BAC Information

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BAC

Clone NameB6Ng01-116M01
Chromosome15 (Build37)
Map Location 77,062,747 - 77,109,770
singlet/doubletdoublet
Overlap geneRbm9
Upstream geneLOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6
Downstream geneLOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116M01.bB6Ng01-116M01.g
ACCDH921672DH921673
length1,1561,155
definitionDH921672|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M01, 5' end.DH921673|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,062,747 - 77,063,921)(77,108,602 - 77,109,770)
sequence
gaattcaatgtagttacttaatagcctagttctcttctgggcacttggat
tttcattcatactaaagaaaagaggaatgttcattgatggagcttcatgg
aaaaagaataaaatttccacttaatggcagccacatcaaagatataatta
cattcaaaagcatggtcatgtattcacagagtcaaagtttatactccctc
caaaacaatgagaagtagggtcaatttaagcttatacaggaccattgtct
cttgtccatcataccccattccctcccaagatctagcatactgactaaca
catggtaggcacctaaaagaatatttaagcaaggggctggagagatggct
cagcagttaagagcactgactgctcttccagaggtcctgagttcaattcc
cagcaatcacatggtggctcacaaccatctgtaatggaactcaatgccct
ctctggtgtgtctgaagacagctacaatgtattcgtatacataaattaaa
taaataaataaataaatctttaaaaaaaagaatatttaagcaaatgaatg
gaattgatcttacataagctagtgatcctaagttattttctatacctata
attctttggacacttaaatatttatagtctcctcaaaaaaaaaaaaaaac
cctctagtcagtattagagataactgcctcaaaagttatggatatcaaaa
acaaaaatcttggtaaaggatgaagactgagatttccaagtgagtgtgac
actagcctaaggccaggcacatttgcttctctgtaagggtgagttctcct
tcctccacatccatttctttgtgtatgtgtgctgctgggaagtaacccag
ggccttacatgtattaggtaagcattttaccactgagctacatccagccc
atttacatttatttaaataaaacctctggattccaagagagagtggggca
aggactagacatgtgggtcaataaagtatagctaaagggtgcatgtgtgt
gtgtgtgtgtatgtgtgtgtatgttaaagcctcacaattatactaaataa
tgtttttaaggatgcaaggatgtccagggcagatgaattgccattttagg
aatgctgatgaacaatgatgtccatgtgaggcttaggtcatgccatatac
tagtta
gaattcaccccctcctcccactctcaccagatgggggatcatgggtgaca
cactgaattcaccccctcctcccgctctcaccagatgggatcatgggtga
cacactgaattcaccccttcctcctgctctcatcagatgggggatcatgg
gtgacacactgaatccaccccctcctcccgctctcaccagatgggatcat
gggtgacacactgaatttaccccctcctcccgctctcactgcagttgatc
tcactgcagctgtttccagctggcttctgcgttttgcccagggcccttgg
gatggctgcagtgactaacacagctgggctttttcctgtcatggtctgaa
tgtagaaacgatggaggaggcggcaaagggtgagttgggtacactatagt
ggattttttagtgaggatcattgcctcttcaggtttgttagtctttcttt
aaattgaggatctaagaggtagcattcattggtaggaggggagacaaagg
agccaattggagaaacccacatgtgcctcctctgctttttccctgtccac
atttgcctgatttatctatctttgaatcttttttatatgtgtggatattt
tgcctgtatgcttattaaccatgtgtatgcagtacctggaaggccagaga
acgtgcagcatttcccctggaataggagttaagaatagctgtcaatcatt
ttggtggtctggaagagcagcaagtgctcataactccaggccccactttt
tatttgagacagagtctctctgcatagttcctggctgtcctggaacactt
tataaactagatgtagaccagactagccttaaaactcacagagatccact
gggtacctctgcctcccaagtgctgggattataggtgtgataaaagccac
catgccttggcttccttccacttttacccctctgcttccttcagtgagtg
atggcagtggagcaccagttaataaacttcaggcagtgatttatgccttt
ggttttggtgcttgtaggagaatccatttccccaatcgtgcttcgtttct
ggcatagaaatggtagcactgcttcttcgctgagactgtggatgaggtac
cgaatcgagtaagaaagagtccttggggtttgaatttcatgattatgcca
ctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_77062747_77063921
seq2: B6Ng01-116M01.b_46_1201

