BAC Information

Click to search

BAC

Clone NameB6Ng01-111C16
Chromosome15 (Build37)
Map Location 75,376,702 - 75,377,641
singlet/doubletsinglet
Overlap genenone
Upstream geneBai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik
Downstream geneLy6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111C16.bB6Ng01-111C16.g
ACCDH917587DH917588
length1,234938
definitionDH917587|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C16, 5' end.DH917588|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcatgggcacactgttggacttctctggctgtgaaatga
gttccgtggtaagaatctgtgtggaataccagaaggatggataagcattc
tgtaaggccatggatggaggttttgtcagaagcattgtgtgcagaaaaga
caaatccataaccagaataagtatctactccggtaagcacaaaactttga
cctttccacggaggaagtggccaaacgtagtcaagctgccactaggttgc
tggctggtcacctctaggaatagtgccatatctgtagctcagggttggtc
tctgctgttggcagaactggcattcagcagcagctgtagccaggtcattc
ttggtaagtagaagtctatgttgttgagcccaagcataacctccatctca
gctaccatagccactttgttcatgtgcccactgagcaatgacagggatat
ctggggaaagaggctgactgttcaaagaatgggtcatcatattcacttga
ttactgaattccttctcagctgaagtcacctttttatgaacatttgcatg
ggccacaaatatcttgacaacctttgcccatttggagagatcgatccaca
gacttttcccccagaagtctttgtcaccaactttccaattttgatctatc
caaatccctgactatccagacaatccattggctacagcccacaggtcaat
gaacaaacatacatctggtcatttcttcttctaaacaaactgtaatacca
tgtgtactgccccgaagttctgtccactttgaagattttccttcacctgt
tcctttcagtttgtctcagaaaggggttgtaatgctgcagctatctactt
ctcagtggccccttcatacatgcagagccttcagtaaaacagtcctagtc
ttcctttctttaggtcagccaatcatggggacatcccatgagctatagtt
gaatgctggcagcagatggcattgtacagagtacaaaccataggcattga
gcacctcctcctgtacctgctgtaccttcagatctgcctcggtcctatca
cctatataatacctccatttgatatagacctgctgcgggcatgtcctgcc
ttgtgactggaagctgaatacacctagctccatggatcgggtccagtata
ggttaaccttgggtcctattgcagtaccattttcctaggccatagcgccc
agaagctgctttccaaggagagatcgtgtgcctc
gaattcaattcccagcacccacatcaggcagcttctagccacctgtaacc
ccaagttcagagactctgatggcctcttctggtctctgagggcacctgga
cacacgtggtatatatggagataaaagcaggcacacatgtacacattaat
aaaaagaaatgatttttgaaaaaagattggataagctttattgtgtgaat
ttgtttgtgtatatgtggggtaagggaagggcattcagagatcagaagac
aagtaagggagccagttctcttcattcatcgtgtgcatcccagggataga
acccaggttgtcaggcttggcagaggtgcctttagctacactgaactatt
ttgctggtttgagtggttaattttaattgtttctatcattgggagaaaat
gagctacttgtgtagatacataataagcagatgctatctcatattgtaaa
agccactctacttgttttgcaccatttgtatgcacgtggtggtattatat
accatttgtatatatgtggtggtattaactctggactaaactaaaatgtg
acggagaaagaaagcggcccttggatggcaataaagtaacctttatcaca
gcatggtcctgtgaatgaccacggtcacctgtgagatgcagaaacctgga
cccagctctgctcagctccagtccttctttccatgacgcaccctgacaca
gaggggctattttctcttttattgcccataattatgtaagaggtcctgac
ttgataaaccatacccagtaaagccagcattgcttaccgtctgcaagcct
tgtcatgataagactctctggtctttgcccaccaatggtgcaccagtagg
agcttcagctggcaggaagccaggacttctcactcattttaggctctctt
tgagagtacaacaggagaggagggagaacagtcagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_75376702_75377641
seq2: B6Ng01-111C16.g_69_1006 (reverse)

seq1  TAGCTGACTGTTCTCCCTCCTCTCCTGTTGATACTCTCAAAGAGAGGCTT  50
      |||||||||||||||||||||||||||||| |||||||||||||| || |
seq2  TAGCTGACTGTTCTCCCTCCTCTCCTGTTG-TACTCTCAAAGAGA-GCCT  48

