BAC Information

Click to search

BAC

Clone NameB6Ng01-116I12
Chromosome15 (Build37)
Map Location 21,490,987 - 21,492,142
singlet/doubletsinglet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116I12.bB6Ng01-116I12.g
ACCDH921505DH921506
length1,1441,214
definitionDH921505|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I12, 5' end.DH921506|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaaaactattatttcaaatgacagattagtataacttttgttt
tatatttgtgtatgtatacacatacacacacacatacacacacacacaca
cacacacacacacacacacacattatatagatgacctaaataactctttt
tctcttatattccaaggatatttgacttttactttgtagatctaggtagc
ttatctatcattttctaattttatttttttttcaagtagttatatggaaa
cacttttgtattctcaaagaaagatatgtttgatttgtaatagaaatatc
aacatttaaatagctgttgtaagaataatactttgaggaaagaataactt
aagaagtttttacactatttcaccaagaattgctatgaattatttctatg
ggaataataaatctttagcaccacaatagacttcacattgttttggaaat
tgtatcttcttatcactattagatgttacaaaaattatgattaattgtaa
atttatgttaaagtacttcatattttatttaaaatttttatgtgaatatg
agaaggatatagtaatgccaaggtgtcaaaatgtgctagatcaatctatg
ttctccaccagttttcaaggaaaacattcatcccaggtttttattaatta
ctatctggatatatttatttataatatttattattaattactatctggat
gtattttacagttaaaattacataattaacttttcacataaaaattgctt
ttgatcaatgtatacattttggtagcatacatgttttctaaggtctaaaa
gcaggaaacatttttacatgaggttattattctatttgatatcatctatc
attcctattttgtttgtacaatgaacttaaatttcaagttaagtatgaaa
ttcaaacactagcttgacaaaaccacttttgtccatgataaatcttactt
tacaaagtataaatattttgaatatatatttatatatatgcataagtgga
ataaattaaatgaagtgtattacattgacactgaatgtttcttttccaaa
ttgctatttataatatttatttttttttctaagaatacaagaagtacatg
atgatttttttttttgacctagtatcagtatttacttgtcacca
gaattcccctgagaggatataaaacccctctttaatatattttccttgtc
ctctcaacatgagattcctagggaaattctgtcctcccaacaaattttgt
ctatgccttgtttagtccctggaagctctgggaggtacaattagttgata
ttttgctttgtatggggatataatccccttcagcaccttcagccctttcc
ctatctcttccattggggtccctgagctcagtccgatagttggctgtaag
tatctaaatatgtcttagttaggatttggcagagcctatcagagaacagc
caaaccaggttcctgtcattaagtgctttttggcatcattaatattgtca
ggatttggtgtctgcatatggatttaatggatcacacagtgggctttctg
aatgccctttctttcagcctcttctatattttcatccttgcatttccttt
agacagggacaattttgggttaaaaaaatttagatgtgtcggtgcccccc
cctttctctgtgggccatgcttatctactagaggtggtctctacaggttc
gatctgtgtgctattgggtatttcagtcaatgtcatccctactgggtcct
gggagcgtctcacatccctgacattggaacttcctagaggctcctcaagt
caccaccccactctactacttatttctattcctttctctggacttctctc
ctatatcttcctatacctggtccaggccaccttttttttcctttcttctt
cccctctccaacccaggtccctccatccttctgcctcttgtgattatttt
gttccccgcttctaagaaggtacgaagcatccacactttggtgttccttc
ttattatgcttcatatgacttgtgaattgtatcatggataatatgaacat
ttgggcaaatattctacttttcagtgactacatacacatatatctttttt
gactgagttaccttactcaggatgatattttttagttccatccatttact
ttctagttcatgaaatcattttaaacctggagttggattccattgggtaa
agtacacatttcctgttccacttttcattgagaaacacctgggtgtgttc
cagtcttggctatatgaataggtgtataaatatgtagacagttgtctgtg
tatggtgggaagttggctatacatggtccaaacatgcggataggttcctg
gagaaattcaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21490987_21492142
seq2: B6Ng01-116I12.b_45_1188

seq1  GAATTCTAAAAACTATTATTTCAAATGACAGATTAGTATAACTTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAAACTATTATTTCAAATGACAGATTAGTATAACTTTTGTTT  50

seq1  TATATTTGTGTATGTATACACATACACACACACATACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGTGTATGTATACACATACACACACACATACACACACACACACA  100

seq1  CACACACACACACACACACACATTATATAGATGACCTAAATAACTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACATTATATAGATGACCTAAATAACTCTTTT  150

