BAC Information

Click to search

BAC

Clone NameB6Ng01-111I15
Chromosome15 (Build37)
Map Location 22,093,917 - 22,196,191
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111I15.bB6Ng01-111I15.g
ACCDH917856DH917857
length1,1441,101
definitionDH917856|Mus musculus domesticus DNA, BAC clone: B6Ng01-111I15, 5' end.DH917857|Mus musculus domesticus DNA, BAC clone: B6Ng01-111I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,195,047 - 22,196,191)(22,093,917 - 22,095,032)
sequence
gaattcaacatacatattaatcttggaaataactgaagtcaattcacaaa
tattgaactttaatcacagtctgacaccaaatggctctagcagacttgta
cagacattctttgaaaactgaagagaagcatatttttcaacatatttttg
aatagctttcaaggcaaactatacatcaagccaaatctcaaaaaaattct
aaaactgaacctctaacctatacattttcttatggtttgggaataaattt
aaaatcatcaagaagagtagctgaagcaataatgtttgtgttcagtacag
tctcttgatcaagaggtagatcattaaagattctaagaatgttttaaata
aatatagacagaaattaaaataaactatccctaaaatgataaaatattaa
aaatttgacaataggaggagaacttacaaataattgtttctttttagttt
ctacatcatgtatacaaacgattgatgtttggtgtctatatacattcaag
gatccatagacaagaaaatatttgtttaaaaatcttattttggtgatttg
aatgaaaatgcttctcatatgcacatgtgttttaatacttggtcccattt
tggggtctctgtttgagatagtgttgcaaccttaatgacgcaagtatatt
acgtaactgagattatatagcatcccctttctttctgtttacattcttta
tttcataattgaggtaaaagttgagatctttcagctggaattcctagagc
ttcttgtcttaatgcccactatgatgaactcccatgcctccataattcaa
agtcaccaaactttcttcgaaaatcaaattttctcaccaagtttcctttt
tccattgcagtacagaaaacaaataaatacactgaatggggcttaattga
cgtaaagggattatcttgaatgtggtgtaatactttctaaatgatataag
ctgttctgtatgcgagtaatgggctaagacatctcaaaattcatttgctc
aggattaattcccaaattaaaattagattgtttaacaaataatcatgttt
acctctgttaacaaggtctgcttatgtggaacaagctaattccgtgtgag
cgtgctattttatttccaggctgggtgtgtggactcagtacatt
gaattccaattgatccattcttatctccctgtactaagctcaagtctaag
tggatcaaagaactccacataaaaccagatacactaaaacttatagagga
gaaagtggggaaaagcctcaaagatatgggcacaggggaaaaattcctga
acagcaatcaacaaatgggacctcataaaattgtaaagcttctgtaagac
aaaagacactgtcaataagacaaaaaggctaccgacagattgggaaagga
tctttacaaatcctaaatcagataggggactaatatccaatatatacaaa
gaactcaagaagctggactccagaaaatcaaataaccccatttaaaaagc
ctcaatatttataatagttaaatgtcttaacactggggggaaattgtctt
atcctacagactgccatatggtcaatcatggaaactggaacttcttaaga
atggacttgagctacaaatatatgtctgtgtctgactccttgcatggcag
aaaatgcccctgaatgcttacatatcactttgtctacatatagattgtct
gagatatgaagaactaaggcaccaggatattttcacccacacgtgtacta
tcaacaagtctgtaacctcagaaaactttggcttcattataatgtttatt
acattgtgatcgtcagagtagcataggaagaaatatgcttttacttagaa
aaaaaaagcactgtaggcaatggatactccactctccataacataaatat
tcataaagaatgattcttacaatacaaagcatacaatcccctgtgcttta
gacgctcctgtgctttgggggagccacctgtgggacagccattttaatct
cttcttcacagtttttgcgtattcttggctcaatgaacttttaattaaat
tatttgtgtcttcctactgaattaattcctggaagaaaaaaataccttgg
agactactttacaacagaatcagtaagatttaattttctactcacaaaaa
aaactagaacttttatacattatgctcttggttcatacgactatcacatg
catttgtgttgcatgtgaggtttatctatctgttcgtggagcatattata
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22195047_22196191
seq2: B6Ng01-111I15.b_43_1186 (reverse)

seq1  AATGTACTTGAGT--TCACAACCAG-CTGGAAAT-AAATAGCA-GCTACC  45
      ||||||| |||||   |||| |||| |||||||| |||||||| |||  |
seq2  AATGTAC-TGAGTCCACACACCCAGCCTGGAAATAAAATAGCACGCTCAC  49

seq1  A--GAA-TAGCTTGTTCTACATAAGCAGACCTTGTT-ACAGA-GTAAACA  90
      |  ||| |||||||||| |||||||||||||||||| ||||| |||||||
seq2  ACGGAATTAGCTTGTTCCACATAAGCAGACCTTGTTAACAGAGGTAAACA  99

seq1  TGATTTATTTGTTATACAATCTAATTTTTAAATTTTGGGAATTAATTCTT  140
      ||| |||||||||| |||||||||||||   | |||||||||||| || |
seq2  TGA-TTATTTGTTAAACAATCTAATTTT---AATTTGGGAATTAA-TCCT  144

