BAC Information

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BAC

Clone NameB6Ng01-109A02
Chromosome15 (Build37)
Map Location 79,450,054 - 79,603,620
singlet/doubletdoublet
Overlap gene4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4
Upstream genePscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1
Downstream geneNpcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109A02.bB6Ng01-109A02.g
ACCDH916039DH916040
length8171,089
definitionDH916039|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A02, 5' end.DH916040|Mus musculus domesticus DNA, BAC clone: B6Ng01-109A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,450,054 - 79,450,870)(79,602,518 - 79,603,620)
sequence
gaattcactctgtagtccaggctggcctcgaactcagaaatccacctgcc
tctgcctcccaagtgctgagactaaaggcgtgcgccaccactgcccggct
tctgttctttttaaggccgctgtcacagaatgaaatgttggagcatttcc
tggagcttccctagaagtactctgaatctcaggcactctgccccagatat
ggtagaggccatgtgcaacggactcacaggaaactctcttctccaggaat
ggccctgtgtggggtctcctgtgcagccctcattaagggcacacaggctc
cgcccccacactgggaggtccagcagctgccaggccccgcccccacacta
ggaggcccagcagctgcctgatagatggtcttggttgctcaccattttcc
ggccgcaaactttctggctgaaatgtcttgtgttgctggggtactgtagt
gccctgattcgtgtccccatatgtccccttcaccagccaacaccttcgag
cgaggcactaggttagaactactctgccaggcatgtgctagtactggtca
cattcatggaagagacacccacacccttcacagcctaagtgcagagcctg
gatggcatggataagataagagacagagcttcaggctgcccaatgtcaaa
gctaatgctcccgacctgtgctctattagagaaacaagtagtaatgtccc
caaagagtcctacccaaccggagtcatctcccacacagccactttcatcc
tggctatggaagagcatcacttcgatgttgatatccaaggggacgggagg
tgtgtaaagttgttgtt
gaattcttggggtacaggagtgaggaaactgaaagaggttggtacagtga
tacgaggattcatagcttcccttttccaaccatccatgactctgccatct
tttcctcctgactaaatgtctccatttgcattttgccagctgctagcatc
aagctggcctgcctatctgttctacctggtttcttccatgctctggtagg
ctcatccctctgagaaagttatcaagttaccttgattctctctccgtggg
gtatcacaccctccccattcctgagaccattctggcctcttaggcctgtt
ttctgggctgatcgctgtagcttcctggctgccatccctgtcaatccaac
tccccaacctctgtgctgccagccaccctgaaagctccaagaagccaggc
aaggtcgtgatgcttgcaacccaagggcttggctgtgtcagcagtatcac
aagttcaaggtcatcaggagctcagtggttcagtgagttcaaagccaccc
tgtgttatgtgagagcaaaaacagaatccaaggttgttttttttttaaat
ttttttattaagtattttcttcatttacatttccaatgctatcccaaaag
tcccccataccctcccccgccactcccctacccacccactcccacttctt
ggtcctggcgttccccagtactgaagcaaataaagtttgcaagaccaatg
ggcctctctttccaatgatggccgactaggccatcttctgatacatatgc
agctagagacacgagctctggggggtactggttagttcatattgttgttc
cacctataggattgcagacccctttagctccttgggtactttctctagct
cctccattggggatcccatgatccatccaatagctgactgtgagcatcca
gtaagaatccaagtttttatgcctggttttagggctctctacaccttcac
aacccaccccagctttttttccccctcctttctcattgagtctttctcca
gtcttgggaagccttgaactttcccttggccactgcattgctctagtcgg
atctcctcctaggcaatgacagtcctttctgccacaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_79450054_79450870
seq2: B6Ng01-109A02.b_49_865

seq1  GAATTCACTCTGTAGTCCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGTCCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGAGACTAAAGGCGTGCGCCACCACTGCCCGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGAGACTAAAGGCGTGCGCCACCACTGCCCGGCT  100

seq1  TCTGTTCTTTTTAAGGCCGCTGTCACAGAATGAAATGTTGGAGCATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTTTTTAAGGCCGCTGTCACAGAATGAAATGTTGGAGCATTTCC  150

