BAC Information

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BAC

Clone NameB6Ng01-112E24
Chromosome15 (Build37)
Map Location 84,263,097 - 84,450,444
singlet/doubletdoublet
Overlap gene1810041L15Rik, Ldoc1l
Upstream genePacsin2, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988
Downstream geneArhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112E24.bB6Ng01-112E24.g
ACCDH918409DH918410
length1,0301,042
definitionDH918409|Mus musculus domesticus DNA, BAC clone: B6Ng01-112E24, 5' end.DH918410|Mus musculus domesticus DNA, BAC clone: B6Ng01-112E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,263,097 - 84,264,118)(84,449,404 - 84,450,444)
sequence
gaattcacagctcatgggggtggatacctggacagacgctgggagcagaa
atccagttctgcagattgttagaaggaggggaaaaaatagcccttattgg
tgccggatcacatgccttgcccacatccctagaaggaccatataggtaat
tctaatacctgcctgaaggggacactattcctagcagaggactttgttgg
atccagactggcaagagatgggagtggccggccagcaggctggctggtgc
tctggggcaagagaagtgtgctgtggatgctaacgagcatggcttaccag
cttgggaccttgggcacatgaggagcctctgtgttcccatctgtctaatg
ggatggtactcaggtcccacagtttaatatccatgcactgaagatttttc
tcttgcttggcactattgggaggtggaagttagttaagaggtagggccta
gtgaggacatttgtaaaagggctgctgagactccagcccttcttcttact
gtcttttgttccagccagaaggttcccctaccatacattcctaccatgat
gctctgccttactagaggcccaaagcaaaaaggtcactgaccatgggctg
ctggtccaaaatgataagcccaaacaacctttccttgttttaagttgatt
gtctcaggtgttttgttgcagtatggacagcagatccccagacagcagtg
tggctgttgcagataatgagggatgggtcaggaaggcaatatcactgttc
ctagacctgctctagctctaacaggaatgttctaatcagaggctgggcga
cttcctgtagaggggttggtcacctaggtcttctgtcagtgctgtagttc
aagaagttgcccatagacagagctagggaaaggcaaatgctgtgtttcaa
tgtagctttattatacaaaccatcagcccaagtttgcaagtccccaggct
acccctgggcccggcaagccttcctctcctggggagctgggttaaatggc
aggcttctggattggtccactctgcctaac
gaattccacctgtctccacagttcaatacaacgcgagtgtgcatggctgc
ctttctctgggcctaaataaacaactgtgggcaaggtgagcacagaggtc
cctgctgactccagcagtctagggcatgactggaagtttctgagttgtgt
taatgagatgcagccccacccccacccctattcagtcttgccagttgtca
ccaaaatagccagagatggagggccatgaagtttgctttgtctgaaggga
ctgctcatgtaagactctgacaagccttagctacctgggaacctcgcccc
ccccctcccccgtggaccacatggagccggagattgatgcaaaagcaaga
ggaatttattgttccagcactccagtgcactggggccgtcccacagtccc
acattcaaaggagaggtgatgaccccgggcagcctgttcggccagttttt
atacagtttccaggggtggaatagagcaacagcaactaggcacaatatgc
ctggcagaacagtatgacttttaaactgattggtccttagggaatgaggt
agtaagggcttccctcatctgcaggtggctggtggtcagtccccactgtg
gtctttctgaggaatgtgaccagcctctcccttctggagaggagggcacc
tacaaactccatgatctcttcactgaggactgtctttttcctatgagctt
ctgaaatactgcctcagggagcctagtgatggaggactggagtgtcttgc
tctctgaggagcccaggcccgcgttcaggagacagtggccatccactgga
tgctgactggggagtgagccctttgcctttgcatatgccaagcaggtgct
ctccaccaaatcttgccttccaggcccctaggcccaagcctggtctcccg
ggctgtgcaaactatggactgagtacagatctgaaaagacctggtcacac
atctctccttctgtggaccctgtacttccatgttagaaattgtgaaactt
ctgccttgctcctctctggtagacagttgtaaattttaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_84263097_84264118
seq2: B6Ng01-112E24.b_46_1075

seq1  GAATTCACAGCTCATGGGGGTGGATACCTGGACAGACGCTGGGAGCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCTCATGGGGGTGGATACCTGGACAGACGCTGGGAGCAGAA  50

seq1  ATCCAGTTCTGCAGATTGTTAGAAGGAGGGGAAAAAATAGCCCTTATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTTCTGCAGATTGTTAGAAGGAGGGGAAAAAATAGCCCTTATTGG  100

seq1  TGCCGGATCACATGCCTTGCCCACATCCCTAGAAGGACCATATAGGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGATCACATGCCTTGCCCACATCCCTAGAAGGACCATATAGGTAAT  150

