BAC Information

Click to search

BAC

Clone NameB6Ng01-113D09
Chromosome15 (Build37)
Map Location 4,278,307 - 4,393,101
singlet/doubletdoublet
Overlap genePlcxd3
Upstream geneGhr, LOC223278, Fbxo4, AW549877, LOC100039196, Oxct1
Downstream geneC6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113D09.bB6Ng01-113D09.g
ACCDH919064DH919065
length1,166368
definitionDH919064|Mus musculus domesticus DNA, BAC clone: B6Ng01-113D09, 5' end.DH919065|Mus musculus domesticus DNA, BAC clone: B6Ng01-113D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,391,924 - 4,393,101)(4,278,307 - 4,278,680)
sequence
gaattcatcagtattacaaagcatcatttagctttacttgtaactctatt
ctggttggatactgttcccaaactatgatgacatctcatgagtgtgcatt
accttttcattccattagctggagaactcctgaaatgacaaaattaaaga
agtacaaagcaatctttggatatacttccttcttgagttattactagtgt
ctaggccagagtttcctctaaaattttacataataactttaattggaggc
gagcagtgatgtcaattattatataatatttatatacagtactcagtagg
ttacttatctgttattttaaatgtgcttcctagcgcagtattggtttctc
cctcagattagagtttatttttacatatgtcctaaaatgtctgaaatgtc
ttttttaaattttaatacttttaatttatttatttattttgatgtagggt
gcatttggagtcactcatacatgccagagctattcatatcaaggtctgag
gacagttgcaggactgggttttctcctgccactttataggttctatgaac
tgatgccagaacttggttgtaagtacctttacctattaagttatattgcc
agctcctcaatctttcttaggaataatgatattatagccaatcatgtctc
aatatggaagagcagggtcaaagaaagaatttctaattttaccttaactt
ggaatatcaggaaaaatggagtcaaattttgctttagtttggaaagattc
atttagtgcatctcaggtggtatctgccaatgttttgttttgtttttttt
cacctggtagtaacatcaactttgtctaccaagattgaactataagccta
ctactataagtagtatgacaatctccctcacagactcaagtatttaggca
cttggtccccagatggtcccattgtttgaggagatgatgtggcatggcta
gatgaagcaggtagcttggggcagcaagctttgaagttttttgctttaac
cactaccagttcactctacttgtcaaatggattgctatttaatctcataa
ctataggattagataggaatccttaatgattgatattatctgaggtcaat
ttaggatattttgaaatcttgagatccttaaaaaacgcactgccttatct
aattcttatccttaat
tttaaaactctgaaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtatgtatgtatgtatgtatgtatgtgtattttaacagccattttcc
tctactctaagtttctttcctttacaggtcacatcagagccttcttagtg
catttcatataattttagagaacttgttgtctgtatatcccattgggaca
tgaattctgtaggaggggacacttgaaatggtgatatcattagttcatgg
ttatggaatgaaagctgaatacctttgaatgatatattttaagaaggctg
gatgagaagccaatgaaataagataatgaaagagtcgtgtctagatagtc
ttggtttaactgagccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_4391924_4393101
seq2: B6Ng01-113D09.b_48_1213 (reverse)

seq1  ATTAAGGATAAGAATTAGAATTAAGGACTAGGTCGATTATTAAGGATTCT  50
      |||||||||||||||||||  |||||   ||  || || ||||||||   
seq2  ATTAAGGATAAGAATTAGA--TAAGG--CAGTGCGTTTTTTAAGGATCTC  46

seq1  AAGATATCTAAAATAATCCTAAAATTGTACCTAAGATAATATCTAATCAT  100
      ||||| || ||||| ||||| |||||| |||| |||||||||| ||||||
seq2  AAGATTTC-AAAAT-ATCCT-AAATTG-ACCTCAGATAATATC-AATCAT  91

seq1  TAAGGATATCTATCTAATCCTATAGGTATTGAGAATAAATAGCAATCCAT  150
      |||||||  |||||||||||||||| || ||||| |||||||||||||||
seq2  TAAGGATTCCTATCTAATCCTATAGTTA-TGAGATTAAATAGCAATCCAT  140

seq1  TTGACAAGTAGAGTGAACTGGTAGTGGGTTAAGGCAAAAAACTTTCAAAG  200
      ||||||||||||||||||||||||| |||||| ||||||||| |||||||
seq2  TTGACAAGTAGAGTGAACTGGTAGT-GGTTAAAGCAAAAAAC-TTCAAAG  188

seq1  CCTGCCTGCCCCAAGCTACCTGCTTCATCTAGCCATGCCACATCATCTCC  250
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTG-CTGCCCCAAGCTACCTGCTTCATCTAGCCATGCCACATCATCTCC  237

seq1  TCAAACAATGGGACCATCTGGGGACCAAGTGCCTAAATACTTGAGTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAATGGGACCATCTGGGGACCAAGTGCCTAAATACTTGAGTCTGT  287

seq1  GAGGGAGATTGTCATACTACTTATAGTAGTAGGCTTATAGTTCATTCTTG  350
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGGGAGATTGTCATACTACTTATAGTAGTAGGCTTATAGTTCAATCTTG  337

