BAC Information

Click to search

BAC

Clone NameB6Ng01-111N24
Chromosome15 (Build37)
Map Location 29,187,810 - 29,188,945
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111N24.bB6Ng01-111N24.g
ACCDH918096DH918097
length1,126350
definitionDH918096|Mus musculus domesticus DNA, BAC clone: B6Ng01-111N24, 5' end.DH918097|Mus musculus domesticus DNA, BAC clone: B6Ng01-111N24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatttgtattctttataaacatcacatatcctctcacaagactg
ctttgagaaaaacatcatgagacaaaactgagttgttaaaaaaccagaaa
ttcccacttcacaaataagaaatgctgagatgagaaaaatgtctgtggtt
tatccagtaccttaaaaacatacatacaagtaacattacacacactgagc
caggttgtacttacacacacacacacacacacacacacacacacacacac
acacacctgtctgtgtctatgcatgtgtctttacattgcatatgtatgaa
aatatatacatatatattcatcgcatgtgcacatatatctaatataattt
gtaattataggtgttattctcttatttttattaacaaaatttgaaagttc
caaatggacaaccttttcctaattttgtgttagcaaacatattaagtaat
tacagcaaatgtgtctcagcaacactgggacagacaggtttgctgttgct
gatagaggttattcagtgataaaattatgaataggcataataaataaata
tgatgataaatatatgtcaagcatatatgtatgtagtcccattacaacta
aattatttcagcatatatacacagtattcagtgttttcactgttaagtta
tagttgataaaaatgaaagaatacatatgcaagtactcacaacacgggaa
aacctcttgatcctctagggctcattgttttctaaatctgtgctattcca
tgacacagccatctgttttcattgagatatacctacaacttacagtgcat
tttaaaaaataaaatgtttatataacattaaaatgtgataaacttattta
tattacaatttaataaaattcacatgctcataagactttaaagtttattt
tctaattaacatggttgctggcgtgattgacaatttgaaacctaaacaat
tgtattcatttagcatagcctatctatggatcatgaatctaagtaccttt
atgtatgatattggtctttgtatgtatgacatttttggtcatacaggaaa
ttatggtagttaaataatatttatattatttagtcatacatatttaaaac
cattacaatcttattttgaataattg

cacaggaagaccaacagagtcaactagcttggattcttggggctctcaga
gtctgaacaaccaaccagagtacacataggctggacctaggtgtccctgc
aaatatgtagcagaggtgcagcttggtcgtcatgtggatcttggataact
gggacaggggctatcccaaaagctgttgcctgtctgtggactatgttctt
gtacccaagctgccatgtctggtctttatggaagagaaagcacctagcct
cgcaatgacttgaagtgccagggtcctcaagggaatatgggggatcatga
ggggggcatctgctcagagtagaaggggatggggagatggagaaagattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29187810_29188945
seq2: B6Ng01-111N24.b_48_1173

seq1  GAATTCTATTTGTATTCTTTATAAACATCACATATCCTCTCACAAGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTGTATTCTTTATAAACATCACATATCCTCTCACAAGACTG  50

seq1  CTTTGAGAAAAACATCATGAGACAAAACTGAGTTGTTAAAAAACCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGAAAAACATCATGAGACAAAACTGAGTTGTTAAAAAACCAGAAA  100

seq1  TTCCCACTTCACAAATAAGAAATGCTGAGATGAGAAAAATGTCTGTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTTCACAAATAAGAAATGCTGAGATGAGAAAAATGTCTGTGGTT  150

seq1  TATCCAGTACCTTAAAAACATACATACAAGTAACATTACACACACTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTACCTTAAAAACATACATACAAGTAACATTACACACACTGAGC  200

seq1  CAGGTTGTACTTACACACACACACACACACACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGTACTTACACACACACACACACACACACACACACACACACACAC  250

seq1  ACACACCTGTCTGTGTCTATGCATGTGTCTTTACATTGCATATGTATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTGTCTGTGTCTATGCATGTGTCTTTACATTGCATATGTATGAA  300

