BAC Information

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BAC

Clone NameB6Ng01-116P09
Chromosome15 (Build37)
Map Location 18,749,137 - 18,765,560
singlet/doubletdoublet
Overlap geneCdh10
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneEG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116P09.bB6Ng01-116P09.g
ACCDH921827DH921828
length1,1251,214
definitionDH921827|Mus musculus domesticus DNA, BAC clone: B6Ng01-116P09, 5' end.DH921828|Mus musculus domesticus DNA, BAC clone: B6Ng01-116P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,749,137 - 18,750,272)(18,764,332 - 18,765,560)
sequence
gaattcattcattctgaacaattgctgaaaatgtttacggagtgtcatta
gtcttgctcgttcctgtttacctctgtctcggatagcagcttagcaggta
gcactgtttgctgtgaactctagcttcagctaacattactttgcattcca
tatgaacgggttcactcctcacttatccctggtcatagttcgttatgcat
tcagtatagagagaaatgacagccagaggacagatgccttgaagctgtga
gtggtcacatctacaggaagacagtcgattgacattcatcagaaacagga
tggatataattcctatgctcaccttttgtatgagtaggaagtatcagggg
gtaaaatttaaaaggggggggggattaaatgcatgcagtcagcagttgca
gcatttattgtctctgctgcaataaaatccatattttatgtggtgttaaa
ttaatgcagcatgttggcatgtctaaatggatgtcctcaacaagtaacta
ttatagcactgtaagtatgggccaaagcagtagtcggcaaatgtttccat
gccaccacaataaaaaccaagtacctctttcccatgtacaggggagaggc
tataggtataatcaaagacaaacatttaaaactgacctatcatctcttgc
tttcaaaaagaaaaaagaaaaaaaaaaaggaaagccgatctatttcctac
aattgtggtccttcattccagtaaaagctcctattatccaaagcggcaca
tgcattgctactctttggagatgcttcctttaaaaaaatatatctaattt
tttttttctcttgtaagatctattttaaaaataatctgtccctgtgatgc
tgacaactgttatactttcaatgcatatgttaggagactctctcccttct
caacacccccccctgccttttcttttaaacgtagttacagagcttcactg
tggtgaataacacttggcaagagggtgctcatttttagtctggtttggtg
aggattttattagtggactttcatgaaaacatatgtcattgacagagctg
catgttcatttttagttacagaaggagggaaatgatgaagagcccgtgtt
ctaaagaattgcacatgatagttgc
gaattccaattatcacacaaatgagtaaagtcccaatcaatgatctactt
taaagaataagtaatttctgttttagatgtgtgttgcaagtggcctttaa
aattatttcagaatctgtgagcttacatataaaaacatatcagtactacc
tactcattattgataagatgattttcacaatcaagtcacccagcaaggac
tcttaagtataggaagctggatcatatgccaaagttatgatgttataagt
gtaggatgatgtcagtggatcaaataagatacagttattttaaagagcta
agtcaggaggctgagaaaacctacttaataatttctctaattaaaaaatg
gctttatacctgggcagatagctgggcagtggtggcactcaggagacaga
tgcaggtggatctctgagttcaaggccagcctggtctacagagtgacttc
cagggatatgcagaaaacatgtatcacataaaaacatgcttttatcttaa
aagggacaggagaagctgtcagtggtgcagcaataagaaaattatgtctt
tgtgtcttcccatgatcccttaaactttcaatgttaagtatcaaatagaa
aactatattatgcattttatccatgtgatacatatatctcattaccacac
ctttgctaatatgttaacagagtgagttaagtgttagagtttcagataac
agccagagtaacccaaactctgaaagaacattgaaaatgataacgctaca
cacacacacacacgaatataaatgattcaaggatgacaatgactaacaac
agaaaggagttataaatagacgggtatgactcttttgggagccacaaggc
cactttatatgtagatctcaaagatcatcgtgaaataacatttgaaggca
acttgtttccattataaattctgggataaagtgacaacaaaaagaaaaag
caagtagattaaaatacttaaaatggtaaaggcctcgttatcttaagaac
tgaaaacagatatttctgcttatattcctggagattgttgatggcagaga
gccaagaacttatattaactcaaagaagaagaaaaaatttgaaatgctca
gcagcagataattgccagaatattagggaatgtgtgcagtcacaaaatcc
cttcaggaattagaaagccttacatccgagcatgtcttagggtgtggctt
tttcacattcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18749137_18750272
seq2: B6Ng01-116P09.b_49_1173

