BAC Information

Click to search

BAC

Clone NameB6Ng01-115A19
Chromosome15 (Build37)
Map Location 24,846,384 - 24,847,450
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666989, LOC666999, LOC100040492, LOC100040499
Downstream geneLOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115A19.bB6Ng01-115A19.g
ACCDH920414DH920415
length1,0611,051
definitionDH920414|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A19, 5' end.DH920415|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacaccctcggcacatgcg
cagattatttgtttaccacttagaacacagctgtcagcgccatcttgtaa
cggcgaatgtgggcgcggctcccaacagtttatatttcccagtttggtgg
aatgtaggtttttgttttgttttgtttttgttttttatgattctctggtt
ttccttggtgtctgttatctccccttttcatttctggttttatcaatttg
actattctctttatgtgtattagtttggataagggtacaaacccatctta
aggcaaggccccatgccctgtagtaaatagccagcagaaaacaaactcag
tagtacttttggatgtttttattttgttgatgttttaaaatttagtctca
taatgttttgtctgggcatatttttacaagtctttttcttgtatattgtg
atttacaattttgtgtttttaggggagttctgtatgtgtcgatgtgtgta
ttaatgtctttctatgtttctcctgccttttctatgactctttgtttttc
tgtttgttctttctgttcttttcaggttgttctctctctttttttgcttt
tattttagtctctctctctctgtctctatctctctgtgtgtctgtctctg
tctctgctctgtctccctatgtccttccttccttcctttccctctctctc
tctttctctctctctctttctttctttctttctttctttctttctttctt
tctttctttctttcttccttccttccttccttccatgcctgattgttttc
taatgggagagaacaaggaaggatacaggtttgtgtgggtggggagatgg
ggaggctctgtgaggagttagaggagggagagcctcaatcacattcctgg
tttgaaaaatgtcttcagtaaaaagttctgaattaaagcaatgtagatct
tagctgtattagtaaatctttatcttgtaaagggatatagctcttcaaaa
tttaacatatt
gaattctgtgatagggcaggaatgggtttccatcatgctgatcaactgat
tatccagcagcctcacaaatgaccttatcaattagaatctgagtgaagaa
gcatccgagactcactgcggttacacaattcttctctatggctcgatgaa
atactaattctgagtttctgaatagaccccaacagcaaaagaagttaggc
atttggaaaggtattaggccaagctctctaggcagaagcccatgtggggg
caggtttataaagggaagaatgggttctcactaaccagtggcattttcct
aactctacaggctcctggttaagctctgtaagatacacacatgaaggtag
ttcaactttgtttttgttttgttttttttttttttcagttttgccttcct
gggatatgtgagctcagatgtcatcttacatcaaagcccagagaaaggac
tattaagcaaaagagtgaactgcagagtagccatgtttaatgcagaatta
atttcagatactgcagactcaagtggaactttatgcccagtgatattttt
caatgctctatagttttgtcacatagtatttgtgaatttgaaatgaataa
tgtggtcctataacttttttgttcagaagaaaatagatatctgagattca
ttcaagttactctgcctgtattttcctagggatgagaaagatcatctcta
tttctttgaggctaaatgtctcactaacaatacactgtgtttttaatttt
tttcttcagtaataatttttcattcccacaaaaaccagaatgcatgttta
ttcctgactcccagagaacacaggaacttattccttagaaaatagttaga
aaataataaaatcttattttcataagaaagaaaaagcaaattgaaaccaa
tagcaagatttacgtagagcagatatcaatgagaaatacattagggatat
ttaaattttttccatttctcacatcttctagcaaaagcatgtatttctca
atatattcatcatgattgatgatagtatacacatttgttaatttagagtt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_24846384_24847450
seq2: B6Ng01-115A19.g_65_1115

seq1  GAATTCTGTGATAGGGCAGGAATGGGTTTCCATCATGCTGATCAACTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGATAGGGCAGGAATGGGTTTCCATCATGCTGATCAACTGAT  50

seq1  TATCCAGCAGCCTCACAAATGACCTTATCAATTAGAATCTGAGTGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGCAGCCTCACAAATGACCTTATCAATTAGAATCTGAGTGAAGAA  100

seq1  GCATCCGAGACTCACTGCGGTTACACAATTCTTCTCTATGGCTCGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCGAGACTCACTGCGGTTACACAATTCTTCTCTATGGCTCGATGAA  150

