BAC Information

Click to search

BAC

Clone NameB6Ng01-109D20
Chromosome15 (Build37)
Map Location 44,952,920 - 44,953,991
singlet/doubletsinglet
Overlap genenone
Upstream geneTrhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109D20.bB6Ng01-109D20.g
ACCDH916199DH916200
length1,1261,242
definitionDH916199|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D20, 5' end.DH916200|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatgaaactgaagacacagaatattcaaatttaggggacaaact
taaaacagtgctcagaggaaaattcttagcactaactcattcataaagaa
attagagagattctacaaaagctaattaacagaacacatgaaagctctat
aacaaaaagaagtaaacacacccaggaagagtagactgcaggaaatagta
aaactcagggctgaaatcaaccagttagaaacaaagagaacaatactccc
caacacacacacacacacacacacacacacacacacacacacacacacac
aaaaacacctcgacaaaccaagaggtgattctttgaaaagaatcaacaag
atagataaacccttaaccaaattaagtaaaaggcacagagacaacatcta
aatttacaaaatcaaaaatgaaaagggcagcaaaacaacagaaactgagg
agattcaaaaaattcatcagatcttactacaaaagtctacactgggcaaa
agagataaatgaaatgggtaattttctagatagataacatgtacgaaagt
taaattattaagtcacagcttcagacaggcaccaggtccgcacaagatgg
gcactcagtagacaggaagacacagagaaagattcaggaggcctcatgtc
tcagtactgagctatttaccactgatggatttaaggagaggaggtttgtt
gccttcatttccatgattttttgtaagcagtaataaagctgtgtgctatt
agaaaaataaaatatcagtagcttactaaagcagataaatttgatcaaac
aaaaatgagaacagatataatgtttgtaatgtttgactttccctggattc
ctacttttttagatttctgggaaatctgtttgtgggagaactgtgaggcc
atatctaaaactgagatgtcaatcagattcagtggtgagagagccatatg
gctgcctgtatttccaatgtgaaagaatgacaaattaaacactaagttac
taccattaaaattttcctctacgtgtatagaaaatatacaactgatcaaa
tgattcaccttaatgtttaagaccttgtcatgccttgtgcatgcctacac
cttaggacattgggggctgaagcagg
gaattcaggtaaacagatagaaaaccttaaagaggaaacacaaaaattcc
ttaaagaattacaggaaaatacaaccaaacaggtaaaggaattgaacaaa
ccttccaggatctaaaaatggaaataaaaacaataaagaaatcacaaagg
gagacaacactggagatagaaaacctaggaaagagatcaggaaccataga
tgcaagaatcaccaacagaatataagagatagaagaaagaaactcgaggg
cagaagataccaaagaaaatgttgacacaatagtgaaagaaaatacaaaa
tgcaaaaaggtcttaacccaaaacatctaggaaatccaggacataatgag
aaggccaaacctaaggataataggtatagaaaagcgtggagattcccaac
ttaagggccagtaaatatcttgaacaaaactgtagaagaaaacttaccta
acctaaagaaagagatgcccatcaatatacaagaagactacagaattcca
tatagattggaccaaaatagaaattcctcctgtcacataatagtcaacac
accaaatgtgcaaaacaaagaaagaatattaaaagcagtaagggaaaaaa
ggtcaaataatgtataaaggcacacctatcagaattataccagatttttc
accagagactatgaatgctagaaactcctgggaagatgtcatactgaccc
taagagaacataaatgccagcccaggttactatactgagaaaaactctta
attaccatagatggagaaaccaagatattccatgaaaaaaaccaaacgaa
cacaataactgtccacaaatccatccctacaaaggataatacaaaattcc
aaaacaagaaggaaagctacaccctagaaaaagcaagaaagtgatttttc
aacaaaccccaagagatagttacacaaacataaaataacataaaaaatat
tcaggaaggaacaatcactgttccttaataccttcttaacattaatggat
tcaattctccaataagaacaccatagactatcagactggattatgtaaag
agggaatccaagcacttgctgtatacagaaaatgccatctcagtgttcaa
gaaaagaacaattaacctcagagaggtaaggctagaaaaaaaattttcaa
gccaattgttcagaaaacaggctgaggtagccactctaaattgcttaaaa
tcgaacttccaactcgaaaatattatggtgaaagagaattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_44952920_44953991
seq2: B6Ng01-109D20.b_106_1174 (reverse)

seq1  CCTGCTTCAGCCCCCCAAATGCTAAGGTGTTAGGCATGCACAAAGCATGA  50
      ||||||||||||||| |  | |||||||| ||||||||||||| ||||||
seq2  CCTGCTTCAGCCCCCAATGTCCTAAGGTG-TAGGCATGCACAAGGCATGA  49

