BAC Information

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BAC

Clone NameB6Ng01-116H04
Chromosome15 (Build37)
Map Location 61,655,089 - 61,800,011
singlet/doubletdoublet
Overlap genenone
Upstream geneD330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3, LOC100040430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116H04.bB6Ng01-116H04.g
ACCDH921444DH921445
length1,1941,029
definitionDH921444|Mus musculus domesticus DNA, BAC clone: B6Ng01-116H04, 5' end.DH921445|Mus musculus domesticus DNA, BAC clone: B6Ng01-116H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,655,089 - 61,656,282)(61,798,982 - 61,800,011)
sequence
gaattcagtagaggtctggaggggagctcaaaatcatgttgcatatagaa
caattgaaagaatgacaggtgttcagtctggaaaactaagtccaaaagag
accaagccagctgtctgcaacatttgaaggactgtcatgaggataataca
ttcaactagtgctccaggacttaggctcaaaaaaagagacgtgacagatt
tcaatccaaactacaagggcagaagatgggtttcttggtagctgtgaagt
ggttgaaacattttttttttgaatatacaggaccaacataaaagtatgta
ttaaatgttctcccagattggttttaaatataagactgcatcattctttg
gtcacgtgacatgagctttttccaaaaggcagtaaccgtagctggtagga
ttttcagaaattgttgcagctatcgtatatatttttaaagaatgttctgg
atatgtaagctattgcaaagaggaatccctttcttgatagttttatttgc
tcattcatcatattcctcttgcctgccatattctagtgtacttgtctaag
tatagaggctttaaatgtttaaaatttcaaatttaaaaagtaatctctga
ttcaggggccttataatgcaaaggctggaggtaggtgataaatacgaatg
tcacactatgctaatgcttgcgaaggaaataacacagcaggaaaagaaaa
tggaatagagcagacaaggaagaatgtccccctggcatgttagtgaaaag
tctctaaaggaagacaatcagatgaaaatatgaatagaagtctggatggg
ctgccaagcaaaagatcactccaggcagaggggacagttaatccaagatt
tgatgatcagcaagtatcatgtagatggagcagaatatttaataaaaagt
gccataagtgatgtcgtttgaggcataattagtggcagaagtgcatgtca
actttgttgacctctgtagcagctgcggatttgctcttagcagacaagaa
ggctcagcgagagtcagagctaagaaatgaagtaatccaatgcgtgagtt
aaaataacagtcaaagaacaagccagaaggagatcatataagaagcaggt
gaacatacaagaaacactgttcataaatgagataaggcatgagggtggct
gaataagaagtggggaacatgatgtgaggtgggggggaatatgg
gaattcttcctgcatgggacaatgaattaggttctttattcttgcctata
atgaacgaggcacagtgagaccagagcgtaagcgttatcctactgcttcg
aaccagggcattaccattcctttactgtttaaggtcgacatgagactgtc
tgtcctatttttttttttaaagagagaagtccagattgtttattaatgtc
ttatcccaccacagccatttcctgaggtgggagtaatttgggctgtcaga
tttttttcttgaagtgtttgggtggcagaatggtactctcacttcagaag
taaataaataagcttcccttttcaatctgctcatctttctgcattttaac
tagagtttaaatcttgagtggagttggcatgaacaggtaattactaccaa
gacgaatggtgatggtgattattgtggcaatggttctttatttgaaattt
cagcggaaggaagatcatgtttatctcagtcagccccagaacttgaaaag
taggaggcccagattctccctccttctaaaataacaatttttttcctttt
tttaaaaattaggtattttcctcatttacatttcccaatgctatcccaaa
agtcccccatataccccccccccactcctctacccacccactcccccttt
ttggccctggcgttcccctgtactagggcatataaagtttgcaagtccaa
tgggcctctctttccagtgatgaccgactaggccatcttttgatacatat
gcagctagagacaagagctccggggtactggttagttcataatgttgttc
cacctatagggttgcagatccctttagctccatggatacttttctctagc
tcctccattaggggccgtgtgacccatcccaatagctgactgtgatcatc
tacttctgtgtttgctaagcccggcatagtctcacaggagacagctatta
tctggttcttacagcaaatccttgctagtgtatgcatggtgtcagcgttt
ggagctgaatatgggatggatccccggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_61655089_61656282
seq2: B6Ng01-116H04.b_45_1238

seq1  GAATTCAGTAGAGGTCTGGAGGGGAGCTCAAAATCATGTTGCATATAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGAGGTCTGGAGGGGAGCTCAAAATCATGTTGCATATAGAA  50

seq1  CAATTGAAAGAATGACAGGTGTTCAGTCTGGAAAACTAAGTCCAAAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAAAGAATGACAGGTGTTCAGTCTGGAAAACTAAGTCCAAAAGAG  100

