BAC Information

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BAC

Clone NameB6Ng01-113D20
Chromosome2 (Build37)15 (Build37)
Map Location 153,111,127 - 153,112,10131,342,037 - 31,342,457
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1
Downstream geneKif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113D20.bB6Ng01-113D20.g
ACCDH919085DH919086
length959524
definitionDH919085|Mus musculus domesticus DNA, BAC clone: B6Ng01-113D20, 5' end.DH919086|Mus musculus domesticus DNA, BAC clone: B6Ng01-113D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(153,111,127 - 153,112,101)(31,342,037 - 31,342,457)
sequence
gaattcaaggtcatctttggctacacatagagttcctgactagcttgggc
tatgtaagagaggaagaaagagagaaagagagaaagagagaaagagaaag
agaaagagaaagagaaagagaaagagaaagagaaagagaaagaggaagag
gaagaggaagaggaagagaaagagaaagagaaagagaaagagaaagagaa
agagaaagagaagaaagaaagaaagaaaggaaggaaggaaggaagaaagg
aagaaaggaagaaaggaagaaaggaaggaaggaaggaaggaagaaaggaa
gaaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaaggaaga
aaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaagggaaaat
tgaaagaacaaaggaagggggtggggaaaaaggagggactgggactggca
tggttgtgactaaatatttgggactcttatcattttcacaacatctaaaa
gtaaaaaggtctgactcaaatggcttctttctcccactgccatttaggga
gatagaagcatttgacactccaccattccaatgctaatattatgcttttc
tttttaaagctgttggtgagaaagaaatgatgtttcttcttttttcctga
agatttgctatgtagcccaaactgtcactagtcattttgttgttgttgtt
tctgtgactaattacctgacacagactaacgacaaaagactttatcctgg
ttcattgtttaaagggatacaatgtatcctggtggggaaggcaatgatcc
taatggcgggagcaggaggcagctcatttgccaaacaaatgctgcccctc
ccttagctttctcctgtgtcatctactccttgaaggcagtttcccccccc
tccatcaatctttctggaaccacttttagacttttccggatgtcggcttc
tatgattcc
catgaacgtctactatctctatccttgttaaagcacaagctttattcgag
gcccatgtgttctaacccgggatttggaactggtggtgggaatttggggg
gtgaccgcagacagccctacctgtgagtgtctcagtggctgcaaggactg
gtgtgagggcccttgagggactcccagatcccagctgccctctagttcct
aattcttccttctccttgtgctgatcccgtacctgcacaggtgagtaagg
aggctcgtgtggtggggggcaccattcaacaggcaaggactcgggatact
ggtcagatgcaaattgtagaccaccacccaaatttttgtgcatgtcagta
tattgatatttgagattctcaagagaggtatttatttgaaattcaaatct
aaccacgtggatgttttatctggcaactcttccactcatctcttaccaca
gctggtggggtgaagaactaagactgatgcccacgtctgctccaagtcct
atgactaagtcaggagatagcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_153111127_153112101
seq2: B6Ng01-113D20.b_47_1005

seq1  GAATTCAAGGTCATCTTTGGCTACACATAGAGTTCCTGACTAGCTTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCATCTTTGGCTACACATAGAGTTCCTGACTAGCTTGGGC  50

seq1  TATGTAAGAGAGGAAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGAGAGGAAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAAAG  100

seq1  AGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGGAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGGAAGAG  150

seq1  GAAGAGGAAGAGGAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAGAGGAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAA  200

seq1  AGAGAAAGAGAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAGAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGAAAGG  250

seq1  AAGAAAGGAAGAAAGGAAGAAAGGAAGGAAGGAAGGAAGGAAGAAAGGAA  300
      ||||||||||||||||||||||||||||||||||||              
seq2  AAGAAAGGAAGAAAGGAAGAAAGGAAGGAAGGAAGG--------------  286

seq1  GAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGA  350
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --AAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGA  334

seq1  AAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAA  384

seq1  GGAAGAAAGGGAAAATTGAAAGAACAAAGGAAGGGGGTGGGGAAAAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGGGAAAATTGAAAGAACAAAGGAAGGGGGTGGGGAAAAAGGA  434

seq1  GGGACTGGGACTGGCATGGTTGTGACTAAATATTTGGGACTCTTATCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGGGACTGGCATGGTTGTGACTAAATATTTGGGACTCTTATCATT  484

seq1  TTCACAACATCTAAAAGTAAAAAGGTCTGACTCAAATGGCTTCTTTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACATCTAAAAGTAAAAAGGTCTGACTCAAATGGCTTCTTTCTCC  534

