BAC Information

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BAC

Clone NameB6Ng01-116L07
Chromosome15 (Build37)
Map Location 29,470,501 - 29,619,343
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116L07.bB6Ng01-116L07.g
ACCDH921637DH921638
length1,0921,150
definitionDH921637|Mus musculus domesticus DNA, BAC clone: B6Ng01-116L07, 5' end.DH921638|Mus musculus domesticus DNA, BAC clone: B6Ng01-116L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,470,501 - 29,471,602)(29,618,168 - 29,619,343)
sequence
gaattcagtaaattaaaatttctagtatgttaaagtcatgatcacatagg
caaagtatatactttttataaatagagtacatttctcatatgcatttatg
taaagtaaaaatagtgaaataatttactcagttcttacttgaatcacaca
attctctaagcactaaggcaatccataaagtttttgcctcaaaacataca
caacaaggcccctggaatgtacatagcagacacgtggagcttggtctcca
ttgggtctctcaacaattggaatgaggcagtccctaaagctgtaggctga
ctatggtatccattcctcatcaaagctgtcttctctgcctgagtggtaga
ggatgtgcctagtgtgacagagacgtgaggcagccaagagggaggatgtg
agatggactctgcgagagggaactggagaaggagcagcatttgggatgtg
aatgaatgaatgaaaaaataaatttaaataaataaatgaaaatacacaaa
accttgcagtaattgtatagactactcctagcataactcatataagagtt
ttgaacaaaggctgattatatatatatttaatcagtctacagtagttttc
ttaaccaatcatatataaaattgtagtctcagttagatcacatcattaat
tttcctttgaactctatttatttatttatttatttatttatttatttatt
tatttacatcccaaatactgcttccctcctcgtatcgcctccacagattt
tttttttattgctctccttcacctctgagagggagtgcccactcccctgt
atcctagtaccctggtaggtcaaatctctgtaggattaagagcatcctcc
aacccttctcacaacttttacataagagttcccaaccttcgtccaacatt
tggctgtgggtttctgcatctgtctcagtcatctgctggatagacagtta
tgctaggcttctgttttgcaagcatagtggtatcattatagtgccaagga
ttgagtttctcatagaatgggtctcaagttggaccagttttagtgcattc
cctcatctcgttcatctttgtccttgcattccttcatctagg
gaattcagtcttccactagcctttggatgaagatgtaaaactctcagcac
tgcctgctccatgcctgcctggatactgccatgctcccaccttgaagata
atggactgaacctctgaacctgtaagccagccacaattaaatgttgtttt
ttataagagttgccttggtcatggtatctgttcacagcagtaaaacccca
actaaggcaaatgtcatgtccatattgaaacaagatgtgaggacagagaa
attagaatttggatgacaaatgggtaacctttacacaggcacaaagaaat
attatgcttacaaatacttggtaagcaggaggtaaatcttagatccagtt
aactcacagagacacaggagtttgagacaacacagagaggtgtatggtaa
tttgccatattcaccctacatttcattcttatagtattcaactacagaag
tccctggtacaagatcagaaaaacatgccctttcagtgggcaggcacatt
tttatgaagcagtgtaggcaaacaaccagatattaatctaagggaaaagg
acccagtgacatttaagtattatattcgttaatatcacatgcacagtaat
ttcttaaagaaaaaaaataagcattgggttctgtgtgagaataaggagtt
cagaatattaacaaatcatcaagacagtggtaagtgatcataaaagaagg
aaaacatcactgtgttctcagatgactgaacctactctttgtgggggttt
taacgtttgcacgtgttgctatttgactctgaaatgtccccaaaccccag
tatgctgttcggagtgcttgctctcaagctgctattgctattgaggacta
tgtgcaacaattttatcactgttgttttgcttttgaagttcataccagat
cttcagcccatgtagttcttgtctgccattaagtgaatagtgaatgagat
gacactacatctctcttggcaacttcccttgaggaaattatgaccttcat
gtggtgtaataggataatagagacaggtgacaagatgtcaagcacatatt
tgtggagaagaatggaactaatgactaggattaagtactgtgatatgctt
gacattcatggaaaacgtagggctgagccttgaaagccagtagtctctca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29470501_29471602
seq2: B6Ng01-116L07.b_45_1136

seq1  GAATTCAGTAAATTAAAATTTCTAGTATGTTAAAGTCATGATCACATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAATTAAAATTTCTAGTATGTTAAAGTCATGATCACATAGG  50

seq1  CAAAGTATATACTTTTTATAAATAGAGTACATTTCTCATATGCATTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATATACTTTTTATAAATAGAGTACATTTCTCATATGCATTTATG  100

seq1  TAAAGTAAAAATAGTGAAATAATTTACTCAGTTCTTACTTGAATCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAAAAATAGTGAAATAATTTACTCAGTTCTTACTTGAATCACACA  150

seq1  ATTCTCTAAGCACTAAGGCAATCCATAAAGTTTTTGCCTCAAAACATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAAGCACTAAGGCAATCCATAAAGTTTTTGCCTCAAAACATACA  200

