BAC Information

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BAC

Clone NameB6Ng01-114P11
Chromosome15 (Build37)
Map Location 28,946,555 - 29,072,980
singlet/doubletdoublet
Overlap genenone
Upstream geneTrio, LOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114P11.bB6Ng01-114P11.g
ACCDH920352DH920353
length1,0501,039
definitionDH920352|Mus musculus domesticus DNA, BAC clone: B6Ng01-114P11, 5' end.DH920353|Mus musculus domesticus DNA, BAC clone: B6Ng01-114P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,946,555 - 28,947,609)(29,071,952 - 29,072,980)
sequence
gaattcatgaaggtcagagaatcatggcagccagagcaagaagataaaat
cctcaactgcaatcatagagtagacagacaggaagaatcagagctagggt
atgtgaatgaaaattcctgaaaagaagctgcgtctggctgtgaacacagc
ctcctgaagcagtctgtgtctgctgggtggactggaatttcagtactgtg
gaggggttgggattttgcaggttaagatattacttttgatgttgaggtct
agttttagctttccagatcagtcactgcttgaccccattctgtatctaag
caaatatctcctgataataaacaaaaaaaattgagaatctattaacatag
aatgattttttaataataaatttaataagagacctcttaaaaactactga
cttagaaggacattaactcccacaaatccaagagttgggaatggaatcag
tttatatcttaggctccctgcccccggaacctgccccatctcattgaacc
ctgtctctctggtgtacccagcaatatatttaaaaattgcctgaacttat
gaatttctttgttttgtaaaagtacaaaaacttcataaatatgcatctac
aatggaagatggaacttgtagcaacctaatgtgtgtttccccacactatg
gtcaatcaaaccaggtccagaggaaaatctcttattcccttaaagatggt
tgccattgattttttgtttgcttgtttgttttgttttattttattttatt
tttgttgttttcatttatttttatctgtcaacaggtcatggcacctaaca
cagagctcagagattgattcatgcttcaccttaggaatcacttggattgg
aatccattgccttaatgaactcccagagcctagccatctgtacatctgaa
ttattaccttgggtgaattgatggcttcagtcctgttcctctccatacct
gatcatgtcccctttccccttcctgtccctttccactcaggtcttcttct
cctctggcctttgtgtttcctccttcccctctcagtgagaattgagcatc

gaattcaaacagtaaaagagcattagtaggctggcagtaataattaaaca
cacattttgacttgttatttggaaaggtgattatatttttcacttctctc
tgaggaaaattaatattaattttaaagacaaattttattaaaattgtttt
aaaaattaaatacattattttaaactttagtcacttttcagattttcttt
ttctcctactctctaaaatggtcatgctgtcagtatgagaaaaattcagg
agtactcacagttatctaactcagtacacttattaatgtaatacagttat
tttctcatcattatttggataataaaataaatgacatatttgaaccaaaa
actatagaaattgttttatgtggccaatcttccataatgttaactcagac
aagctgagtgtagagaatactaaccaagtgcctataacacgagttcagat
aaagcacattcatgaagctggaacctgacgtctgtaaagataacaagtca
atactgcctgcaggccacattggaaaagagtatgatatctgctgtgaatt
gtatataattacaatggatggctgttcacacagctatgaagtcattagga
gatcaggtaaaattaatttctgttggagcataaaccttcataacaagtta
aagtatcattgcctctatttcaatgccctcaagcaacctcacgtctatga
atgcatgatagtgagtgttaggaaggagtctagcaaaaaaaaaacaaaaa
agtcaatggattagggaattgataaagtcatgtgttaattctaaattcat
cttccaaattaaagctaattggatattggataattatcttcctttggcaa
gtaacagttactacttcaaattattatattctatcactttattgcatgta
tagtctggaatttaatttgtgatttattatttttaactaaaatatgttct
tcctgtctttgtggatatgtataccatatgagagttcccttcatcatgtg
accactgcattggcatatctttactgtaacaatctgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28946555_28947609
seq2: B6Ng01-114P11.b_47_1096

seq1  GAATTCATGAAGGTCAGAGAATCATGGCAGCCAGAGCAAGAAGATAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAGGTCAGAGAATCATGGCAGCCAGAGCAAGAAGATAAAAT  50

seq1  CCTCAACTGCAATCATAGAGTAGACAGACAGGAAGAATCAGAGCTAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACTGCAATCATAGAGTAGACAGACAGGAAGAATCAGAGCTAGGGT  100

seq1  ATGTGAATGAAAATTCCTGAAAAGAAGCTGCGTCTGGCTGTGAACACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATGAAAATTCCTGAAAAGAAGCTGCGTCTGGCTGTGAACACAGC  150