seq1  TCTAATACCTGCCTGAAGGGGACACTATTCCTAGCAGAGGACTTTGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACCTGCCTGAAGGGGACACTATTCCTAGCAGAGGACTTTGTTGG  200

seq1  ATCCAGACTGGCAAGAGATGGGAGTGGCCGGCCAGCAGGCTGGCTGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGACTGGCAAGAGATGGGAGTGGCCGGCCAGCAGGCTGGCTGGTGC  250

seq1  TCTGGGGCAAGAGAAGTGTGCTGTGGATGCTAACGAGCATGGCTTACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCAAGAGAAGTGTGCTGTGGATGCTAACGAGCATGGCTTACCAG  300

seq1  CTTGGGACCTTGGGCACATGAGGAGCCTCTGTGTTCCCATCTGTCTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACCTTGGGCACATGAGGAGCCTCTGTGTTCCCATCTGTCTAATG  350

seq1  GGATGGTACTCAGGTCCCACAGTTTAATATCCATGCACTGAAGATTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTACTCAGGTCCCACAGTTTAATATCCATGCACTGAAGATTTTTC  400

seq1  TCTTGCTTGGCACTATTGGGAGGTGGAAGTTAGTTAAGAGGTAGGGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTGGCACTATTGGGAGGTGGAAGTTAGTTAAGAGGTAGGGCCTA  450

seq1  GTGAGGACATTTGTAAAAGGGCTGCTGAGACTCCAGCCCTTCTTCTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGACATTTGTAAAAGGGCTGCTGAGACTCCAGCCCTTCTTCTTACT  500

seq1  GTCTTTTGTTCCAGCCAGAAGGTTCCCCTACCATACATTCCTACCATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGTTCCAGCCAGAAGGTTCCCCTACCATACATTCCTACCATGAT  550

seq1  GCTCTGCCTTACTAGAGGCCCAAAGCAAAAAGGTCACTGACCATGGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTTACTAGAGGCCCAAAGCAAAAAGGTCACTGACCATGGGCTG  600

seq1  CTGGTCCAAAATGATAAGCCCAAACAACCTTTCCTTGTTTTAAGTTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCAAAATGATAAGCCCAAACAACCTTTCCTTGTTTTAAGTTGATT  650

seq1  GTCTCAGGTGTTTTGTTGCAGTATGGACAGCAGATCCCCAGACAGCAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGTGTTTTGTTGCAGTATGGACAGCAGATCCCCAGACAGCAGTG  700

seq1  TGGCTGTTGCAGATAATGAGGGATGGGTCAGGAAGGCAATATCACTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTGCAGATAATGAGGGATGGGTCAGGAAGGCAATATCACTGTTC  750

seq1  CTAGACCTGCTCTAGCTCTAACAGGAATGTTCTAATCAGAGGCTGGGCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCTGCTCTAGCTCTAACAGGAATGTTCTAATCAGAGGCTGGGCGA  800

seq1  CTTCCTGTAGA-GGGTTGGTCACCTAGGTC-TCTGTCAGTGCTGTAG-TC  847
      ||||||||||| |||||||||||||||||| |||||||||||||||| ||
seq2  CTTCCTGTAGAGGGGTTGGTCACCTAGGTCTTCTGTCAGTGCTGTAGTTC  850

seq1  AAGAAG-TGGCCATAGACAGAGCTAGGGAAAGGCAGATGCTGTG-TTCAA  895
      |||||| || ||||||||||||||||||||||||| |||||||| |||||
seq2  AAGAAGTTGCCCATAGACAGAGCTAGGGAAAGGCAAATGCTGTGTTTCAA  900

seq1  TGTAGCTTTATTATCACAAACCATCAGCCCAAGTTTGCAAGTCCCCAGGC  945
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTTATTAT-ACAAACCATCAGCCCAAGTTTGCAAGTCCCCAGGC  949

seq1  TACCCCT-GGCCCGGCAAGCCTTCCTCTCCT-GGGAGCT-GGTTAAAGTG  992
      ||||||| ||||||||||||||||||||||| ||||||| |||||||  |
seq2  TACCCCTGGGCCCGGCAAGCCTTCCTCTCCTGGGGAGCTGGGTTAAATGG  999

seq1  CAGGC-TCTGGATTGGTCCACTCTGCCTACC  1022
      ||||| ||||||||||||||||||||||| |
seq2  CAGGCTTCTGGATTGGTCCACTCTGCCTAAC  1030

seq1: chr15_84449404_84450444
seq2: B6Ng01-112E24.g_68_1109 (reverse)

seq1  AAATT--AAAGTTACAACTGTCTGACCAGAGAGGAGC-AGGCAG-AGTTT  46
       ||||  ||| |||||||||||| ||||||||||||| |||||| |||||
seq2  -AATTTAAAATTTACAACTGTCT-ACCAGAGAGGAGCAAGGCAGAAGTTT  48