seq1  CAACAAGGCCCCTGGAATGTACATAGCAGACACGTGGAGCTTGGTCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGCCCCTGGAATGTACATAGCAGACACGTGGAGCTTGGTCTCCA  250

seq1  TTGGGTCTCTCAACAATTGGAATGAGGCAGTCCCTAAAGCTGTAGGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTCTCAACAATTGGAATGAGGCAGTCCCTAAAGCTGTAGGCTGA  300

seq1  CTATGGTATCCATTCCTCATCAAAGCTGTCTTCTCTGCCTGAGTGGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTATCCATTCCTCATCAAAGCTGTCTTCTCTGCCTGAGTGGTAGA  350

seq1  GGATGTGCCTAGTGTGACAGAGACGTGAGGCAGCCAAGAGGGAGGATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGCCTAGTGTGACAGAGACGTGAGGCAGCCAAGAGGGAGGATGTG  400

seq1  AGATGGACTCTGCGAGAGGGAACTGGAGAAGGAGCAGCATTTGGGATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACTCTGCGAGAGGGAACTGGAGAAGGAGCAGCATTTGGGATGTG  450

seq1  AATGAATGAATGAAAAAATAAATTTAAATAAATAAATGAAAATACACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAATGAAAAAATAAATTTAAATAAATAAATGAAAATACACAAA  500

seq1  ACCTTGCAGTAATTGTATAGACTACTCCTAGCATAACTCATATAAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCAGTAATTGTATAGACTACTCCTAGCATAACTCATATAAGAGTT  550

seq1  TTGAACAAAGGCTGATTATATATATATTTAATCAGTCTACAGTAGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAAAGGCTGATTATATATATATTTAATCAGTCTACAGTAGTTTTC  600

seq1  TTAACCAATCATATATAAAATTGTAGTCTCAGTTAGATCACATCATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAATCATATATAAAATTGTAGTCTCAGTTAGATCACATCATTAAT  650

seq1  TTTCCTTTGAACTCTATTTATTTATTTATTTATTTATTTATTTATTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGAACTCTATTTATTTATTTATTTATTTATTTATTTATTTATT  700

seq1  TATTTACATCCCAAATACTGCTTCCCTCCTCGTATCGCCTCCACAGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATCCCAAATACTGCTTCCCTCCTCGTATCGCCTCCACAGATTT  750

seq1  TTTTTTTATTGCTCTCCTTCACCTCTGAGAGGGAGTGCCCACTCCCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTGCTCTCCTTCACCTCTGAGAGGGAGTGCCCACTCCCCTGT  800

seq1  ATCCTAGTACCCTGGTAGGTCAAATCTCTGTAGGATTAAGAGCATCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGTACCCTGGTAGGTCAAATCTCTGTAGGATTAAGAGCATCCTCC  850

seq1  AACCCTTCTCACAACTTTTACATAAGAGTTCCCAACCTTCGTCCAACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCTCACAACTTTTACATAAGAGTTCCCAACCTTCGTCCAACATT  900

seq1  TGGCTGTGGGTTTCTGCATCTGTCTCAGTCATCTGCTGGATAGACAGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGGGTTTCTGCATCTGTCTCAGTCATCTGCTGGATAGACAGTTA  950

seq1  TGCTAGGCTTCTG-TTTGCAAGCATAGTGGTATCATTAATAGTGCCAAGG  999
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TGCTAGGCTTCTGTTTTGCAAGCATAGTGGTATCATT-ATAGTGCCAAGG  999

seq1  ATTGAAGTTTCCTCATAGAATGGGTCTCAAGTTGGACCAGTTCTTAGTTG  1049
      |||| ||||| ||||||||||||||||||||||||||||||| |||||  
seq2  ATTG-AGTTT-CTCATAGAATGGGTCTCAAGTTGGACCAGTT-TTAGT--  1044

seq1  GCCATTCCCTCAATCTCGGTTTCATCTTTGTCCCTGCATTTCTTCAATCT  1099
        ||||||||| ||||||  ||||||||||||| |||||| |||| ||||
seq2  -GCATTCCCTC-ATCTCG--TTCATCTTTGTCCTTGCATTCCTTC-ATCT  1089

seq1  AGG  1102
      |||
seq2  AGG  1092

seq1: chr15_29618168_29619343
seq2: B6Ng01-116L07.g_68_1217 (reverse)

seq1  TGAGA-ACTACTGAGCTTTCCAAGGCATCAGCCCTACTGTTTTTCCAATG  49
      ||||| ||||||| ||||| |||||| |||||||||| |||||  | |||
seq2  TGAGAGACTACTG-GCTTT-CAAGGC-TCAGCCCTAC-GTTTT--CCATG  44

seq1  AATGTCAGGCATAATCACAGTACTTTAAATTCCTAGTTCATTATGTTCCA  99
      ||||||| |||| ||||||||||||   | |||||| |||||| ||||||
seq2  AATGTCAAGCAT-ATCACAGTACTT---AATCCTAG-TCATTA-GTTCCA  88