seq1  CTCCTGAAGCAGTCTGTGTCTGCTGGGTGGACTGGAATTTCAGTACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAGCAGTCTGTGTCTGCTGGGTGGACTGGAATTTCAGTACTGTG  200

seq1  GAGGGGTTGGGATTTTGCAGGTTAAGATATTACTTTTGATGTTGAGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTTGGGATTTTGCAGGTTAAGATATTACTTTTGATGTTGAGGTCT  250

seq1  AGTTTTAGCTTTCCAGATCAGTCACTGCTTGACCCCATTCTGTATCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGCTTTCCAGATCAGTCACTGCTTGACCCCATTCTGTATCTAAG  300

seq1  CAAATATCTCCTGATAATAAACAAAAAAAATTGAGAATCTATTAACATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCTCCTGATAATAAACAAAAAAAATTGAGAATCTATTAACATAG  350

seq1  AATGATTTTTTAATAATAAATTTAATAAGAGACCTCTTAAAAACTACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTTTTAATAATAAATTTAATAAGAGACCTCTTAAAAACTACTGA  400

seq1  CTTAGAAGGACATTAACTCCCACAAATCCAAGAGTTGGGAATGGAATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGGACATTAACTCCCACAAATCCAAGAGTTGGGAATGGAATCAG  450

seq1  TTTATATCTTAGGCTCCCTGCCCCCGGAACCTGCCCCATCTCATTGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCTTAGGCTCCCTGCCCCCGGAACCTGCCCCATCTCATTGAACC  500

seq1  CTGTCTCTCTGGTGTACCCAGCAATATATTTAAAAATTGCCTGAACTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTGGTGTACCCAGCAATATATTTAAAAATTGCCTGAACTTAT  550

seq1  GAATTTCTTTGTTTTGTAAAAGTACAAAAACTTCATAAATATGCATCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTTTGTTTTGTAAAAGTACAAAAACTTCATAAATATGCATCTAC  600

seq1  AATGGAAGATGGAACTTGTAGCAACCTAATGTGTG-TTCCCCACACTATG  649
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATGGAAGATGGAACTTGTAGCAACCTAATGTGTGTTTCCCCACACTATG  650

seq1  GTCAATCAAACCAGGTCCAGAGGAAAATCTCTTATTCCCTTAAAGATGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCAAACCAGGTCCAGAGGAAAATCTCTTATTCCCTTAAAGATGGT  700

seq1  TGCCATTGA-TTTTTGTTTGCTTGTTTGTTTTGTTTTATTTTATTTTATT  748
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTGATTTTTTGTTTGCTTGTTTGTTTTGTTTTATTTTATTTTATT  750

seq1  TTTGTTGTTTTCATTTA-TTTTATCTGTCAACA-GTCATGGCACCTAACA  796
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  TTTGTTGTTTTCATTTATTTTTATCTGTCAACAGGTCATGGCACCTAACA  800

seq1  CAGAGCTCAGAGATTGATTCATGCTTCACCTTAGGAATCACTT-GAATGG  845
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  CAGAGCTCAGAGATTGATTCATGCTTCACCTTAGGAATCACTTGGATTGG  850

seq1  AATCCATTTGCCTTAATGAACTCCCAGAGCCTAGGCCATCTGGACATCTG  895
      |||||| |||||||||||||||||||||||||| |||||||| |||||||
seq2  AATCCA-TTGCCTTAATGAACTCCCAGAGCCTA-GCCATCTGTACATCTG  898

seq1  AAATTATTACCTTGGGTGAATTGATGGCTTCAGTCCTGTTCTCTCTCCAT  945
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  -AATTATTACCTTGGGTGAATTGATGGCTTCAGTCCTGTTC-CTCTCCAT  946

seq1  ACCTGATCATGTTCCCCTTTCCCCCTTCCTGTCCCCTTTCCCACTCAGGT  995
      ||||||||||| |||||||| ||||||||||||||  || ||||||||||
seq2  ACCTGATCATG-TCCCCTTT-CCCCTTCCTGTCCC--TTTCCACTCAGGT  992

seq1  CCTTCTCTCCCTCT-GCCCTTGTGTTGCTTTCTTCTCCCTCTCAAGTGAG  1044
       |||||   ||||| ||| ||||||| | | |||| ||||||| ||||||
seq2  -CTTCTTCTCCTCTGGCCTTTGTGTTTCCTCCTTC-CCCTCTC-AGTGAG  1039

seq1  -ATTGAGGCATC  1055
       ||||| |||||
seq2  AATTGA-GCATC  1050

seq1: chr15_29071952_29072980
seq2: B6Ng01-114P11.g_67_1084 (reverse)