seq1  AATATATACATATATATTCATCGCATGTGCACATATATCTAATATAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATACATATATATTCATCGCATGTGCACATATATCTAATATAATTT  350

seq1  GTAATTATAGGTGTTATTCTCTTATTTTTATTAACAAAATTTGAAAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATAGGTGTTATTCTCTTATTTTTATTAACAAAATTTGAAAGTTC  400

seq1  CAAATGGACAACCTTTTCCTAATTTTGTGTTAGCAAACATATTAAGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGACAACCTTTTCCTAATTTTGTGTTAGCAAACATATTAAGTAAT  450

seq1  TACAGCAAATGTGTCTCAGCAACACTGGGACAGACAGGTTTGCTGTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAAATGTGTCTCAGCAACACTGGGACAGACAGGTTTGCTGTTGCT  500

seq1  GATAGAGGTTATTCAGTGATAAAATTATGAATAGGCATAATAAATAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGGTTATTCAGTGATAAAATTATGAATAGGCATAATAAATAAATA  550

seq1  TGATGATAAATATATGTCAAGCATATATGTATGTAGTCCCATTACAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATAAATATATGTCAAGCATATATGTATGTAGTCCCATTACAACTA  600

seq1  AATTATTTCAGCATATATACACAGTATTCAGTGTTTTCACTGTTAAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCAGCATATATACACAGTATTCAGTGTTTTCACTGTTAAGTTA  650

seq1  TAGTTGATAAAAATGAAAGAATACATATGCAAGTACTCACAACACGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGATAAAAATGAAAGAATACATATGCAAGTACTCACAACACGGGAA  700

seq1  AACCTCTTGATCCTCTAGGGCTCATTGTTTTCTAAATCTGTGCTATTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTTGATCCTCTAGGGCTCATTGTTTTCTAAATCTGTGCTATTCCA  750

seq1  TGACACAGCCATCTGTTTTCATTGAGATATACCTACAACTTACAGTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGCCATCTGTTTTCATTGAGATATACCTACAACTTACAGTGCAT  800

seq1  TTTAAAAA--TAAATGTTTATATAACATTAAAATGTGATAAACTTATTTA  848
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATAAAATGTTTATATAACATTAAAATGTGATAAACTTATTTA  850

seq1  TATTACAA-TTAATAAAATTCACATGCTCATAAGACTTTAAAGTTTATTT  897
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAATTTAATAAAATTCACATGCTCATAAGACTTTAAAGTTTATTT  900

seq1  TCTAATTAACATGGTTGCTGGCGTGATTGACAATTTGAAACCTAAACAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTAACATGGTTGCTGGCGTGATTGACAATTTGAAACCTAAACAAT  950

seq1  TGTTATTCATTTAGCATAGCCTATCTATGGATCATGAATCTAAAGTACCC  997
      || |||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  TG-TATTCATTTAGCATAGCCTATCTATGGATCATGAATCT-AAGTACCT  998

seq1  TTATGTATGATAATTTGGTCTTTTGTATGTATGGACAATTTTTGTCATAC  1047
      ||||||||||||  |||||| ||||||||||| |||| |||| |||||||
seq2  TTATGTATGATA--TTGGTC-TTTGTATGTAT-GACATTTTTGGTCATAC  1044

seq1  AGGAATTATTGGTAGTTTTAAAATAATAATTATAATTATTTAGTCAATAC  1097
      ||||| |  ||||||||   |||||||| |||| ||||||||||| ||||
seq2  AGGAAATTATGGTAGTT---AAATAATATTTAT-ATTATTTAGTC-ATAC  1089

seq1  ATATTTAAACACA-TACAATCTATATTTTGATTATAATTG  1136
      |||||||||  || |||||||| ||||||||  |||||||
seq2  ATATTTAAAACCATTACAATCT-TATTTTGA--ATAATTG  1126


| Home | SequenceCutter | Blast | Download |