seq1  AAAATGAGTGAGAAGTCCTGGCATCCTGCCAGCTGAAGCTCCTGCTGGTG  100
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  AAAATGAGTGAGAAGTCCTGGCTTCCTGCCAGCTGAAGCTCCTACTGGTG  98

seq1  CA-CACTGGTGGGCAGAGACCAGAGAGTCCTTATCCTGAC-AGGCTTGGC  148
      || || ||||||||| |||||||||||| |||||| |||| |||||| ||
seq2  CACCATTGGTGGGCAAAGACCAGAGAGT-CTTATCATGACAAGGCTT-GC  146

seq1  AGACCGTAAGCAATGCTGGCTTTACTGGGTATGGCTTATCATGTCAGGAC  198
      |||| ||||||||||||||||||||||||||||| |||||| ||||||||
seq2  AGACGGTAAGCAATGCTGGCTTTACTGGGTATGGTTTATCAAGTCAGGAC  196

seq1  CTCCTACATAATTATGGGCAATTAAAGAGAAAATAGCCCCTCTGTGTCAG  248
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCTTACATAATTATGGGCAATAAAAGAGAAAATAGCCCCTCTGTGTCAG  246

seq1  GGTGCGTCATGGAAAGAAGGACTGGAGCTGAGCAGAGCTGGGTCCAGGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGTCATGGAAAGAAGGACTGGAGCTGAGCAGAGCTGGGTCCAGGTT  296

seq1  TCTGCATCTCACAGGTGACCGTGGTCATTCACAGGACCATGCTGTGATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCTCACAGGTGACCGTGGTCATTCACAGGACCATGCTGTGATAA  346

seq1  AGGTTACTTTATTGCCATCCAAGGGCCGCTTTCTTTCTCCGTCACATTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTTTATTGCCATCCAAGGGCCGCTTTCTTTCTCCGTCACATTTT  396

seq1  AGTTTAGTCCAGAGTTAATACCACCACATATATACAAATGGTATATAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGTCCAGAGTTAATACCACCACATATATACAAATGGTATATAATA  446

seq1  CCACCACGTGCATACAAATGGTGCAAAACAAGTAGAGTGGCTTTTACAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACGTGCATACAAATGGTGCAAAACAAGTAGAGTGGCTTTTACAAT  496

seq1  ATGAGATAGCATCTGCTTATTATGTATCTACACAAGTAGCTCATTTTCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATAGCATCTGCTTATTATGTATCTACACAAGTAGCTCATTTTCTC  546

seq1  CCAATGATAGAAACAATTAAAATTAACCACTCAAACCAGCAAAATAGTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGATAGAAACAATTAAAATTAACCACTCAAACCAGCAAAATAGTTC  596

seq1  AGTGTAGCTAAAGGCACCTCTGCCAAGCCTGACAACCTGGGTTCTATCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGCTAAAGGCACCTCTGCCAAGCCTGACAACCTGGGTTCTATCCC  646

seq1  TGGGATGCACACGATGAATGAAGAGAACTGGCTCCCTTACTTGTCTTCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGCACACGATGAATGAAGAGAACTGGCTCCCTTACTTGTCTTCTG  696

seq1  ATCTCTGAATGCCCTTCCCTTACCCCACATATACACAAACAAATTCACAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAATGCCCTTCCCTTACCCCACATATACACAAACAAATTCACAC  746

seq1  AATAAAGCTTATCCAATCTTTTTTCAAAAATCATTTCTTTTTATTAATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCTTATCCAATCTTTTTTCAAAAATCATTTCTTTTTATTAATGT  796

seq1  GTACATGTGTGCCTGCTTTTATCTCCATATATACCACGTGTGTCCAGGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGTGTGCCTGCTTTTATCTCCATATATACCACGTGTGTCCAGGTG  846

seq1  CCCTCAGAGACCAGAAGAGGCCATCAGAGTCTCTGAACTTGGGGTTACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGAGACCAGAAGAGGCCATCAGAGTCTCTGAACTTGGGGTTACAG  896

seq1  GTGGCTAGAAGCTGCCTGATGTGGGTGCTGGGAATTGAATTC  940
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAGAAGCTGCCTGATGTGGGTGCTGGGAATTGAATTC  938