seq1  CACCATTTCTAACATGGAAGTACAGGGTCACCAG-AGGAGAGATGTGTGC  95
      ||| |||||||||||||||||||||||||  ||| |||||||||||||| 
seq2  CACAATTTCTAACATGGAAGTACAGGGTCCACAGAAGGAGAGATGTGTGA  98

seq1  CCAGGGTCCTTCTCAGATCTGTACTCAGTCCATAGGTTTGCACAGCCCGG  145
      |||||   ||| |||||||||||||||||||||| |||||||||||||||
seq2  CCAGG--TCTTTTCAGATCTGTACTCAGTCCATA-GTTTGCACAGCCCGG  145

seq1  GAGGCCAGGCTTGGGCCTAGGGGCCTGGAAGGC-AGATTTGGTGGAGAGC  194
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGACCAGGCTTGGGCCTAGGGGCCTGGAAGGCAAGATTTGGTGGAGAGC  195

seq1  ACCTGCTTGGCATATGCAAAGGCAAAGGGCTCACTCCCCAGTCAGCATCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTGGCATATGCAAAGGCAAAGGGCTCACTCCCCAGTCAGCATCC  245

seq1  AGTGGATGGCCACTGTCTCCTGAACGCGGGCCTGGGCTCCTCAGAGAGCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATGGCCACTGTCTCCTGAACGCGGGCCTGGGCTCCTCAGAGAGCA  295

seq1  AGACACTCCAGTCCTCCATCACTAGGCTCCCTGAGGCAGTATTTCAGAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTCCAGTCCTCCATCACTAGGCTCCCTGAGGCAGTATTTCAGAAG  345

seq1  CTCATAGGAAAAAGACAGTCCTCAGTGAAGAGATCATGGAGTTTGTAGGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGGAAAAAGACAGTCCTCAGTGAAGAGATCATGGAGTTTGTAGGT  395

seq1  GCCCTCCTCTCCAGAAGGGAGAGGCTGGTCACATTCCTCAGAAAGACCAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCTCTCCAGAAGGGAGAGGCTGGTCACATTCCTCAGAAAGACCAC  445

seq1  AGTGGGGACTGACCACCAGCCACCTGCAGATGAGGGAAGCCCTTACTACC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGACTGACCACCAGCCACCTGCAGATGAGGGAAGCCCTTACTACC  495

seq1  TCATTCCCTAAGGACCAATCAGTTTAAAAGTCATACTGTTCTGCCAGGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCTAAGGACCAATCAGTTTAAAAGTCATACTGTTCTGCCAGGCA  545

seq1  TATTGTGCCTAGTTGCTGTTGCTCTATTCCACCCCTGGAAACTGTATAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGCCTAGTTGCTGTTGCTCTATTCCACCCCTGGAAACTGTATAAA  595

seq1  AACTGGCCGAACAGGCTGCCCGGGGTCATCACCTCTCCTTTGAATGTGGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCCGAACAGGCTGCCCGGGGTCATCACCTCTCCTTTGAATGTGGG  645

seq1  ACTGTGGGACGGCCCCAGTGCACTGGAGTGCTGGAACAATAAATTCCTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGACGGCCCCAGTGCACTGGAGTGCTGGAACAATAAATTCCTCT  695

seq1  TGCTTTTGCATCAATCTCCGGCTCCATGTGGTCCACGGGGGAGGGGGGGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGCATCAATCTCCGGCTCCATGTGGTCCACGGGGGAGGGGGGGG  745

seq1  GCGAGGTTCCCAGGTAGCTAAGGCTTGTCAGAGTCTTACATGAGCAGTCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGTTCCCAGGTAGCTAAGGCTTGTCAGAGTCTTACATGAGCAGTCC  795

seq1  CTTCAGACAAAGCAAACTTCATGGCCCTCCATCTCTGGCTATTTTGGTGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACAAAGCAAACTTCATGGCCCTCCATCTCTGGCTATTTTGGTGA  845

seq1  CAACTGGCAAGACTGAATAGGGGTGGGGGTGGGGCTGCATCTCATTAACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGCAAGACTGAATAGGGGTGGGGGTGGGGCTGCATCTCATTAACA  895

seq1  CAACTCAGAAACTTCCAGTCATGCCCTAGACTGCTGGAGTCAGCAGGGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGAAACTTCCAGTCATGCCCTAGACTGCTGGAGTCAGCAGGGAC  945

seq1  CTCTGTGCTCACCTTGCCCACAGTTGTTTATTTAGGCCCAGAGAAAGGCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCTCACCTTGCCCACAGTTGTTTATTTAGGCCCAGAGAAAGGCA  995

seq1  GCCATGCACACTCGCGTTGTATTGAACTGTGGAGACAGGTGGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCACACTCGCGTTGTATTGAACTGTGGAGACAGGTGGAATTC  1042