seq1  TCTCTCTCCACAAATATGTGCCTTTGACATTCTTTGTCACTCTGTTCTTC  149
      |   |||||||||||||||||  |||||||   ||||||| ||||   ||
seq2  TTCTTCTCCACAAATATGTGC--TTGACAT--CTTGTCAC-CTGT--CTC  131

seq1  TATTTATCCCTATTACACCAACATGTAGGGTCATAATTTCCCTCAAGGGA  199
      || |||| ||||||||||| ||||| | ||||||||||| ||||||||||
seq2  TA-TTAT-CCTATTACACC-ACATG-AAGGTCATAATTT-CCTCAAGGGA  176

seq1  AGGTGGCCAAGAGAGATGTAGTTGTCATTCTCATTCACTATTCACTTAAT  249
      | || |||||||||||||||| ||||| ||||||||||||||||||||||
seq2  A-GTTGCCAAGAGAGATGTAG-TGTCA-TCTCATTCACTATTCACTTAAT  223

seq1  GGCAGACAAGAACTACATGGGCTGAAGATCTGGTATGAACTTCAAAAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACAAGAACTACATGGGCTGAAGATCTGGTATGAACTTCAAAAGCA  273

seq1  AAACAACAGTGATAAAATTGTTGCACATAGTCCTCAATAGCAATAGCAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAGTGATAAAATTGTTGCACATAGTCCTCAATAGCAATAGCAGC  323

seq1  TTGAGAGCAAGCACTCCGAACAGCATACTGGGGTTTGGGGACATTTCAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGCAAGCACTCCGAACAGCATACTGGGGTTTGGGGACATTTCAGA  373

seq1  GTCAAATAGCAACACGTGCAAACGTTAAAACCCCCACAAAGAGTAGGTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATAGCAACACGTGCAAACGTTAAAACCCCCACAAAGAGTAGGTTC  423

seq1  AGTCATCTGAGAACACAGTGATGTTTTCCTTCTTTTATGATCACTTACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTGAGAACACAGTGATGTTTTCCTTCTTTTATGATCACTTACCA  473

seq1  CTGTCTTGATGATTTGTTAATATTCTGAACTCCTTATTCTCACACAGAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGATGATTTGTTAATATTCTGAACTCCTTATTCTCACACAGAAC  523

seq1  CCAATGCTTATTTTTTTTCTTTAAGAAATTACTGTGCATGTGATATTAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCTTATTTTTTTTCTTTAAGAAATTACTGTGCATGTGATATTAAC  573

seq1  GAATATAATACTTAAATGTCACTGGGTCCTTTTCCCTTAGATTAATATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAATACTTAAATGTCACTGGGTCCTTTTCCCTTAGATTAATATCT  623

seq1  GGTTGTTTGCCTACACTGCTTCATAAAAATGTGCCTGCCCACTGAAAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTGCCTACACTGCTTCATAAAAATGTGCCTGCCCACTGAAAGGG  673

seq1  CATGTTTTTCTGATCTTGTACCAGGGACTTCTGTAGTTGAATACTATAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTCTGATCTTGTACCAGGGACTTCTGTAGTTGAATACTATAAG  723

seq1  AATGAAATGTAGGGTGAATATGGCAAATTACCATACACCTCTCTGTGTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGTAGGGTGAATATGGCAAATTACCATACACCTCTCTGTGTTG  773

seq1  TCTCAAACTCCTGTGTCTCTGTGAGTTAACTGGATCTAAGATTTACCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACTCCTGTGTCTCTGTGAGTTAACTGGATCTAAGATTTACCTCC  823

seq1  TGCTTACCAAGTATTTGTAAGCATAATATTTCTTTGTGCCTGTGTAAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACCAAGTATTTGTAAGCATAATATTTCTTTGTGCCTGTGTAAAGG  873

seq1  TTACCCATTTGTCATCCAAATTCTAATTTCTCTGTCCTCACATCTTGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCATTTGTCATCCAAATTCTAATTTCTCTGTCCTCACATCTTGTTT  923

seq1  CAATATGGACATGACATTTGCCTTAGTTGGGGTTTTACTGCTGTGAACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGGACATGACATTTGCCTTAGTTGGGGTTTTACTGCTGTGAACAG  973

seq1  ATACCATGACCAAGGCAACTCTTATAAAAAACAACATTTAATTGTGGCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATGACCAAGGCAACTCTTATAAAAAACAACATTTAATTGTGGCTG  1023

seq1  GCTTACAGGTTCAGAGGTTCAGTCCATTATCTTCAAGGTGGGAGCATGGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGGTTCAGAGGTTCAGTCCATTATCTTCAAGGTGGGAGCATGGC  1073

seq1  AGTATCCAGGCAGGCATGGAGCAGGCAGTGCTGAGAGTTTTACATCTTCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCAGGCAGGCATGGAGCAGGCAGTGCTGAGAGTTTTACATCTTCA  1123

seq1  TCCAAAGGCTAGTGGAAGACTGAATTC  1176
      |||||||||||||||||||||||||||
seq2  TCCAAAGGCTAGTGGAAGACTGAATTC  1150