seq1  CAAGGTCTTAAAACATAAGGTGAATTCATTTGATCCAGTGTATATTTTCT  100
      ||||||||||||   ||||||||| ||||||||||   ||||||||||||
seq2  CAAGGTCTTAAACATTAAGGTGAA-TCATTTGATCAGTTGTATATTTTCT  98

seq1  ATACACGTTAGA-GAAAATTTTAATGGTAGTAACTTAGTGTTTAATTTGT  149
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  ATACACG-TAGAGGAAAATTTTAATGGTAGTAACTTAGTGTTTAATTTGT  147

seq1  CATTCTTTCAACATTGGAAATACAGGCAGCCATATGGCTTCTCTCACCAC  199
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  CATTCTTTC-ACATTGGAAATACAGGCAGCCATATGGC-TCTCTCACCAC  195

seq1  TGAATCTGATTGACATCTCAGTTTTAGATATGGCCTCACAGTTCTCCCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGATTGACATCTCAGTTTTAGATATGGCCTCACAGTTCTCCCAC  245

seq1  AAACAGATTTCCCAGAAATCTAAAAAAGTAGGAATCCAGGGAAAGTCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATTTCCCAGAAATCTAAAAAAGTAGGAATCCAGGGAAAGTCAAA  295

seq1  CATTAC-AACATTATATCTGTTCTCATTTTTGTTTGATCAAATTTATCTG  348
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAAACATTATATCTGTTCTCATTTTTGTTTGATCAAATTTATCTG  345

seq1  CTTTAGTAAGCTACTGATATTTTATTTTTCTAATAGCACACAGCTTTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTAAGCTACTGATATTTTATTTTTCTAATAGCACACAGCTTTATT  395

seq1  ACTGCTTACAAAAAATCATGGAAATGAAGGCAACAAACCTCCTCTCCTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTACAAAAAATCATGGAAATGAAGGCAACAAACCTCCTCTCCTTA  445

seq1  AATCCATCAGTGGTAAATAGCTCAGTACTGAGACATGAGGCCTCCTGAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATCAGTGGTAAATAGCTCAGTACTGAGACATGAGGCCTCCTGAAT  495

seq1  CTTTCTCTGTGTCTTCCTGTCTACTGAGTGCCCATCTTGTGCGGACCTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGTGTCTTCCTGTCTACTGAGTGCCCATCTTGTGCGGACCTGG  545

seq1  TGCCTGTCTGAAGCTGTGACTTAATAATTTAACTTTCGTACATGTTATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCTGAAGCTGTGACTTAATAATTTAACTTTCGTACATGTTATCT  595

seq1  ATCTAGAAAATTACCCATTTCATTTATCTCTTTTGCCCAGTGTAGACTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAAATTACCCATTTCATTTATCTCTTTTGCCCAGTGTAGACTTT  645

seq1  TGTAGTAAGATCTGATGAATTTTTTGAATCTCCTCAGTTTCTGTTGTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAAGATCTGATGAATTTTTTGAATCTCCTCAGTTTCTGTTGTTTT  695

seq1  GCTGCCCTTTTCATTTTTGATTTTGTAAATTTAGATGTTGTCTCTGTGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTTTTCATTTTTGATTTTGTAAATTTAGATGTTGTCTCTGTGCC  745

seq1  TTTTACTTAATTTGGTTAAGGGTTTATCTATCTTGTTGATTCTTTTCAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTAATTTGGTTAAGGGTTTATCTATCTTGTTGATTCTTTTCAAA  795

seq1  GAATCACCTCTTGGTTTGTCGAGGTGTTTTTGTGTGTGTGTGTGTGTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACCTCTTGGTTTGTCGAGGTGTTTTTGTGTGTGTGTGTGTGTGTG  845

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGAGTATTGTTCTCTTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGAGTATTGTTCTCTTTG  895

seq1  TTTCTAACTGGTTGATTTCAGCCCTGAGTTTTACTATTTCCTGCAGTCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACTGGTTGATTTCAGCCCTGAGTTTTACTATTTCCTGCAGTCTA  945

seq1  CTCTTCCTGGGTGTGTTTACTTCTTTTTGTTATAGAGCTTTCATGTGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTGGGTGTGTTTACTTCTTTTTGTTATAGAGCTTTCATGTGTTC  995

seq1  TGTTAATTAGCTTTTGTAGAATCTCTCTAATTTCTTTATGAATGAGTTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTAGCTTTTGTAGAATCTCTCTAATTTCTTTATGAATGAGTTAG  1045

seq1  TGCTAAGAATTTTCCTCTGAGCAC  1072
      ||||||||||||||||||||||||
seq2  TGCTAAGAATTTTCCTCTGAGCAC  1069