seq1  TGGAGCTTCCCTAGAAGTACTCTGAATCTCAGGCACTCTGCCCCAGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTTCCCTAGAAGTACTCTGAATCTCAGGCACTCTGCCCCAGATAT  200

seq1  GGTAGAGGCCATGTGCAACGGACTCACAGGAAACTCTCTTCTCCAGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGGCCATGTGCAACGGACTCACAGGAAACTCTCTTCTCCAGGAAT  250

seq1  GGCCCTGTGTGGGGTCTCCTGTGCAGCCCTCATTAAGGGCACACAGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGTGTGGGGTCTCCTGTGCAGCCCTCATTAAGGGCACACAGGCTC  300

seq1  CGCCCCCACACTGGGAGGTCCAGCAGCTGCCAGGCCCCGCCCCCACACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCCACACTGGGAGGTCCAGCAGCTGCCAGGCCCCGCCCCCACACTA  350

seq1  GGAGGCCCAGCAGCTGCCTGATAGATGGTCTTGGTTGCTCACCATTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCCAGCAGCTGCCTGATAGATGGTCTTGGTTGCTCACCATTTTCC  400

seq1  GGCCGCAAACTTTCTGGCTGAAATGTCTTGTGTTGCTGGGGTACTGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCAAACTTTCTGGCTGAAATGTCTTGTGTTGCTGGGGTACTGTAGT  450

seq1  GCCCTGATTCGTGTCCCCATATGTCCCCTTCACCAGCCAACACCTTCGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGATTCGTGTCCCCATATGTCCCCTTCACCAGCCAACACCTTCGAG  500

seq1  CGAGGCACTAGGTTAGAACTACTCTGCCAGGCATGTGCTAGTACTGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCACTAGGTTAGAACTACTCTGCCAGGCATGTGCTAGTACTGGTCA  550

seq1  CATTCATGGAAGAGACACCCACACCCTTCACAGCCTAAGTGCAGAGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGGAAGAGACACCCACACCCTTCACAGCCTAAGTGCAGAGCCTG  600

seq1  GATGGCATGGATAAGATAAGAGACAGAGCTTCAGGCTGCCCAATGTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCATGGATAAGATAAGAGACAGAGCTTCAGGCTGCCCAATGTCAAA  650

seq1  GCTAATGCTCCCGACCTGTGCTCTATTAGAGAAACAAGTAGTAATGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGCTCCCGACCTGTGCTCTATTAGAGAAACAAGTAGTAATGTCCC  700

seq1  CAAAGAGTCCTACCCAACCGGAGTCATCTCCCACACAGCCACTTTCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTCCTACCCAACCGGAGTCATCTCCCACACAGCCACTTTCATCC  750

seq1  TGGCTATGGAAGAGCATCACTTCGATGTTGATATCCAAGGGGACGGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGGAAGAGCATCACTTCGATGTTGATATCCAAGGGGACGGGAGG  800

seq1  TGTGTAAAGTTGTTGTT  817
      |||||||||||||||||
seq2  TGTGTAAAGTTGTTGTT  817

seq1: chr15_79602518_79603620
seq2: B6Ng01-109A02.g_66_1154 (reverse)

seq1  GTTTGTGGCAGAAAGGCCCTGTCATATGGGCATAGGAGGAGACTCCGGAC  50
      ||||||||||||||||  |||||||    || |||||||||| ||| |||
seq2  GTTTGTGGCAGAAAGG-ACTGTCAT---TGCCTAGGAGGAGA-TCC-GAC  44

seq1  TGAGAAGCAATGCAGTGGACCCAAGAGAAAGTTCAAGGCTTCCCAGGACT  100
      | || |||||||||||||  ||||| ||||||||||||||||||| ||||
seq2  T-AG-AGCAATGCAGTGG--CCAAGGGAAAGTTCAAGGCTTCCCAAGACT  90

seq1  GGGAGAAAGAACACAATTGAGAAAGGAGGGGGGAAAAAAAGCTGGGGGTG  150
       |||||||| || ||| |||||||||| ||||||||||||||| ||||||
seq2  -GGAGAAAG-ACTCAA-TGAGAAAGGA-GGGGGAAAAAAAGCT-GGGGTG  135