seq1  GAATTCAATGTAGTTACTTAATAGCCTAGTTCTCTTCTGGGCACTTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTAGTTACTTAATAGCCTAGTTCTCTTCTGGGCACTTGGAT  50

seq1  TTTCATTCATACTAAAGAAAAGAGGAATGTTCATTGATGGAGCTTCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCATACTAAAGAAAAGAGGAATGTTCATTGATGGAGCTTCATGG  100

seq1  AAAAAGAATAAAATTTCCACTTAATGGCAGCCACATCAAAGATATAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAATAAAATTTCCACTTAATGGCAGCCACATCAAAGATATAATTA  150

seq1  CATTCAAAAGCATGGTCATGTATTCACAGAGTCAAAGTTTATACTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAAAGCATGGTCATGTATTCACAGAGTCAAAGTTTATACTCCCTC  200

seq1  CAAAACAATGAGAAGTAGGGTCAATTTAAGCTTATACAGGACCATTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAATGAGAAGTAGGGTCAATTTAAGCTTATACAGGACCATTGTCT  250

seq1  CTTGTCCATCATACCCCATTCCCTCCCAAGATCTAGCATACTGACTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCATCATACCCCATTCCCTCCCAAGATCTAGCATACTGACTAACA  300

seq1  CATGGTAGGCACCTAAAAGAATATTTAAGCAAGGGGCTGGAGAGATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGGCACCTAAAAGAATATTTAAGCAAGGGGCTGGAGAGATGGCT  350

seq1  CAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCC  400

seq1  CAGCAATCACATGGTGGCTCACAACCATCTGTAATGGAACTCAATGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCACATGGTGGCTCACAACCATCTGTAATGGAACTCAATGCCCT  450

seq1  CTCTGGTGTGTCTGAAGACAGCTACAATGTATTCGTATACATAAATTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGTGTCTGAAGACAGCTACAATGTATTCGTATACATAAATTAAA  500

seq1  TAAATAAATAAATAAATCTTTAAAAAAAAGAATATTTAAGCAAATGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATCTTTAAAAAAAAGAATATTTAAGCAAATGAATG  550

seq1  GAATTGATCTTACATAAGCTAGTGATCCTAAGTTATTTTCTATACCTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATCTTACATAAGCTAGTGATCCTAAGTTATTTTCTATACCTATA  600

seq1  ATTCTTTGGACACTTAAATATTTATAGTCTCCTCAAAAAAAAAAAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGGACACTTAAATATTTATAGTCTCCTCAAAAAAAAAAAAAAAC  650

seq1  CCTCTAGTCAGTATTAGAGATAACTGCCTCAAAAGTTATGGATATCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGTCAGTATTAGAGATAACTGCCTCAAAAGTTATGGATATCAAAA  700

seq1  ACAAAAATCTTGGTAAAGGATGAAGACTGAGATTTCCAAGTGAGTGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATCTTGGTAAAGGATGAAGACTGAGATTTCCAAGTGAGTGTGAC  750

seq1  ACTAGCCTAAGGCCAGGCACATTTGCTTCTCTGTAAGGGTGAGTTCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCTAAGGCCAGGCACATTTGCTTCTCTGTAAGGGTGAGTTCTCCT  800

seq1  TCCTCCACATCCATTTCTTTGTGTATGTGTGCTGCTGGGAAGTAACCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACATCCATTTCTTTGTGTATGTGTGCTGCTGGGAAGTAACCCAG  850