seq1  ACCAAGCCAGCTGTCTGCAACATTTGAAGGACTGTCATGAGGATAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCAGCTGTCTGCAACATTTGAAGGACTGTCATGAGGATAATACA  150

seq1  TTCAACTAGTGCTCCAGGACTTAGGCTCAAAAAAAGAGACGTGACAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTAGTGCTCCAGGACTTAGGCTCAAAAAAAGAGACGTGACAGATT  200

seq1  TCAATCCAAACTACAAGGGCAGAAGATGGGTTTCTTGGTAGCTGTGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCAAACTACAAGGGCAGAAGATGGGTTTCTTGGTAGCTGTGAAGT  250

seq1  GGTTGAAACATTTTTTTTTTGAATATACAGGACCAACATAAAAGTATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAACATTTTTTTTTTGAATATACAGGACCAACATAAAAGTATGTA  300

seq1  TTAAATGTTCTCCCAGATTGGTTTTAAATATAAGACTGCATCATTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTCTCCCAGATTGGTTTTAAATATAAGACTGCATCATTCTTTG  350

seq1  GTCACGTGACATGAGCTTTTTCCAAAAGGCAGTAACCGTAGCTGGTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGTGACATGAGCTTTTTCCAAAAGGCAGTAACCGTAGCTGGTAGGA  400

seq1  TTTTCAGAAATTGTTGCAGCTATCGTATATATTTTTAAAGAATGTTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAAATTGTTGCAGCTATCGTATATATTTTTAAAGAATGTTCTGG  450

seq1  ATATGTAAGCTATTGCAAAGAGGAATCCCTTTCTTGATAGTTTTATTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGCTATTGCAAAGAGGAATCCCTTTCTTGATAGTTTTATTTGC  500

seq1  TCATTCATCATATTCCTCTTGCCTGCCATATTCTAGTGTACTTGTCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATCATATTCCTCTTGCCTGCCATATTCTAGTGTACTTGTCTAAG  550

seq1  TATAGAGGCTTTAAATGTTTAAAATTTCAAATTTAAAAAGTAATCTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGGCTTTAAATGTTTAAAATTTCAAATTTAAAAAGTAATCTCTGA  600

seq1  TTCAGGGGCCTTATAATGCAAAGGCTGGAGGTAGGTGATAAATACGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGCCTTATAATGCAAAGGCTGGAGGTAGGTGATAAATACGAATG  650

seq1  TCACACTATGCTAATGCTTGCGAAGGAAATAACACAGCAGGAAAAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTATGCTAATGCTTGCGAAGGAAATAACACAGCAGGAAAAGAAAA  700

seq1  TGGAATAGAGCAGACAAGGAAGAATGTCCCCCTGGCATGTTAGTGAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAGAGCAGACAAGGAAGAATGTCCCCCTGGCATGTTAGTGAAAAG  750

seq1  TCTCTAAAGGAAGACAATCAGATGAAAATATGAATAGAAGTCTGGATGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAAGGAAGACAATCAGATGAAAATATGAATAGAAGTCTGGATGGG  800

seq1  CTGCCAAGCAAAAGATCACTCCAGGCAGAGGGGACAGTTAATCCAAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGCAAAAGATCACTCCAGGCAGAGGGGACAGTTAATCCAAGATT  850

seq1  TGATGATCAGCAAGTATCATGTAGATGGAGCAGAATATTTAATAAAAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATCAGCAAGTATCATGTAGATGGAGCAGAATATTTAATAAAAAGT  900

seq1  GCCATAAGTGATGTCGTTTGAGGCATAATTAGTGGCAGAAGTGCATGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAGTGATGTCGTTTGAGGCATAATTAGTGGCAGAAGTGCATGTCA  950

seq1  ACTTTGTTGACCTCTGTAGCAGCTGCGGGATTTGCTCTTAGCAGGACAAG  1000
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  ACTTTGTTGACCTCTGTAGCAGCTGC-GGATTTGCTCTTAGCA-GACAAG  998

seq1  AAGGCTCAGCGAGAGTCAGAGCTAAGAAATGAAGTAATCCAATGCGTGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCAGCGAGAGTCAGAGCTAAGAAATGAAGTAATCCAATGCGTGAG  1048

seq1  TTTAAAATAACAGTCAGAGAACAAGCCAGAAGGAGATCCATAT-AGAAGC  1099
       ||||||||||||||| |||||||||||||||||||| ||||| ||||||
seq2  -TTAAAATAACAGTCAAAGAACAAGCCAGAAGGAGAT-CATATAAGAAGC  1096

seq1  AGGGTGAGCATTACAAG-AACACTG-TCATAGATGAGATAAGGCATGAGG  1147
      | ||||| || |||||| ||||||| ||||| ||||||||||||||||||
seq2  A-GGTGAACA-TACAAGAAACACTGTTCATAAATGAGATAAGGCATGAGG  1144