seq1  GGTTGTGGAAGTGTAGAGAGCCCTAAAACCCAGGCATAAAAACTTGGATT  200
      ||||||| | |||||||||||||||||| |||||||||||||||||||||
seq2  GGTTGTGAAGGTGTAGAGAGCCCTAAAA-CCAGGCATAAAAACTTGGATT  184

seq1  C-TACTGGATGCTCACAGTCAGCTATTGGATGGATCATGGGATCCCCAAT  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGGATGCTCACAGTCAGCTATTGGATGGATCATGGGATCCCCAAT  234

seq1  GGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAATCCTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAATCCTAT  284

seq1  AGGTGGAACAACAATATGAACTAACCAGTA-CCCCCAGAGCTCGTGTCTC  348
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGTGGAACAACAATATGAACTAACCAGTACCCCCCAGAGCTCGTGTCTC  334

seq1  TAGCTGCATATGTATCAGAAGATGGCCTAGTCGGCCATCATTGGAAAGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCATATGTATCAGAAGATGGCCTAGTCGGCCATCATTGGAAAGAG  384

seq1  AGGCCCATTGGTCTTGCAAACTTTATTTGCTTCAGTACTGGGGAACGCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCATTGGTCTTGCAAACTTTATTTGCTTCAGTACTGGGGAACGCCA  434

seq1  GGACCAAGAAGTGGGAGTGGGTGGGTAGGGGAGTGGCGGGGGAGGGTATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAGAAGTGGGAGTGGGTGGGTAGGGGAGTGGCGGGGGAGGGTATG  484

seq1  GGGGACTTTTGGGATAGCATTGGAAATGTAAATGAAGAAAATACTTAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTTTGGGATAGCATTGGAAATGTAAATGAAGAAAATACTTAATA  534

seq1  AAAAAATTTAAAAAAAAAACAACCTTGGATTCTGTTTTTGCTCTCACATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTTAAAAAAAAAACAACCTTGGATTCTGTTTTTGCTCTCACATA  584

seq1  ACACAGGGTGGCTTTGAACTCACTGAACCACTGAGCTCCTGATGACCTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGTGGCTTTGAACTCACTGAACCACTGAGCTCCTGATGACCTTG  634

seq1  AACTTGTGATACTGCTGACACAGCCAAGCCCTTGGGTTGCAAGCATCACG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGATACTGCTGACACAGCCAAGCCCTTGGGTTGCAAGCATCACG  684

seq1  ACCTTGCCTGGCTTCTTGGAGCTTTCAGGGTGGCTGGCAGCACAGAGGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCTGGCTTCTTGGAGCTTTCAGGGTGGCTGGCAGCACAGAGGTT  734

seq1  GGGGAGTTGGATTGACAGGGATGGCAGCCAGGAAGCTACAGCGATCAGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTTGGATTGACAGGGATGGCAGCCAGGAAGCTACAGCGATCAGCC  784

seq1  CAGAAAACAGGCCTAAGAGGCCAGAATGGTCTCAGGAATGGGGAGGGTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACAGGCCTAAGAGGCCAGAATGGTCTCAGGAATGGGGAGGGTGT  834

seq1  GATACCCCACGGAGAGAGAATCAAGGTAACTTGATAACTTTCTCAGAGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCCACGGAGAGAGAATCAAGGTAACTTGATAACTTTCTCAGAGGG  884

seq1  ATGAGCCTACCAGAGCATGGAAGAAACCAGGTAGAACAGATAGGCAGGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCTACCAGAGCATGGAAGAAACCAGGTAGAACAGATAGGCAGGCC  934

seq1  AGCTTGATGCTAGCAGCTGGCAAAATGCAAATGGAGACATTTAGTCAGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGATGCTAGCAGCTGGCAAAATGCAAATGGAGACATTTAGTCAGGA  984

seq1  GGAAAAGATGGCAGAGTCATGGATGGTTGGAAAAGGGAAGCTATGAATCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGATGGCAGAGTCATGGATGGTTGGAAAAGGGAAGCTATGAATCC  1034

seq1  TCGTATCACTGTACCAACCTCTTTCAGTTTCCTCACTCCTGTACCCCAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATCACTGTACCAACCTCTTTCAGTTTCCTCACTCCTGTACCCCAAG  1084

seq1  AATTC  1103
      |||||
seq2  AATTC  1089