seq1  GAGCAAATGAATTTTTTGAGAATGTCTTAGCCCATTACTCGCATACAGAA  190
      |||||||||||  ||||||| |||||||||||||||||||||||||||||
seq2  GAGCAAATGAA--TTTTGAG-ATGTCTTAGCCCATTACTCGCATACAGAA  191

seq1  CAGCTTATATCATTTTAGAAAGTA-TACA-CACAATCAAGATAATCCCTT  238
      |||||||||||| ||||||||||| |||| |||| |||||||||||||||
seq2  CAGCTTATATCA-TTTAGAAAGTATTACACCACATTCAAGATAATCCCTT  240

seq1  TACGTCAATTAAGCCACATTCAGTGTATTTATTTGTTTTCTGTTACTGCA  288
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  TACGTCAATTAAGCCCCATTCAGTGTATTTATTTGTTTTCTG-TACTGCA  289

seq1  ATGGAAAAAGGAAACTTGGTGAGAAAATTTGATTTTTCGAAGAAAGTTTG  338
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGGAAAAAGGAAACTTGGTGAGAAAATTTGA-TTTTCGAAGAAAGTTTG  338

seq1  GTGACTTTGAATTATGGAGGCATGGGAGTTCATCATAGTGGGCATTTAAG  388
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGACTTTGAATTATGGAGGCATGGGAGTTCATCATAGTGGGCA-TTAAG  387

seq1  ACAAGAAGCTCTAGGAATTCCAGCTGAAAGATCTCAACTTTTACCTCAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGCTCTAGGAATTCCAGCTGAAAGATCTCAACTTTTACCTCAAT  437

seq1  TATGAAATAAAGAATGTAAACAGAAAGAAAGGGGATGCTATATAATCTCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATAAAGAATGTAAACAGAAAGAAAGGGGATGCTATATAATCTCA  487

seq1  GTTACGTAATATACTTGCGTCATTAAGGTTGCAACACTATCTCAAACAGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGTAATATACTTGCGTCATTAAGGTTGCAACACTATCTCAAACAGA  537

seq1  GACCCCAAAATGGGACCAAGTATTAAAACACATGTGCATATGAGAAGCAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAAAATGGGACCAAGTATTAAAACACATGTGCATATGAGAAGCAT  587

seq1  TTTCATTCAAATCACCAAAATAAGATTTTTAAACAAATATTTTCTTGTCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCAAATCACCAAAATAAGATTTTTAAACAAATATTTTCTTGTCT  637

seq1  ATGGATCCTTGAATGTATATAGACACCAAACATCAATCGTTTGTATACAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCCTTGAATGTATATAGACACCAAACATCAATCGTTTGTATACAT  687

seq1  GATGTAGAAACTAAAAAGAAACAATTATTTGTAAGTTCTCCTCCTATTGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGAAACTAAAAAGAAACAATTATTTGTAAGTTCTCCTCCTATTGT  737

seq1  CAAATTTTTAATATTTTATCATTTTAGGGATAGTTTATTTTAATTTCTGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTTAATATTTTATCATTTTAGGGATAGTTTATTTTAATTTCTGT  787

seq1  CTATATTTATTTAAAACATTCTTAGAATCTTTAATGATCTACCTCTTGAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTATTTAAAACATTCTTAGAATCTTTAATGATCTACCTCTTGAT  837

seq1  CAAGAGACTGTACTGAACACAAACATTATTGCTTCAGCTACTCTTCTTGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACTGTACTGAACACAAACATTATTGCTTCAGCTACTCTTCTTGA  887

seq1  TGATTTTAAATTTATTCCCAAACCATAAGAAAATGTATAGGTTAGAGGTT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAAATTTATTCCCAAACCATAAGAAAATGTATAGGTTAGAGGTT  937

seq1  CAGTTTTAGAATTTTTTTGAGATTTGGCTTGATGTATAGTTTGCCTTGAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTAGAATTTTTTTGAGATTTGGCTTGATGTATAGTTTGCCTTGAA  987

seq1  AGCTATTCAAAAATATGTTGAAAAATATGCTTCTCTTCAGTTTTCAAAGA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTCAAAAATATGTTGAAAAATATGCTTCTCTTCAGTTTTCAAAGA  1037

seq1  ATGTCTGTACAAGTCTGCTAGAGCCATTTGGTGTCAGACTGTGATTAAAG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTACAAGTCTGCTAGAGCCATTTGGTGTCAGACTGTGATTAAAG  1087

seq1  TTCAATATTTGTGAATTGACTTCAGTTATTTCCAAGATTAATATGTATGT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATTTGTGAATTGACTTCAGTTATTTCCAAGATTAATATGTATGT  1137

seq1  TGAATTC  1145
      |||||||
seq2  TGAATTC  1144

seq1: chr15_22093917_22095032
seq2: B6Ng01-111I15.g_67_1167

seq1  GAATTCCAATTGATCCATTCTTATCTCCCTGTACTAAGCTCAAGTCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTGATCCATTCTTATCTCCCTGTACTAAGCTCAAGTCTAAG  50