seq1  GTGGCTGAGTACAGAGTGGGAGCAATGATG---GGTGGGGGGGAATAAGG  1194
      |||||||| ||   ||||||    ||||||   |||||||||||||| ||
seq2  GTGGCTGAATAAGAAGTGGGGAACATGATGTGAGGTGGGGGGGAATATGG  1194

seq1: chr15_61798982_61800011
seq2: B6Ng01-116H04.g_67_1095 (reverse)

seq1  ATCCGGGGATCCATCCCATAATCAGCTTCCAAACGCTGACACCATTGCAT  50
      |||||||||||||||||||| ||||| ||||||||||||||||| |||||
seq2  ATCCGGGGATCCATCCCATATTCAGC-TCCAAACGCTGACACCA-TGCAT  48

seq1  ACACTAGCAAGATTTTGCTGTAAGGACCCAGAT-ATAGCTGTCTCTTGTG  99
      |||||||||||  |||||||||| || |||||| ||||||||||| ||||
seq2  ACACTAGCAAGGATTTGCTGTAA-GAACCAGATAATAGCTGTCTCCTGTG  97

seq1  AGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGATCACAGTCAGCT  149
      |||||||||| |||| |||||||||||||||| |||||||||||||||||
seq2  AGACTATGCC-GGGCTTAGCAAACACAGAAGTAGATGATCACAGTCAGCT  146

seq1  ATT-GGATGGGTCACACGGCCCCTAATGGAGGAGCTAGAG-AAAGTATCC  197
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTGGGATGGGTCACACGGCCCCTAATGGAGGAGCTAGAGAAAAGTATCC  196

seq1  ATGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACT  246

seq1  AACCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATG  296

seq1  GCCTAGTCGGTCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTCGGTCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTT  346

seq1  ATATGCCCTAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCCTAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGG  396

seq1  GTAGAGGAGTGGGGGGGGGGTATATGGGGGACTTTTGGGATAGCATTGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGAGTGGGGGGGGGGTATATGGGGGACTTTTGGGATAGCATTGGG  446

seq1  AAATGTAAATGAGGAAAATACCTAATTTTTAAAAAAAGGAAAAAAATTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAATGAGGAAAATACCTAATTTTTAAAAAAAGGAAAAAAATTGT  496

seq1  TATTTTAGAAGGAGGGAGAATCTGGGCCTCCTACTTTTCAAGTTCTGGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGAAGGAGGGAGAATCTGGGCCTCCTACTTTTCAAGTTCTGGGG  546

seq1  CTGACTGAGATAAACATGATCTTCCTTCCGCTGAAATTTCAAATAAAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGAGATAAACATGATCTTCCTTCCGCTGAAATTTCAAATAAAGAA  596

seq1  CCATTGCCACAATAATCACCATCACCATTCGTCTTGGTAGTAATTACCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCCACAATAATCACCATCACCATTCGTCTTGGTAGTAATTACCTG  646

seq1  TTCATGCCAACTCCACTCAAGATTTAAACTCTAGTTAAAATGCAGAAAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCCAACTCCACTCAAGATTTAAACTCTAGTTAAAATGCAGAAAGA  696

seq1  TGAGCAGATTGAAAAGGGAAGCTTATTTATTTACTTCTGAAGTGAGAGTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGATTGAAAAGGGAAGCTTATTTATTTACTTCTGAAGTGAGAGTA  746

seq1  CCATTCTGCCACCCAAACACTTCAAGAAAAAAATCTGACAGCCCAAATTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGCCACCCAAACACTTCAAGAAAAAAATCTGACAGCCCAAATTA  796

seq1  CTCCCACCTCAGGAAATGGCTGTGGTGGGATAAGACATTAATAAACAATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCTCAGGAAATGGCTGTGGTGGGATAAGACATTAATAAACAATC  846

seq1  TGGACTTCTCTCTTTAAAAAAAAAAATAGGACAGACAGTCTCATGTCGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTCTCTCTTTAAAAAAAAAAATAGGACAGACAGTCTCATGTCGAC  896

seq1  CTTAAACAGTAAAGGAATGGTAATGCCCTGGTTCGAAGCAGTAGGATAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACAGTAAAGGAATGGTAATGCCCTGGTTCGAAGCAGTAGGATAAC  946

seq1  GCTTACGCTCTGGTCTCACTGTGCCTCGTTCATTATAGGCAAGAATAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACGCTCTGGTCTCACTGTGCCTCGTTCATTATAGGCAAGAATAAAG  996

seq1  AACCTAATTCATTGTCCCATGCAGGAAGAATTC  1030
      |||||||||||||||||||||||||||||||||
seq2  AACCTAATTCATTGTCCCATGCAGGAAGAATTC  1029