seq1  CACTGCCATAGTAGGGAGATAGAAGCATTTGACACTCCACCATTCCAATG  600
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCAT-TTAGGGAGATAGAAGCATTTGACACTCCACCATTCCAATG  583

seq1  CTAATATTATGCTTTTCTTTTTAAAGCTGTTGGTGAGAAAGAAATGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTATGCTTTTCTTTTTAAAGCTGTTGGTGAGAAAGAAATGATGT  633

seq1  TTCTTC-TTTTTCCTGAAGATTTGCTATGTAGCCCAAACTGTCACTAGTC  699
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTTTTCCTGAAGATTTGCTATGTAGCCCAAACTGTCACTAGTC  683

seq1  ATTTTGTTGTTGTTGTTTCTGTGACTAATTACCTGACAGAGACTAAGGAG  749
      |||||||||||||||||||||||||||||||||||||| ||||||| || 
seq2  ATTTTGTTGTTGTTGTTTCTGTGACTAATTACCTGACACAGACTAACGAC  733

seq1  AAAAGACTTTATCCTGGTTCATTGTTTAAAGGGATACAATGTATCCTGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTTTATCCTGGTTCATTGTTTAAAGGGATACAATGTATCCTGGT  783

seq1  GGGGAAGGC-ATGATCCTAATGGCAGGAGCAGGAGGCAGCTCATTTGCAG  848
      ||||||||| |||||||||||||| |||||||||||||||||||||||  
seq2  GGGGAAGGCAATGATCCTAATGGCGGGAGCAGGAGGCAGCTCATTTGC-C  832

seq1  AAACAAATGCTGCCACTCCCTTAGCTTTCTCCTGTGTCATTTACTCC-TG  897
      |||||||||||||| ||||||||||||||||||||||||| |||||| ||
seq2  AAACAAATGCTGCCCCTCCCTTAGCTTTCTCCTGTGTCATCTACTCCTTG  882

seq1  AAGGCAGTTT-CCCCCACTCCATCAAATCTTTCTGGAAGCAACCTATAGA  946
      |||||||||| ||||| ||||||| ||||||||||||| | || | ||||
seq2  AAGGCAGTTTCCCCCCCCTCCATC-AATCTTTCTGGAA-CCACTTTTAGA  930

seq1  CATATCCAGAGGTCGGCTTCTATGATTCC  975
      | | ||| || ||||||||||||||||||
seq2  CTTTTCCGGATGTCGGCTTCTATGATTCC  959

seq1: chr15_31342037_31342457
seq2: B6Ng01-113D20.g_178_598

seq1  ACCGCAGACAGCCCTACCTGTGAGTGTCTCAGTGGCTGCAAGGACTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCAGACAGCCCTACCTGTGAGTGTCTCAGTGGCTGCAAGGACTGGTG  50

seq1  TGAGGGCCCTTGAGGGACTCCCAGATCCCAGCTGCCCTCTAGTTCCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCCCTTGAGGGACTCCCAGATCCCAGCTGCCCTCTAGTTCCTAAT  100

seq1  TCTTCCTTCTCCTTGTGCTGATCCCGTACCTGCACAGGTGAGTAAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCTCCTTGTGCTGATCCCGTACCTGCACAGGTGAGTAAGGAGG  150

seq1  CTCGTGTGGTGGGGGGCACCATTCAACAGGCAAGGACTCGGGATACTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGTGGTGGGGGGCACCATTCAACAGGCAAGGACTCGGGATACTGGT  200

seq1  CAGATGCAAATTGTAGACCACCACCCAAATTTTTGTGCATGTCAGTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCAAATTGTAGACCACCACCCAAATTTTTGTGCATGTCAGTATAT  250

seq1  TGATATTTGAGATTCTCAAGAGAGGTATTTATTTGAAATTCAAATCTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTGAGATTCTCAAGAGAGGTATTTATTTGAAATTCAAATCTAAC  300

seq1  CACGTGGATGTTTTATCTGGCAACTCTTCCACTCATCTCTTACCACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGATGTTTTATCTGGCAACTCTTCCACTCATCTCTTACCACAGCT  350

seq1  GGTGGGGTGAAGAACTAAGACTGATGCCCACGTCTGCTCCAAGTCCTAGG  400
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGTGGGGTGAAGAACTAAGACTGATGCCCACGTCTGCTCCAAGTCCTATG  400

seq1  ACTAAGTCAGGAGATAGCATC  421
      |||||||||||||||||||||
seq2  ACTAAGTCAGGAGATAGCATC  421