seq1  GGCCTTACATGTATTAGGTAAGCATTTTACCACTGAGCTACATCCAGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTACATGTATTAGGTAAGCATTTTACCACTGAGCTACATCCAGCCC  900

seq1  ATTTACATTTATTTAAATAAAACCTCTGGATTCCAAGAGAGAGTGGGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTTATTTAAATAAAACCTCTGGATTCCAAGAGAGAGTGGGGCA  950

seq1  AGGACTAGACATGTGGGTCAATAAAGTATAGCTAAAGGGTGCATGTGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGACATGTGGGTCAATAAAGTATAGCTAAAGGGTGCATGTGTGT  1000

seq1  GTGTGTGTGTATGTGTGTGTATGTATAAAAGCCTCACAATTATAACTAAA  1050
      |||||||||||||||||||||||  | |||||||||||||||| ||||||
seq2  GTGTGTGTGTATGTGTGTGTATG--TTAAAGCCTCACAATTAT-ACTAAA  1047

seq1  TAATGTTTTTAAAGGATGCAAAGAATGTCAAGGGCAGAAAGAATAGCCAT  1100
      |||||||||| |||||||| ||| ||||| ||||||| | |||| |||||
seq2  TAATGTTTTT-AAGGATGC-AAGGATGTCCAGGGCAG-ATGAATTGCCAT  1094

seq1  TTTAAGAAATGCTGATGAGACAATTGGATAGCCACATGTAGAAAGAGCTA  1150
      ||| || ||||||||||| |||||  |||  |||  ||     || ||| 
seq2  TTT-AGGAATGCTGATGA-ACAAT--GATGTCCATGTG-----AG-GCTT  1134

seq1  AAGGCCCATGCCATATACTAAGTTA  1175
      |  |  ||||||||||||| |||||
seq2  A--GGTCATGCCATATACT-AGTTA  1156

seq1: chr15_77108602_77109770
seq2: B6Ng01-116M01.g_68_1222 (reverse)

seq1  GAAAGTGGCATAATACATGAAATACCAAACCCCCAAAGGACTCCTCTTCT  50
      |||||||||||||| ||||||||  ||||||||  |||||||| |  |  
seq2  GAAAGTGGCATAAT-CATGAAAT-TCAAACCCC--AAGGACTCTTTCTTA  46

seq1  CTCGACTCAGATACCTCATCCACAGGTTCCTCAGCTGAAGAAGACAGTGC  100
      ||||| || | ||||||||||||||    |||||| ||||||| ||||||
seq2  CTCGATTC-GGTACCTCATCCACAG---TCTCAGC-GAAGAAG-CAGTGC  90

seq1  TCACCTATCTACTGCCAGGAAAAGGAAGCACCGATGGGGGAAATGGATTC  150
      |  | | |||| ||||||  ||| |||||| |||| ||||||||||||||
seq2  TACCATTTCTA-TGCCAG--AAACGAAGCA-CGATTGGGGAAATGGATTC  136

seq1  TTCCTACAAGCACCAAAACCAAGGGCATAAATCACTGCCTG-AGTTTATT  199
       ||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  -TCCTACAAGCACCAAAACCAAAGGCATAAATCACTGCCTGAAGTTTATT  185

seq1  AACTGGTGCTTCCCACTGCCATCACTCACTGAAGGAAGCAGAGGGGTAAA  249
      ||||||||||  ||||||||||||||||||||||||||||||||||| ||
seq2  AACTGGTGCT--CCACTGCCATCACTCACTGAAGGAAGCAGAGGGGT-AA  232

seq1  AAGTGG-AGGAAGCCAA-GCATGGTGGCTTTAATCACACCTATAATCCCA  297
      |||||| |||||||||| ||||||||||||| ||||||||||||||||||
seq2  AAGTGGAAGGAAGCCAAGGCATGGTGGCTTTTATCACACCTATAATCCCA  282

