BAC Information

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BAC

Clone NameB6Ng01-109E20
Chromosome15 (Build37)
Map Location 5,802,081 - 5,949,224
singlet/doubletdoublet
Overlap geneLOC666319, LOC100039358
Upstream geneLOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291
Downstream geneLOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109E20.bB6Ng01-109E20.g
ACCDH916244DH916245
length7591,026
definitionDH916244|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E20, 5' end.DH916245|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,948,467 - 5,949,224)(5,802,081 - 5,803,122)
sequence
gaattctctacactagtttgtctagctactgaaaccttcacagctaataa
atgagatttggagatttgtttaacatcctgtgtgtgctcctgatcacttg
aatttcagacttttctttcaatgtgtaatacatagaacactataactcaa
agtttaccccaaaagagcatagacatggcaacaattatgctccatcatcg
gagagcccattcaggaactaaggtagccatttcttactttttaaatcact
taacacgtttgtttgctacttatatttctaagtaaaacctataattttta
atacattcttaacatgccttttgacacttttatgatttaatattgagtaa
tttttatttgccttaatgttttgaatttgttttgactttaattttctgag
ttttgtttattttttagagagaaataatatggagttaggtgggtaagaag
gttgaaaaaatctgggaggagtttggggaacagatagaatatgaacaaat
tataatgtagaaggaatattatataaaattaaatttaaaaataagaagtc
atttatttccattttttctcatcttatctgtttactgacttttgtatctg
ctgtgatgccagtcactgaggtagatgccagtcactggttttttatcact
ggggaaagactgtcacatgttcccaaattttggaatgtgtgatcgataga
aggcaaaaagtaatagttgtctctcaaatcataattttaaacaagtgttg
tgtccggcc
gaattcttagccttttctaaaattagggaatctctagaaaatattttcaa
aatagttttctggagaattaatttctggagaattaatacaatcgtttact
tagaataattgtggcctaaattcaaaaacaaaaaacaaaaacaaaacaac
aaacaaaaaaaaacaaaaagcaaatcacttttgtggaaggttctttgaaa
ctatcaggctctctttactatgatggtaagagtattgatcattacaataa
tttatgatcttctcccatcatcataataatggtagaggtatcttcaaaaa
tggggactggaacaactaaaatttaccagagatagtgcatatctagacga
acaggagtaaacatggaagcaggaaagctgagaatctacaaattgtattt
ctattttagcttaaataagacagacctctactttgtgtatttacaagaaa
acacctcaagaataaaccttgtcattaatcatccatatcctatgtccttc
ctctctatgatctggccctctctgaaaacaaaagggttggcagacatctt
agctctgctgggagtcctcgagagcatttgaaactgcagccaggcaccaa
ccagcacaagtgcttgcccgctcagaaagcctgattggaaacgtgtgact
tacatacctcatatgactttcagataacatagcattgacccagagctaag
agaataggatttgccctgaatgggaatgacaagtaggatagataaggaag
aacatggaagtgctggaggaattttgcctatgagtaagaagagtggcagc
tttactgtggatgtttgccccaacccataatctactcagtgaatggctgg
ggtcttctgaggcttcagacagcagcagcagtgaggctggaagcccgcat
gcagactgcgtcctcatgcacacccactgtgaagcagcttagcagatgtt
tcctgaggatttcccagtctacataacgtttttttttgtttgtttgtggt
ttgtggttgtgggtcaacagggtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_5948467_5949224
seq2: B6Ng01-109E20.b_45_803 (reverse)

seq1  GGCCGGACACAACACTTGTTTTAAATTATGATTTGAGAGACAACTATTAC  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCCGGACACAACACTTGTTTAAAATTATGATTTGAGAGACAACTATTAC  50

seq1  TTTTTGCCTTCTTTCGATCACACATTCCAAAATTTGGGAACATGTGACAG  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCTTCTATCGATCACACATTCCAAAATTTGGGAACATGTGACAG  100