seq1  GAATTCATTCATTCTGAACAATTGCTGAAAATGTTTACGGAGTGTCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTCTGAACAATTGCTGAAAATGTTTACGGAGTGTCATTA  50

seq1  GTCTTGCTCGTTCCTGTTTACCTCTGTCTCGGATAGCAGCTTAGCAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTCGTTCCTGTTTACCTCTGTCTCGGATAGCAGCTTAGCAGGTA  100

seq1  GCACTGTTTGCTGTGAACTCTAGCTTCAGCTAACATTACTTTGCATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTTTGCTGTGAACTCTAGCTTCAGCTAACATTACTTTGCATTCCA  150

seq1  TATGAACGGGTTCACTCCTCACTTATCCCTGGTCATAGTTCGTTATGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACGGGTTCACTCCTCACTTATCCCTGGTCATAGTTCGTTATGCAT  200

seq1  TCAGTATAGAGAGAAATGACAGCCAGAGGACAGATGCCTTGAAGCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATAGAGAGAAATGACAGCCAGAGGACAGATGCCTTGAAGCTGTGA  250

seq1  GTGGTCACATCTACAGGAAGACAGTCGATTGACATTCATCAGAAACAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCACATCTACAGGAAGACAGTCGATTGACATTCATCAGAAACAGGA  300

seq1  TGGATATAATTCCTATGCTCACCTTTTGTATGAGTAGGAAGTATCAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATAATTCCTATGCTCACCTTTTGTATGAGTAGGAAGTATCAGGGG  350

seq1  GTAAAATTTAAAAGGGGGGGGGGATTAAATGCATGCAGTCAGCAGTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTAAAAGGGGGGGGGGATTAAATGCATGCAGTCAGCAGTTGCA  400

seq1  GCATTTATTGTCTCTGCTGCAATAAAATCCATATTTTATGTGGTGTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATTGTCTCTGCTGCAATAAAATCCATATTTTATGTGGTGTTAAA  450

seq1  TTAATGCAGCATGTTGGCATGTCTAAATGGATGTCCTCAACAAGTAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCAGCATGTTGGCATGTCTAAATGGATGTCCTCAACAAGTAACTA  500

seq1  TTATAGCACTGTAAGTATGGGCCAAAGCAGTAGTCGGCAAATGTTTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCACTGTAAGTATGGGCCAAAGCAGTAGTCGGCAAATGTTTCCAT  550

seq1  GCCACCACAATAAAAACCAAGTACCTCTTTCCCATGTACAGGGGAGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACAATAAAAACCAAGTACCTCTTTCCCATGTACAGGGGAGAGGC  600

seq1  TATAGGTATAATCAAAGACAAACATTTAAAACTGACCTATCATCTCTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTATAATCAAAGACAAACATTTAAAACTGACCTATCATCTCTTGC  650

seq1  TTTCAAAAAGAAAAAAGAAAAAAAAAAAGGAAAGCCGATCTATTTCCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAAGAAAAAAGAAAAAAAAAAAGGAAAGCCGATCTATTTCCTAC  700

seq1  AATTGTGGTCCTTCATTCCAGTAAAAGCTCCTATTATCCAAAGCGGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGTCCTTCATTCCAGTAAAAGCTCCTATTATCCAAAGCGGCACA  750

seq1  TGCATTGCTACTCTTTGGAGATGCTTCCTTTAAAAAAATATATCTAA-TT  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCATTGCTACTCTTTGGAGATGCTTCCTTTAAAAAAATATATCTAATTT  800

seq1  TTTTTTTCTCTTGTAAGATCTATTTTAAAAATAATCTGTCCCTGTGATGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCTTGTAAGATCTATTTTAAAAATAATCTGTCCCTGTGATGC  850

