BAC Information

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BAC

Clone NameB6Ng01-110P12
Chromosome15 (Build37)
Map Location 77,463,261 - 77,590,812
singlet/doubletdoublet
Overlap geneA330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2
Upstream geneNfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661
Downstream geneMyh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110P12.bB6Ng01-110P12.g
ACCDH917439DH917440
length1,189250
definitionDH917439|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P12, 5' end.DH917440|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,463,261 - 77,464,483)(77,590,567 - 77,590,812)
sequence
gaattccactacctggcgttggtgttcagcctctgcttcctaaagcacta
cccagttgcttcccattgcattaagtcactttctcattggccgcaattgt
ctctggaccaaacggcttttcagcatcccacctctaacgtggtacttccc
agagtgacatttcttgccatatcactggccaatggagtcattcttagaag
atcttcaggatgtccaggtggggtgggctctgtttgtgtccctggaggtt
gagatccttagttctctctttcaggtgactctgaagcaaggtcctgcatc
cctgccctgctttatttcaggagtgtattaatgttccaatcccatctatg
ctttgtgctgagggcccccttcaagtttgcctctcagctttggtggatat
tttaatggtctgtctcttcctgtggattttctcgctatcagccacaggcc
caccgtgacaggaccatgtaaatgtctgctgagccacaggcccaccatga
tggattcctttgatcagagtgagcaatgggctggaacactaatagaccca
tgaacagtcaggatggcagggactaggacacccccatgtctctatctcta
aatctagggacagaagccgagcccatcccacttgtacattaagaagatct
gctagaaaactgctcagcatgttctctgacaacacaggaaagtcaggcaa
atggttgccacctcagtgctcaggactctgccaataccagaggtccagag
gctgtgaagtgattgcttttactccatttttcaagaccagtcagttgaca
tttactgaacacaagctagagaacataagaacacaagaggccattggtct
cagacaccaccttggccagcaagtctccacagactgagaaataccttaga
gccatatgcccaatctcctgtcacaaacgggttgaattcatctccattcc
atacagtgtttgacacctatgtatctgcttgactctcactctggctctct
cccatttctgctcgcaagctctgacttctcatgcttgtctgtacagcctc
ctggcacacccacaatgtacactcccattccccacactctaggacactct
gatccacacttaatatatttaatctcctagcatattactgcctaagccaa
tctgaatggcgctacatgatcaagtatggcacattaaac
tcctctccttccacatgctgggctcgcctttctcctctaggaggaaggag
gctctggaggagatgctgcggttccagaggcagaaagtgggaggagtggg
tggtgagcagaagctggggaggcgcgcagtgtgcaccgcaaacactcagc
atcagcggtggcagatgaagcatgtgcacacgtgcacgcacgcgcgcgcg
cgcgctctccccccccccccccatacactcaaaagaggatccgtaatgtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_77463261_77464483
seq2: B6Ng01-110P12.b_48_1236

seq1  GAATTCCACTACCTGGCGTTGGTGTTCAGCCTCTGCTTCCTAAAGCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTACCTGGCGTTGGTGTTCAGCCTCTGCTTCCTAAAGCACTA  50

seq1  CCCAGTTGCTTCCCATTGCATTAAGTCACTTTCTCATTGGCCGCAATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGCTTCCCATTGCATTAAGTCACTTTCTCATTGGCCGCAATTGT  100

seq1  CTCTGGACCAAACGGCTTTTCAGCATCCCACCTCTAACGTGGTACTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACCAAACGGCTTTTCAGCATCCCACCTCTAACGTGGTACTTCCC  150

seq1  AGAGTGACATTTCTTGCCATATCACTGGCCAATGGAGTCATTCTTAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGACATTTCTTGCCATATCACTGGCCAATGGAGTCATTCTTAGAAG  200

seq1  ATCTTCAGGATGTCCAGGTGGGGTGGGCTCTGTTTGTGTCCCTGGAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGGATGTCCAGGTGGGGTGGGCTCTGTTTGTGTCCCTGGAGGTT  250

seq1  GAGATCCTTAGTTCTCTCTTTCAGGTGACTCTGAAGCAAGGTCCTGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTTAGTTCTCTCTTTCAGGTGACTCTGAAGCAAGGTCCTGCATC  300

seq1  CCTGCCCTGCTTTATTTCAGGAGTGTATTAATGTTCCAATCCCATCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTGCTTTATTTCAGGAGTGTATTAATGTTCCAATCCCATCTATG  350

seq1  CTTTGTGCTGAGGGCCCCCTTCAAGTTTGCCTCTCAGCTTTGGTGGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCTGAGGGCCCCCTTCAAGTTTGCCTCTCAGCTTTGGTGGATAT  400

seq1  TTTAATGGTCTGTCTCTTCCTGTGGATTTTCTCGCTATCAGCCACAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGTCTGTCTCTTCCTGTGGATTTTCTCGCTATCAGCCACAGGCC  450

seq1  CACCGTGACAGGACCATGTAAATGTCTGCTGAGCCACAGGCCCACCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGACAGGACCATGTAAATGTCTGCTGAGCCACAGGCCCACCATGA  500