seq1  TCTTTCCCCAGTGAT-AAAAACCAGTGACTGGCATCTACCTCAGTGACTG  149
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCCAGTGATAAAAAACCAGTGACTGGCATCTACCTCAGTGACTG  150

seq1  GCATCACAGCAGATACAAAAGTCAGTAAACAGATAAGATGAGAAAAAATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACAGCAGATACAAAAGTCAGTAAACAGATAAGATGAGAAAAAATG  200

seq1  GAAATAAATGACTTCTTATTTTTAAATTTAATTTTATATAATATTCCTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATGACTTCTTATTTTTAAATTTAATTTTATATAATATTCCTTC  250

seq1  TACATTATAATTTGTTCATATTCTATCTGTTCCCCAAACTCCTCCCAGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATAATTTGTTCATATTCTATCTGTTCCCCAAACTCCTCCCAGAT  300

seq1  TTTTTCAACCTTCTTACCCACCTAACTCCATATTATTTCTCTCTAAAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAACCTTCTTACCCACCTAACTCCATATTATTTCTCTCTAAAAAA  350

seq1  TAAACAAAACTCAGAAAATTAAAGTCAAAACAAATTCAAAACATTAAGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAACTCAGAAAATTAAAGTCAAAACAAATTCAAAACATTAAGGC  400

seq1  AAATAAAAATTACTCAATATTAAATCATAAAAGTGTCAAAAGGCATGTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATTACTCAATATTAAATCATAAAAGTGTCAAAAGGCATGTTA  450

seq1  AGAATGTATTAAAAATTATAGGTTTTACTTAGAAATATAAGTAGCAAACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTATTAAAAATTATAGGTTTTACTTAGAAATATAAGTAGCAAACA  500

seq1  AACGTGTTAAGTGATTTAAAAAGTAAGAAATGGCTACCTTAGTTCCTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGTTAAGTGATTTAAAAAGTAAGAAATGGCTACCTTAGTTCCTGAA  550

seq1  TGGGCTCTCCGATGATGGAGCATAATTGTTGCCATGTCTATGCTCTTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTCCGATGATGGAGCATAATTGTTGCCATGTCTATGCTCTTTTG  600

seq1  GGGTAAACTTTGAGTTATAGTGTTCTATGTATTACACATTGAAAGAAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAACTTTGAGTTATAGTGTTCTATGTATTACACATTGAAAGAAAAG  650

seq1  TCTGAAATTCAAGTGATCAGGAGCACACACAGGATGTTAAACAAATCTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATTCAAGTGATCAGGAGCACACACAGGATGTTAAACAAATCTCC  700

seq1  AAATCTCATTTATTAGCTGTGAAGGTTTCAGTAGCTAGACAAACTAGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCATTTATTAGCTGTGAAGGTTTCAGTAGCTAGACAAACTAGTGT  750

seq1  AGAGAATTC  758
      |||||||||
seq2  AGAGAATTC  759

seq1: chr15_5802081_5803122
seq2: B6Ng01-109E20.g_68_1093

seq1  GAATTCTTAGCCTTTTCTAAAATTAGGGAATCTCTAGAAAATATTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCCTTTTCTAAAATTAGGGAATCTCTAGAAAATATTTTCAA  50

seq1  AATAGTTTTCTGGAGAATTAATTTCTGGAGAATTAATACAATCGTTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTTCTGGAGAATTAATTTCTGGAGAATTAATACAATCGTTTACT  100

seq1  TAGAATAATTGTGGCCTAAATTCAAAAACAAAAAACAAAAACAAAACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAATTGTGGCCTAAATTCAAAAACAAAAAACAAAAACAAAACAAC  150

seq1  AAACAAAAAAAAACAAAAAGCAAATCACTTTTGTGGAAGGTTCTTTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAAAACAAAAAGCAAATCACTTTTGTGGAAGGTTCTTTGAAA  200