seq1  ATACTAATTCTGAGTTTCTGAATAGACCCCAACAGCAAAAGAAGTTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAATTCTGAGTTTCTGAATAGACCCCAACAGCAAAAGAAGTTAGGC  200

seq1  ATTTGGAAAGGTATTAGGCCAAGCTCTCTAGGCAGAAGCCCATGTGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAAGGTATTAGGCCAAGCTCTCTAGGCAGAAGCCCATGTGGGGG  250

seq1  CAGGTTTATAAAGGGAAGAATGGGTTCTCACTAACCAGTGGCATTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTATAAAGGGAAGAATGGGTTCTCACTAACCAGTGGCATTTTCCT  300

seq1  AACTCTACAGGCTCCTGGTTAAGCTCTGTAAGATACACACATGAAGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACAGGCTCCTGGTTAAGCTCTGTAAGATACACACATGAAGGTAG  350

seq1  TTCAACTTTGTTTTTGTTTTGTTTTTTTTTTTTTTCAGTTTTGCCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTTTGTTTTTGTTTTGTTTTTTTTTTTTTTCAGTTTTGCCTTCCT  400

seq1  GGGATATGTGAGCTCAGATGTCATCTTACATCAAAGCCCAGAGAAAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATGTGAGCTCAGATGTCATCTTACATCAAAGCCCAGAGAAAGGAC  450

seq1  TATTAAGCAAAAGAGTGAACTGCAGAGTAGCCATGTTTAATGCAGAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCAAAAGAGTGAACTGCAGAGTAGCCATGTTTAATGCAGAATTA  500

seq1  ATTTCAGATACTGCAGACTCAAGTGGAACTTTATGCCCAGTGATATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGATACTGCAGACTCAAGTGGAACTTTATGCCCAGTGATATTTTT  550

seq1  CAATGCTCTATAGTTTTGTCACATAGTATTTGTGAATTTGAAATGAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCTATAGTTTTGTCACATAGTATTTGTGAATTTGAAATGAATAA  600

seq1  TGTGGTCCTATAACTTTTTTGTTCAGAAGAAAATAGATATCTGAGATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCCTATAACTTTTTTGTTCAGAAGAAAATAGATATCTGAGATTCA  650

seq1  TTCAAGTTACTCTGCCTGTATTTTCCTAGGGATGAGAAAGATCATCTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTACTCTGCCTGTATTTTCCTAGGGATGAGAAAGATCATCTCTA  700

seq1  TTTCTTTGAGGCTAAATGTCTCACTAACAATACACTGTGTTTTTAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAGGCTAAATGTCTCACTAACAATACACTGTGTTTTTAATTTT  750

seq1  TTTCTTCAGTAATAATTTTTCATTCCCACAAAAACCAGAATGCATGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCAGTAATAATTTTTCATTCCCACAAAAACCAGAATGCATGTTTA  800

seq1  TTCCTGACTCCCAGAGAACACAGGAACTTATTCCTTAGAAAATAGTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACTCCCAGAGAACACAGGAACTTATTCCTTAGAAAATAGTTAGA  850

seq1  AAATAATAAAATCTTATTTTCATAAGAAAGAAAAAAGCAAAATTGAAACC  900
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  AAATAATAAAATCTTATTTTCATAAGAAAG-AAAAAGC-AAATTGAAACC  898

seq1  AATAGCAAGATTTACGTAGAGCAGATATCAATGAGAAATAACATTAGGGA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  AATAGCAAGATTTACGTAGAGCAGATATCAATGAGAAAT-ACATTAGGG-  946

seq1  ATATTTAAATTTTTTCCATTTCTCACATCTTCTAAGCAAAAGGCATTGGT  1000
      ||||||||||||||||||||||||||||||||| ||||||| ||||  ||
seq2  ATATTTAAATTTTTTCCATTTCTCACATCTTCT-AGCAAAA-GCAT--GT  992

seq1  AATTTCTTCAATATATTCATCATGATTTTGTATGATAGTATACACATTTG  1050
       ||||| ||||||||||||||||||||    |||||||||||||||||||
seq2  -ATTTC-TCAATATATTCATCATGATT---GATGATAGTATACACATTTG  1037

seq1  TCTAAATTTTAGAGTTT  1067
      | |||  ||||||||||
seq2  T-TAA--TTTAGAGTTT  1051