seq1  TCTCTTATATTCCAAGGATATTTGACTTTTACTTTGTAGATCTAGGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATATTCCAAGGATATTTGACTTTTACTTTGTAGATCTAGGTAGC  200

seq1  TTATCTATCATTTTCTAATTTTATTTTTTTTTCAAGTAGTTATATGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATCATTTTCTAATTTTATTTTTTTTTCAAGTAGTTATATGGAAA  250

seq1  CACTTTTGTATTCTCAAAGAAAGATATGTTTGATTTGTAATAGAAATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTGTATTCTCAAAGAAAGATATGTTTGATTTGTAATAGAAATATC  300

seq1  AACATTTAAATAGCTGTTGTAAGAATAATACTTTGAGGAAAGAATAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAAATAGCTGTTGTAAGAATAATACTTTGAGGAAAGAATAACTT  350

seq1  AAGAAGTTTTTACACTATTTCACCAAGAATTGCTATGAATTATTTCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTTTTACACTATTTCACCAAGAATTGCTATGAATTATTTCTATG  400

seq1  GGAATAATAAATCTTTAGCACCACAATAGACTTCACATTGTTTTGGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAATAAATCTTTAGCACCACAATAGACTTCACATTGTTTTGGAAAT  450

seq1  TGTATCTTCTTATCACTATTAGATGTTACAAAAATTATGATTAATTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTCTTATCACTATTAGATGTTACAAAAATTATGATTAATTGTAA  500

seq1  ATTTATGTTAAAGTACTTCATATTTTATTTAAAATTTTTATGTGAATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTTAAAGTACTTCATATTTTATTTAAAATTTTTATGTGAATATG  550

seq1  AGAAGGATATAGTAATGCCAAGGTGTCAAAATGTGCTAGATCAATCTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATATAGTAATGCCAAGGTGTCAAAATGTGCTAGATCAATCTATG  600

seq1  TTCTCCACCAGTTTTCAAGGAAAACATTCATCCCAGGTTTTTATTAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACCAGTTTTCAAGGAAAACATTCATCCCAGGTTTTTATTAATTA  650

seq1  CTATCTGGATATATTTATTTATAATATTTATTATTAATTACTATCTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGGATATATTTATTTATAATATTTATTATTAATTACTATCTGGAT  700

seq1  GTATTTTACAGTTAAAATTACATAATTAACTTTTCACATAAAAATTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTACAGTTAAAATTACATAATTAACTTTTCACATAAAAATTGCTT  750

seq1  TTGATCAATGTATACATTTTGGTAGCATACATGTTTTCTAAGGTCTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAATGTATACATTTTGGTAGCATACATGTTTTCTAAGGTCTAAAA  800

seq1  GCAGGAAACATTTTTACATGAGGTTATTATTCTA-TTGATATCATCTATC  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAGGAAACATTTTTACATGAGGTTATTATTCTATTTGATATCATCTATC  850

seq1  ATTCCTATTTTGTTTGTACAATGAACTT-AACTTCAAGTTAAGTATGAAA  898
      |||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  ATTCCTATTTTGTTTGTACAATGAACTTAAATTTCAAGTTAAGTATGAAA  900

seq1  TTCAAACACTAGCTTGACAAAACCACTTTTGTCCATGATAAATCTTACTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACACTAGCTTGACAAAACCACTTTTGTCCATGATAAATCTTACTT  950

seq1  TACAAAGTATAAATATTTTGAATTATAATATTTATATATATGCATAAGTG  998
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  TACAAAGTATAAATATTTTGAA-TAT-ATATTTATATATATGCATAAGTG  998

seq1  GAAATAAATTAAAATGAAGTGTATTACATTGACAACTGTATGTTTCTTTT  1048
      | |||||||| |||||||||||||||||||||| |||| |||||||||||
seq2  G-AATAAATT-AAATGAAGTGTATTACATTGAC-ACTGAATGTTTCTTTT  1045

seq1  CCAAATTTGCTATTTATTAATATTTA-TTATTTTTCTAAGAATACAAGAG  1097
      ||||| |||||||||| ||||||||| || ||||||||||||||||||| 
seq2  CCAAA-TTGCTATTTA-TAATATTTATTTTTTTTTCTAAGAATACAAGAA  1093

seq1  TAACATGAATGATTTTTTTTTTTATGAACCTAGTAGTCAGTATATTTAAC  1147
        ||||| |||||||||||||||    |||||||| ||||||   || ||
seq2  GTACATG-ATGATTTTTTTTTTT---GACCTAGTA-TCAGTA---TTTAC  1135

seq1  TTGTCACCA  1156
      |||||||||
seq2  TTGTCACCA  1144