seq1  CTATCAGGCTCTCTTTACTATGATGGTAAGAGTATTGATCATTACAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGGCTCTCTTTACTATGATGGTAAGAGTATTGATCATTACAATAA  250

seq1  TTTATGATCTTCTCCCATCATCATAATAATGGTAGAGGTATCTTCAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATCTTCTCCCATCATCATAATAATGGTAGAGGTATCTTCAAAAA  300

seq1  TGGGGACTGGAACAACTAAAATTTACCAGAGATAGTGCATATCTAGACGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTGGAACAACTAAAATTTACCAGAGATAGTGCATATCTAGACGA  350

seq1  ACAGGAGTAAACATGGAAGCAGGAAAGCTGAGAATCTACAAATTGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTAAACATGGAAGCAGGAAAGCTGAGAATCTACAAATTGTATTT  400

seq1  CTATTTTAGCTTAAATAAGACAGACCTCTACTTTGTGTATTTACAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAGCTTAAATAAGACAGACCTCTACTTTGTGTATTTACAAGAAA  450

seq1  ACACCTCAAGAATAAACCTTGTCATTAATCATCCATATCCTATGTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCAAGAATAAACCTTGTCATTAATCATCCATATCCTATGTCCTTC  500

seq1  CTCTCTATGATCTGGCCCTCTCTGAAAACAAAAGGGTTGGCAGACATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTATGATCTGGCCCTCTCTGAAAACAAAAGGGTTGGCAGACATCTT  550

seq1  AGCTCTGCTGGGAGTCCTCGAGAGCATTTGAAACTGCAGCCAGGCACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCTGGGAGTCCTCGAGAGCATTTGAAACTGCAGCCAGGCACCAA  600

seq1  CCAGCACAAGTGCTTGCCCGCTCAGAAAGCCTGATTGGAAACGTGTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACAAGTGCTTGCCCGCTCAGAAAGCCTGATTGGAAACGTGTGACT  650

seq1  TACATACCTCATATGACTTTCAGATAACATAGCATTGACCCAGAGCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACCTCATATGACTTTCAGATAACATAGCATTGACCCAGAGCTAAG  700

seq1  AGAATAGGATTTGCCCTGAATGGGAATGACAAGTAGGATAGATAAGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGGATTTGCCCTGAATGGGAATGACAAGTAGGATAGATAAGGAAG  750

seq1  AACATGGAAGTGCTGGAGGAATTTTGCCTATGAGTAAGAAGAGTGGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGAAGTGCTGGAGGAATTTTGCCTATGAGTAAGAAGAGTGGCAGC  800

seq1  TTTACTGTGGATGTTTGCCCCAACCCATAATCTACTCAGTGAATGGCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTGGATGTTTGCCCCAACCCATAATCTACTCAGTGAATGGCTGG  850

seq1  GGTCTTCTGAGGCTTCAGAACAGCAGCAGCAGTGAGGCTGGAAGCCCGCA  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGTCTTCTGAGGCTTCAG-ACAGCAGCAGCAGTGAGGCTGGAAGCCCGCA  899

seq1  TGCAGACTGCGTTCTCATGTCACAACCCACTGTGAAGCAGCTTAGCAAGA  950
      |||||||||||| |||||| ||| |||||||||||||||||||||| |||
seq2  TGCAGACTGCGTCCTCATG-CAC-ACCCACTGTGAAGCAGCTTAGC-AGA  946

seq1  TGTTTTCCTGA-GATTTCACAGTCTACATTAACGTTTTTTTTTTGTTTTT  999
      || |||||||| |||||| ||||||||| ||||||||||||||       
seq2  TG-TTTCCTGAGGATTTCCCAGTCTACA-TAACGTTTTTTTTT-------  987

seq1  GTTTTGTTTGTTTGTTTGTTTGTTTGTTTCAAAACAGGGTTTC  1042
        |||||||| | |||||  || ||||     |||||||||||
seq2  -GTTTGTTTG-TGGTTTG--TGGTTGTGGGTCAACAGGGTTTC  1026