seq1  GCACTTGGGAGGCAGAGGTACCCAGTGGATCTCTGTGAGTTTTAAGGCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGGTACCCAGTGGATCTCTGTGAGTTTTAAGGCTA  332

seq1  GTCTGGTCTACATCTAGTTTATAAAGTGTTCCAGGACAGCCAGG-ACTAT  396
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCTGGTCTACATCTAGTTTATAAAGTGTTCCAGGACAGCCAGGAACTAT  382

seq1  GCAGAGAGACTCTGTCTCAAATAAAAAGTGGGGCCTGGAGTTATGAGCAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGACTCTGTCTCAAATAAAAAGTGGGGCCTGGAGTTATGAGCAC  432

seq1  TTGCTGCTCTTCCAGACCACCAAAATGATTGACAGCTATTCTTAACTCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTCTTCCAGACCACCAAAATGATTGACAGCTATTCTTAACTCCT  482

seq1  ATTCCAGGGGAAATGCTGCACGTTCTCTGGCCTTCCAGGTACTGCATACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGGGAAATGCTGCACGTTCTCTGGCCTTCCAGGTACTGCATACA  532

seq1  CATGGTTAATAAGCATACAGGCAAAATATCCACACATATAAAAAAGATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTAATAAGCATACAGGCAAAATATCCACACATATAAAAAAGATTC  582

seq1  AAAGATAGATAAATCAGGCAAATGTGGACAGGGAAAAAGCAGAGGAGGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAGATAAATCAGGCAAATGTGGACAGGGAAAAAGCAGAGGAGGCA  632

seq1  CATGTGGGTTTCTCCAATTGGCTCCTTTGTCTCCCCTCCTACCAATGAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGGTTTCTCCAATTGGCTCCTTTGTCTCCCCTCCTACCAATGAAT  682

seq1  GCTACCTCTTAGATCCTCAATTTAAAGAAAGACTAACAAACCTGAAGAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTCTTAGATCCTCAATTTAAAGAAAGACTAACAAACCTGAAGAGG  732

seq1  CAATGATCCTCACTAAAAAATCCACTATAGTGTACCCAACTCACCCTTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATCCTCACTAAAAAATCCACTATAGTGTACCCAACTCACCCTTTG  782

seq1  CCGCCTCCTCCATCGTTTCTACATTCAGACCATGACAGGAAAAAGCCCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCCTCCATCGTTTCTACATTCAGACCATGACAGGAAAAAGCCCAG  832

seq1  CTGTGTTAGTCACTGCAGCCATCCCAAGGGCCCTGGGCAAAACGCAGAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTAGTCACTGCAGCCATCCCAAGGGCCCTGGGCAAAACGCAGAAG  882

seq1  CCAGCTGGAAACAGCTGCAGTGAGATCAACTGCAGTGAGAGCGGGAGGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGAAACAGCTGCAGTGAGATCAACTGCAGTGAGAGCGGGAGGAG  932

seq1  GGGGTAAATTCAGTGTGTCACCCATGATCCCATCTGGTGAGAGCGGGAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAAATTCAGTGTGTCACCCATGATCCCATCTGGTGAGAGCGGGAGG  982

seq1  AGGGGGTGGATTCAGTGTGTCACCCATGATCCCCCATCTGATGAGAGCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGGATTCAGTGTGTCACCCATGATCCCCCATCTGATGAGAGCAG  1032

seq1  GAGGAAGGGGTGAATTCAGTGTGTCACCCATGATCCCATCTGGTGAGAGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGGGTGAATTCAGTGTGTCACCCATGATCCCATCTGGTGAGAGC  1082

seq1  GGGAGGAGGGGGTGAATTCAGTGTGTCACCCATGATCCCCCATCTGGTGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGGGGGTGAATTCAGTGTGTCACCCATGATCCCCCATCTGGTGA  1132

seq1  GAGTGGGAGGAGGGGGTGAATTC  1169
      |||||||||||||||||||||||
seq2  GAGTGGGAGGAGGGGGTGAATTC  1155