seq1  ATATGGCCAATGGCAGTTGGTCACAATGATTGAAGGGGAACTCCTTCATA  50
      |||| |||||| |||| ||||||| |||| |||| ||||||||  |||||
seq2  ATAT-GCCAAT-GCAG-TGGTCAC-ATGA-TGAA-GGGAACTC--TCATA  42

seq1  TGGTATACATAATCCACAAAGACAGGAAGAACAATATTTTAGTTAAAAAT  100
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  TGGTATACAT-ATCCACAAAGACAGGAAGAAC-ATATTTTAGTTAAAAAT  90

seq1  AATAAATCACAAATTAAATTCCAGACTATACATGCAATAAAGTGATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCACAAATTAAATTCCAGACTATACATGCAATAAAGTGATAGAA  140

seq1  TATAATAATTTGAAGTAGTAACTGTTACTTGCCAAAGGAAGATAATTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAATTTGAAGTAGTAACTGTTACTTGCCAAAGGAAGATAATTATC  190

seq1  CAATTATCCAATTAGCTTTAATTTGGAAGATGAATTTAGAATTAACACAT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAA-TATCCAATTAGCTTTAATTTGGAAGATGAATTTAGAATTAACACAT  239

seq1  GACTTTATCAATTCCCTAATCCATTGACTTTTTTGTTTTTTTTTTGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATCAATTCCCTAATCCATTGACTTTTTTGTTTTTTTTTTGCTAG  289

seq1  ACTCCTTCCTAACACTCACTATCATGCATTCATAGACGTGAGGTTGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCCTAACACTCACTATCATGCATTCATAGACGTGAGGTTGCTTG  339

seq1  AGGGCATTGAAATAGAGGCAATGATACTTTAACTTGTTATGAAGGTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTGAAATAGAGGCAATGATACTTTAACTTGTTATGAAGGTTTAT  389

seq1  GCTCCAACAGAAATTAATTTTACCTGATCTCCTAATGACTTCATAGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAACAGAAATTAATTTTACCTGATCTCCTAATGACTTCATAGCTGT  439

seq1  GTGAACAGCCATCCATTGTAATTATATACAATTCACAGCAGATATCATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAGCCATCCATTGTAATTATATACAATTCACAGCAGATATCATAC  489

seq1  TCTTTTCCAATGTGGCCTGCAGGCAGTATTGACTTGTTATCTTTACAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCAATGTGGCCTGCAGGCAGTATTGACTTGTTATCTTTACAGAC  539

seq1  GTCAGGTTCCAGCTTCATGAATGTGCTTTATCTGAACTCGTGTTATAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTTCCAGCTTCATGAATGTGCTTTATCTGAACTCGTGTTATAGGC  589

seq1  ACTTGGTTAGTATTCTCTACACTCAGCTTGTCTGAGTTAACATTATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTAGTATTCTCTACACTCAGCTTGTCTGAGTTAACATTATGGAA  639

seq1  GATTGGCCACATAAAACAATTTCTATAGTTTTTGGTTCAAATATGTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCCACATAAAACAATTTCTATAGTTTTTGGTTCAAATATGTCATT  689

seq1  TATTTTATTATCCAAATAATGATGAGAAAATAACTGTATTACATTAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTATCCAAATAATGATGAGAAAATAACTGTATTACATTAATAA  739

seq1  GTGTACTGAGTTAGATAACTGTGAGTACTCCTGAATTTTTCTCATACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTGAGTTAGATAACTGTGAGTACTCCTGAATTTTTCTCATACTGA  789

seq1  CAGCATGACCATTTTAGAGAGTAGGAGAAAAAGAAAATCTGAAAAGTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGACCATTTTAGAGAGTAGGAGAAAAAGAAAATCTGAAAAGTGAC  839

seq1  TAAAGTTTAAAATAATGTATTTAATTTTTAAAACAATTTTAATAAAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTAAAATAATGTATTTAATTTTTAAAACAATTTTAATAAAATTT  889

seq1  GTCTTTAAAATTAATATTAATTTTCCTCAGAGAGAAGTGAAAAATATAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAAAATTAATATTAATTTTCCTCAGAGAGAAGTGAAAAATATAAT  939

seq1  CACCTTTCCAAATAACAAGTCAAAATGTGTGTTTAATTATTACTGCCAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCCAAATAACAAGTCAAAATGTGTGTTTAATTATTACTGCCAGC  989

seq1  CTACTAATGCTCTTTTACTGTTTGAATTC  1029
      |||||||||||||||||||||||||||||
seq2  CTACTAATGCTCTTTTACTGTTTGAATTC  1018