seq1  GTAGACAAAGTTGATGTTACTACCAGGTG-AAAAAAACAAAACAAAACAT  399
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTAGACAAAGTTGATGTTACTACCAGGTGAAAAAAAACAAAACAAAACAT  387

seq1  TGGCAGATACCACCTGAGATGCACTAAATGAATCTTTCCAAACTAAAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATACCACCTGAGATGCACTAAATGAATCTTTCCAAACTAAAGCA  437

seq1  AAATTTGACTCCATTTTTCCTGATATTCCAAGTTAAGGTAAAATTAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGACTCCATTTTTCCTGATATTCCAAGTTAAGGTAAAATTAGAAA  487

seq1  TTCTTTCTTTGACCCTGCTCTTCCATATTGAGACATGATTGGCTATAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTGACCCTGCTCTTCCATATTGAGACATGATTGGCTATAATA  537

seq1  TCATTATTCCTAAGAAAGATTGAGGAGCTGGCAATATAACTTAATAGGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTCCTAAGAAAGATTGAGGAGCTGGCAATATAACTTAATAGGTA  587

seq1  AAGGTACTTACAACCAAGTTCTGGCATCAGTTCATAGAACCTATAAAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACTTACAACCAAGTTCTGGCATCAGTTCATAGAACCTATAAAGTG  637

seq1  GCAGGAGAAAACCCAGTCCTGCAACTGTCCTCAGACCTTGATATGAATAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAAAACCCAGTCCTGCAACTGTCCTCAGACCTTGATATGAATAG  687

seq1  CTCTGGCATGTATGAGTGACTCCAAATGCACCCTACATCAAAATAAATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCATGTATGAGTGACTCCAAATGCACCCTACATCAAAATAAATAA  737

seq1  ATAAATTAAAAGTATTAAAATTTAAAAAAGACATTTCAGACATTTTAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAAAAGTATTAAAATTTAAAAAAGACATTTCAGACATTTTAGGA  787

seq1  CATATGTAAAAATAAACTCTAATCTGAGGGAGAAACCAATACTGCGCTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTAAAAATAAACTCTAATCTGAGGGAGAAACCAATACTGCGCTAG  837

seq1  GAAGCACATTTAAAATAACAGATAAGTAACCTACTGAGTACTGTATATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACATTTAAAATAACAGATAAGTAACCTACTGAGTACTGTATATAA  887

seq1  ATATTATATAATAATTGACATCACTGCTCGCCTCCAATTAAAGTTATTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATAATAATTGACATCACTGCTCGCCTCCAATTAAAGTTATTAT  937

seq1  GTAAAATTTTAGAGGAAACTCTGGCCTAGACACTAGTAATAACTCAAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTTAGAGGAAACTCTGGCCTAGACACTAGTAATAACTCAAGAA  987

seq1  GGAAGTATATCCAAAGATTGCTTTGTACTTCTTTAATTTTGTCATTTCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTATATCCAAAGATTGCTTTGTACTTCTTTAATTTTGTCATTTCAG  1037

seq1  GAGTTCTCCAGCTAATGGAATGAAAAGGTAATGCACACTCATGAGATGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCCAGCTAATGGAATGAAAAGGTAATGCACACTCATGAGATGTC  1087

seq1  ATCATAGTTTGGGAACAGTATCCAACCAGAATAGAGTTACAAGTAAAGCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGTTTGGGAACAGTATCCAACCAGAATAGAGTTACAAGTAAAGCT  1137

seq1  AAATGATGCTTTGTAATACTGATGAATTC  1178
      |||||||||||||||||||||||||||||
seq2  AAATGATGCTTTGTAATACTGATGAATTC  1166

seq1: chr15_4278307_4278680
seq2: B6Ng01-113D09.g_69_442

seq1  GAATTCTTTAAAACTCTGAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAACTCTGAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTG  50

seq1  TGTGTGTGTGTATGTATGTATGTATGTATGTATGTGTATTTTAACAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTATGTATGTATGTATGTATGTATGTGTATTTTAACAGCCA  100

seq1  TTTTCCTCTACTCTAAGTTTCTTTCCTTTACAGGTCACATCAGAGCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTACTCTAAGTTTCTTTCCTTTACAGGTCACATCAGAGCCTTC  150

seq1  TTAGTGCATTTCATATAATTTTAGAGAACTTGTTGTCTGTATATCCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCATTTCATATAATTTTAGAGAACTTGTTGTCTGTATATCCCATT  200

seq1  GGGACATGAATTCTGTAGGAGGGGACACTTGAAATGGTGATATCATTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATGAATTCTGTAGGAGGGGACACTTGAAATGGTGATATCATTAGT  250

seq1  TCATGGTTATGGAATGAAAGCTGAATACCTTTGAAGGAGATATGTTAAGA  300
      ||||||||||||||||||||||||||||||||||| || |||| ||||||
seq2  TCATGGTTATGGAATGAAAGCTGAATACCTTTGAATGATATATTTTAAGA  300

seq1  AGGCTGGATGAGAAGCCAATGAAATAAGATAATGAAAGAGTCGTGTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGATGAGAAGCCAATGAAATAAGATAATGAAAGAGTCGTGTCTAG  350

seq1  ATAGTCTTGGAGTAACTGAGCCTA  374
      ||||||||||  ||||||||||||
seq2  ATAGTCTTGGTTTAACTGAGCCTA  374