seq1  TGGATCAAAGAACTCCACATAAAACCAGATACACTAAAACTTATAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAAAGAACTCCACATAAAACCAGATACACTAAAACTTATAGAGGA  100

seq1  GAAAGTGGGGAAAAGCCTCAAAGATATGGGCACAGGGGAAAAATTCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGGGAAAAGCCTCAAAGATATGGGCACAGGGGAAAAATTCCTGA  150

seq1  ACAGCAATCAACAAATGGGACCTCATAAAATTGTAAAGCTTCTGTAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATCAACAAATGGGACCTCATAAAATTGTAAAGCTTCTGTAAGAC  200

seq1  AAAAGACACTGTCAATAAGACAAAAAGGCTACCGACAGATTGGGAAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACACTGTCAATAAGACAAAAAGGCTACCGACAGATTGGGAAAGGA  250

seq1  TCTTTACAAATCCTAAATCAGATAGGGGACTAATATCCAATATATACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACAAATCCTAAATCAGATAGGGGACTAATATCCAATATATACAAA  300

seq1  GAACTCAAGAAGCTGGACTCCAGAAAATCAAATAACCCCATTTAAAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAGAAGCTGGACTCCAGAAAATCAAATAACCCCATTTAAAAAGC  350

seq1  CTCAATATTTATAATAGTTAAATGTCTTAACACTGGGGGGAAATTGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATATTTATAATAGTTAAATGTCTTAACACTGGGGGGAAATTGTCTT  400

seq1  ATCCTACAGACTGCCATATGGTCAATCATGGAAACTGGAACTTCTTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACAGACTGCCATATGGTCAATCATGGAAACTGGAACTTCTTAAGA  450

seq1  ATGGACTTGAGCTACAAATATATGTCTGTGTCTGACTCCTTGCATGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTGAGCTACAAATATATGTCTGTGTCTGACTCCTTGCATGGCAG  500

seq1  AAAATGCCCCTGAATGCTTACATATCACTTTGTCTACATATAGATTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCCCCTGAATGCTTACATATCACTTTGTCTACATATAGATTGTCT  550

seq1  GAGATATGAAGAACTAAGGCACCAGGATATTTTCACCCACACGTGTACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATGAAGAACTAAGGCACCAGGATATTTTCACCCACACGTGTACTA  600

seq1  TCAACAAGTCTGTAACCTCAGAAAACTTTGGCTTCATTATAATG-TTATT  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCAACAAGTCTGTAACCTCAGAAAACTTTGGCTTCATTATAATGTTTATT  650

seq1  ACATTGTGATCGTCAGAGTAGCATAGGAAGAAATATGCTTTTACTTAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGATCGTCAGAGTAGCATAGGAAGAAATATGCTTTTACTTAGAA  700

seq1  AAAAAAAGCACTGTAGGCAATGGATACTCCACTCTCCATAACATAAATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCACTGTAGGCAATGGATACTCCACTCTCCATAACATAAATAT  750

seq1  TCATAAAGAATGATTCTTACAATACAAAGCATACAATCCCCTGTGCTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGAATGATTCTTACAATACAAAGCATACAATCCCCTGTGCTTTA  800

seq1  GACGCTCCTGTGCTTT-GGGGAGCCACCTGTGGGACAGCCCATTTTAATC  848
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  GACGCTCCTGTGCTTTGGGGGAGCCACCTGTGGGACAG-CCATTTTAATC  849

seq1  TC-TCTTCACAGTTTTTGCGTATTCTTGGCTCAATGAACTTTTAATTAAA  897
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCACAGTTTTTGCGTATTCTTGGCTCAATGAACTTTTAATTAAA  899

seq1  TTATTTGTGTCTTCCTACTGAATTAATTCCTTGGAAGACACAAATACC-T  946
      |||||||||||||||||||||||||||||| ||||||| | ||||||| |
seq2  TTATTTGTGTCTTCCTACTGAATTAATTCC-TGGAAGAAAAAAATACCTT  948

seq1  GGAGACTACTGTAACAACAGAATCAGTAGAATTTAATTTTCTAACTCACA  996
      |||||||||| | |||||||||||||||  |||||||||||| |||||| 
seq2  GGAGACTACT-TTACAACAGAATCAGTAAGATTTAATTTTCT-ACTCAC-  995

seq1  AATAAAAAAAACTAAGAAACATATTAATACATATATGCTCTGTGGTTCTA  1046
         |||||||||| |||   |  || |||||| |||||||| |||||| |
seq2  ---AAAAAAAACT-AGA---ACTTTTATACAT-TATGCTCT-TGGTTC-A  1035

seq1  TACAGACATACACATGCATTTTGTG-TGCATGTGAGGGTTTATCTATCTG  1095
      ||| |||   |||||||| |||||| ||||||||| ||||||||||||||
seq2  TAC-GACTATCACATGCA-TTTGTGTTGCATGTGA-GGTTTATCTATCTG  1082

seq1  TTCGTGTGAGCATTATTATAC  1116
      |||||| ||||| ||||||||
seq2  TTCGTG-GAGCA-TATTATAC  1101