seq1  TGACAACTGTTATAC-TTCAATGCATATGTTAGGAGACTCTCTCCCTTCT  898
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGACAACTGTTATACTTTCAATGCATATGTTAGGAGACTCTCTCCCTTCT  900

seq1  CAACACCCCCCCCTGCCTTTCTTTTAAAACGTAGTTACAAGAGCTTCACT  948
      ||||||||||||||||||||  ||| |||||||||||| |||||||||||
seq2  CAACACCCCCCCCTGCCTTTTCTTTTAAACGTAGTTAC-AGAGCTTCACT  949

seq1  GTGGTGAATAACACTTGGCAAGAGGGTGCTCATTTTTTAGGTCTGGTATG  998
      |||||||||||||||||||||||||||||||||||||   ||||||| ||
seq2  GTGGTGAATAACACTTGGCAAGAGGGTGCTCATTTTT--AGTCTGGTTTG  997

seq1  GTGAGGATTTTTAATTAGTGGAACTTTCATGAAAACATTATGTCATTGAC  1048
      |||||||||||  |||||||| ||||||||||||||| ||||||||||||
seq2  GTGAGGATTTT--ATTAGTGG-ACTTTCATGAAAACA-TATGTCATTGAC  1043

seq1  AGAGCTGCATGTTCATTTTTAGTTACAGAGAGGAAGGGAAAGGAAGAGAG  1098
      ||||||||||||||||||||||||||||| ||| ||||||| || || ||
seq2  AGAGCTGCATGTTCATTTTTAGTTACAGA-AGG-AGGGAAATGATGA-AG  1090

seq1  AGCCCGTGTTCTAGAGAGATGGGCACATGATAAGTTGC  1136
      ||||||||||||| |||  |  ||||||||| ||||||
seq2  AGCCCGTGTTCTAAAGAATT--GCACATGAT-AGTTGC  1125

seq1: chr15_18764332_18765560
seq2: B6Ng01-116P09.g_69_1282 (reverse)

seq1  TCATGGAATAGTGAAACAGCCACACCCTAAG-CATGCTTCGGGGATTGTA  49
      |||| |||| |||||| |||||||||||||| ||||| ||||    ||| 
seq2  TCAT-GAAT-GTGAAAAAGCCACACCCTAAGACATGC-TCGG---ATGT-  43

seq1  AAAGCCTCTTCTAAAATCCCCTGAGAGGGGTTTTTGTGACTGCACACATC  99
       ||| || ||||  ||| ||    || ||| |||||||||||||||||| 
seq2  -AAGGCT-TTCT--AATTCC---TGAAGGGATTTTGTGACTGCACACAT-  85

seq1  TCCTGTATATTCCTGGCATTATTA-CTGCTTGCTTGAGCATTTCAAA-TT  147
      |||   ||||| ||||||  |||| |||| ||| ||||||||||||| ||
seq2  TCCCTAATATT-CTGGCA--ATTATCTGC-TGC-TGAGCATTTCAAATTT  130

seq1  TTTCTTCTTCCTTTTGAGTTATTATAGGTTCTTTGGCTCTCTTGCAATCA  197
      ||||||||||  ||||||||| |||| |||| ||||||||| ||| ||||
seq2  TTTCTTCTTC--TTTGAGTTAATATAAGTTC-TTGGCTCTC-TGCCATCA  176

seq1  ACACATCT-CAGG-ATATAAGCAGATATACTTGTTTTCAGTTCTT-AGAT  244
      ||| |||| |||| ||||||||||| |||  |||||||||||||| ||||
seq2  ACA-ATCTCCAGGAATATAAGCAGAAATATCTGTTTTCAGTTCTTAAGAT  225

seq1  AACGA-GCCTTTACCATTTTAAGTATTTTAATCTACTTGC-TTTTCTTTT  292
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  AACGAGGCCTTTACCATTTTAAGTATTTTAATCTACTTGCTTTTTCTTTT  275

seq1  TGTTGTCACTTTATCCCAG-ATTTATATTGTAAACAAGTTGCCTTCAAAT  341
      ||||||||||||||||||| ||||||| || |||||||||||||||||||
seq2  TGTTGTCACTTTATCCCAGAATTTATAATGGAAACAAGTTGCCTTCAAAT  325

