTGGTGCTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTTGGAAAATGTTTTTCAAATTTCATGGGTATTACTGGTGCTGT  947

seq1  TTTTTATAGGGAAATAGACATGTAGATACTGGTGCTTGTTTTTACAGGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAGGGAAATAGACATGTAGATACTGGTGCTTGTTTTTACAGGGA  997

seq1  TATAAACATATAGATCCTGATGCTTGTTTTTACAGGGATATAGGCAGACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACATATAGATCCTGATGCTTGTTTTTACAGGGATATAGGCAGACT  1047

seq1  ATGGCATTCATTTATTTGCAGCCTTTAGTCACTCTGTTCCTAAAAATGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTCATTTATTTGCAGCCTTTAGTCACTCTGTTCCTAAAAATGTT  1097

seq1  ATCACTACTTTATTCTACTGTTCATATCCTGGAGAAAATTGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTACTTTATTCTACTGTTCATATCCTGGAGAAAATTGGAATTC  1144