seq1  TGGATTCCTTTGATCAGAGTGAGCAATGGGCTGGAACACTAATAGACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCCTTTGATCAGAGTGAGCAATGGGCTGGAACACTAATAGACCCA  550

seq1  TGAACAGTCAGGATGGCAGGGACTAGGACACCCCCATGTCTCTATCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTCAGGATGGCAGGGACTAGGACACCCCCATGTCTCTATCTCTA  600

seq1  AATCTAGGGACAGAAGCCGAGCCCATCCCACTTGTACATTAAGAAGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGGACAGAAGCCGAGCCCATCCCACTTGTACATTAAGAAGATCT  650

seq1  GCTAGAAAACTGCTCAGCATGTTCTCTGACAACACAGGAAAGTCAGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAACTGCTCAGCATGTTCTCTGACAACACAGGAAAGTCAGGCAA  700

seq1  ATGGTTGCCACCTCAGTGCTCAGGACTCTGCCAATACCAGAGGTCCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGCCACCTCAGTGCTCAGGACTCTGCCAATACCAGAGGTCCAGAG  750

seq1  GCTGTGAAGTGATTGCTTTTACTCCATTTTTCAAGACCAGTCAGTTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAAGTGATTGCTTTTACTCCATTTTTCAAGACCAGTCAGTTGACA  800

seq1  TTTACTGAACACAAGCTAGAGAACATAAGAACACAAGAGGCCATTGGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAACACAAGCTAGAGAACATAAGAACACAAGAGGCCATTGGTCT  850

seq1  CAGACACCACCTTGGCCAGCAAGTCTCCACAGACTGAGAAATACCTTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCACCTTGGCCAGCAAGTCTCCACAGACTGAGAAATACCTTAGA  900

seq1  GCCATATGCCCAATCTCCTGTCACAAACGGGTTGAATTCATCTCCATTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATGCCCAATCTCCTGTCACAAACGGGTTGAATTCATCTCCATTCC  950

seq1  ATACAGTGTTTGACACCTTATGTAATCTGCCTTGACTCTCACTCTGGCTC  1000
      ||||||||||||||||| ||||| ||||| ||||||||||||||||||||
seq2  ATACAGTGTTTGACACC-TATGT-ATCTG-CTTGACTCTCACTCTGGCTC  997

seq1  TCTCCCATTTTCTGCTCCGCAAGCTTCTTGACTTCTCATTGCTTGTCCTG  1050
      ||||||| |||||||| ||||||||   |||||||||| ||||||| |||
seq2  TCTCCCA-TTTCTGCT-CGCAAGCT--CTGACTTCTCA-TGCTTGT-CTG  1041

seq1  TACAGCCCTCCCTGGCCACACCCACCATGTTACACTCCCATTCCCCACAC  1100
      |||||||   ||||| ||||||||| ||| ||||||||||||||||||||
seq2  TACAGCC--TCCTGG-CACACCCACAATG-TACACTCCCATTCCCCACAC  1087

seq1  TCTAGGACACTCTGATCCACACTTTTTATTTATTTATTTTTAATTCTCAT  1150
      ||||||||||||||||||||||      || || |||||   | |||| |
seq2  TCTAGGACACTCTGATCCACAC------TTAATATATTT---AATCTCCT  1128

seq1  AGGCATATTACTAGCTAAAAGCCAATCTGAAAGGCAGCTTACTATATGAT  1200
      | ||||||||||  ||  ||||||||||||| |||      ||| |||| 
seq2  A-GCATATTACTGCCT--AAGCCAATCTGAATGGC-----GCTACATGA-  1169

seq1  TTCAAATGTATGGCACACTAAAC  1223
       ||||  |||||||||| |||||
seq2  -TCAA--GTATGGCACATTAAAC  1189

seq1: chr15_77590567_77590812
seq2: B6Ng01-110P12.g_73_322 (reverse)

seq1  CACATTCTGGATCCTCTTTTGTGTGTATGGGGGGGGGGGGGGAGA----G  46
      ||||||  ||||||||||||| |||||||||||||||||||||||    |
seq2  CACATTACGGATCCTCTTTTGAGTGTATGGGGGGGGGGGGGGAGAGCGCG  50

seq1  CGCGCGCGCGTGCGTGCACGTGTGCACATGCTTCATCTGCCACCGCTGAT  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCGCGCGTGCGTGCACGTGTGCACATGCTTCATCTGCCACCGCTGAT  100

seq1  GCTGAGTGTTTGCGGTGCACACTGCGCGCCTCCCCAGCTTCTGCTCACCA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTGTTTGCGGTGCACACTGCGCGCCTCCCCAGCTTCTGCTCACCA  150

seq1  CCCACTCCTCCCACTTTCTGCCTCTGGAACCGCAGCATCTCCTCCAGAGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCTCCCACTTTCTGCCTCTGGAACCGCAGCATCTCCTCCAGAGC  200

seq1  CTCCTTCCTCCTAGAGGAGAAAGGCGAGCCCAGCATGTGGAAGGAGAGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCTCCTAGAGGAGAAAGGCGAGCCCAGCATGTGGAAGGAGAGGA  250