seq1  GTTATTTCACGATGATCTTTGAGATCTACATATAAAGTGGCCTTGTGGCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCACGATGATCTTTGAGATCTACATATAAAGTGGCCTTGTGGCT  375

seq1  CCC-AAAGAGTCATACCTGTCTATTTATAACTCCTTTCTGTTGTTAGTCA  440
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCCAAAAGAGTCATACCCGTCTATTTATAACTCCTTTCTGTTGTTAGTCA  425

seq1  TTGTCATCCTTGAATCATTTATATTCGTGTGTGTGTGTGTGTAGCGTTAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCCTTGAATCATTTATATTCGTGTGTGTGTGTGTGTAGCGTTAT  475

seq1  CATTTTCAATGTTCTTTCAGAGTTTGGGTTACTCTGGCTGTTATCTGAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAATGTTCTTTCAGAGTTTGGGTTACTCTGGCTGTTATCTGAAA  525

seq1  CTCTAACACTTAACTCACTCTGTTAACATATTAGCAAAGGTGTGGTAATG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACACTTAACTCACTCTGTTAACATATTAGCAAAGGTGTGGTAATG  575

seq1  AGATATATGTATCACATGGATAAAATGCATAATATAGTTTTCTATTTGAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATGTATCACATGGATAAAATGCATAATATAGTTTTCTATTTGAT  625

seq1  ACTTAACATTGAAAGTTTAAGGGATCATGGGAAGACACAAAGACATAATT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACATTGAAAGTTTAAGGGATCATGGGAAGACACAAAGACATAATT  675

seq1  TTCTTATTGCTGCACCACTGACAGCTTCTCCTGTCCCTTTTAAGATAAAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTGCTGCACCACTGACAGCTTCTCCTGTCCCTTTTAAGATAAAA  725

seq1  GCATGTTTTTATGTGATACATGTTTTCTGCATATCCCTGGAAGTCACTCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTTTATGTGATACATGTTTTCTGCATATCCCTGGAAGTCACTCT  775

seq1  GTAGACCAGGCTGGCCTTGAACTCAGAGATCCACCTGCATCTGTCTCCTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTTGAACTCAGAGATCCACCTGCATCTGTCTCCTG  825

seq1  AGTGCCACCACTGCCCAGCTATCTGCCCAGGTATAAAGCCATTTTTTAAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCACCACTGCCCAGCTATCTGCCCAGGTATAAAGCCATTTTTTAAT  875

seq1  TAGAGAAATTATTAAGTAGGTTTTCTCAGCCTCCTGACTTAGCTCTTTAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATTATTAAGTAGGTTTTCTCAGCCTCCTGACTTAGCTCTTTAA  925

seq1  AATAACTGTATCTTATTTGATCCACTGACATCATCCTACACTTATAACAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGTATCTTATTTGATCCACTGACATCATCCTACACTTATAACAT  975

seq1  CATAACTTTGGCATATGATCCAGCTTCCTATACTTAAGAGTCCTTGCTGG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTTTGGCATATGATCCAGCTTCCTATACTTAAGAGTCCTTGCTGG  1025

seq1  GTGACTTGATTGTGAAAATCATCTTATCAATAATGAGTAGGTAGTACTGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTGATTGTGAAAATCATCTTATCAATAATGAGTAGGTAGTACTGA  1075

seq1  TATGTTTTTATATGTAAGCTCACAGATTCTGAAATAATTTTAAAGGCCAC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTATATGTAAGCTCACAGATTCTGAAATAATTTTAAAGGCCAC  1125

seq1  TTGCAACACACATCTAAAACAGAAATTACTTATTCTTTAAAGTAGATCAT  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACACACATCTAAAACAGAAATTACTTATTCTTTAAAGTAGATCAT  1175

seq1  TGATTGGGACTTTACTCATTTGTGTGATAATTGGAATTC  1229
      |||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGGACTTTACTCATTTGTGTGATAATTGGAATTC  1214