BAC Information

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BAC

Clone NameB6Ng01-119D22
Chromosome15 (Build37)
Map Location 4,257,701 - 4,258,977
singlet/doubletsinglet
Overlap genenone
Upstream geneGhr, LOC223278, Fbxo4, AW549877, LOC100039196, Oxct1
Downstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119D22.bB6Ng01-119D22.g
ACCDH923511DH923512
length1,1551,137
definitionDH923511|Mus musculus domesticus DNA, BAC clone: B6Ng01-119D22, 5' end.DH923512|Mus musculus domesticus DNA, BAC clone: B6Ng01-119D22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaagcctgaaagggaagggtttgatgacagaaggaggctattaa
atggtgagaaaatagaaacagatggtaaagtgagatgctgaataattgta
aaaagagaaaattgcagctaacgagagtgactgtggataattagctatgt
tatgcttcatgtttttattggtgaaatggagttatgcactgaaggatttc
tagttctagacatttatatttctgagggcctagagcgagggattgaggca
ggaagaagaattatgttaggtatcaagagtgtatgaaggctccagagttc
aatagagttcaagggcaggaatcgcatcctgcactgagtggtcctgggtc
atctccctacatagggatgaaatgaatgactgggccccatgaaagcttgc
ctaagccctgaagtggtcattggcactaattctgtctgaggaagacaaga
aaatacagaaatcacactttttttcattttaccaatggttggtgttttca
actgtcaaagatttagtcactttgtagataattttctactgtttggtaaa
tttaaaatattttcttttaggattgaacttttatgaacctttaagaaaat
gtttaagaaaaatatatatagttttttttccattttaatcactttatatg
ccataaactattaacagcctagaatctcctgagaatctcacagagggatt
atatagaccacattggtctgttaacatgtctgtggtgaattgtcttggtt
attaaatgatttaggaagacccagcccattgtgggcagcactattcctta
ggcagagagtcctgaacagtttaacagataagaaaggtagttaagcgtca
tggtcctctacccctgcgtggtgtatgactgtgggcccgagagcactctc
gaattaaaagtcctcttgcaatttgcagcaagaccatttctcatgagtga
tttggggtgtcacctcttctgagtcagacgtaggggagttctcacgttgt
gggtctttcatttggtgcatgggccgggaaacgcgacacccctcataccc
aggacaactttgagtatgagatccctctgtgtgtggccgacccaccagtg
tctctgtttgaagtggtgtttctgaacgtgcctgatggttggtggtttct
ctggt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccat
ggagagctagagaagtacccagagctaaagggatctgcaccctatagtga
cacatatgactaacagtaccctgagctctgactctagctgcatatgtatc
aagatgcctagtcgccatcactgcaagaagtcaatggaaccgcgacttgt
tgcggtacagacgcagtcaaggggggagatggtgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_4257701_4258977
seq2: B6Ng01-119D22.b_44_1198

seq1  GAATTCTAAGCCTGAAAGGGAAGGGTTTGATGACAGAAGGAGGCTATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGCCTGAAAGGGAAGGGTTTGATGACAGAAGGAGGCTATTAA  50

seq1  ATGGTGAGAAAATAGAAACAGATGGTAAAGTGAGATGCTGAATAATTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAGAAAATAGAAACAGATGGTAAAGTGAGATGCTGAATAATTGTA  100

seq1  AAAAGAGAAAATTGCAGCTAACGAGAGTGACTGTGGATAATTAGCTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAAATTGCAGCTAACGAGAGTGACTGTGGATAATTAGCTATGT  150

seq1  TATGCTTCATGTTTTTATTGGTGAAATGGAGTTATGCACTGAAGGATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCATGTTTTTATTGGTGAAATGGAGTTATGCACTGAAGGATTTC  200

seq1  TAGTTCTAGACATTTATATTTCTGAGGGCCTAGAGCGAGGGATTGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTAGACATTTATATTTCTGAGGGCCTAGAGCGAGGGATTGAGGCA  250

seq1  GGAAGAAGAATTATGTTAGGTATCAAGAGTGTATGAAGGCTCCAGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGAATTATGTTAGGTATCAAGAGTGTATGAAGGCTCCAGAGTTC  300

seq1  AATAGAGTTCAAGGGCAGGAATCGCATCCTGCACTGAGTGGTCCTGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTTCAAGGGCAGGAATCGCATCCTGCACTGAGTGGTCCTGGGTC  350

seq1  ATCTCCCTACATAGGGATGAAATGAATGACTGGGCCCCATGAAAGCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTACATAGGGATGAAATGAATGACTGGGCCCCATGAAAGCTTGC  400

seq1  CTAAGCCCTGAAGTGGTCATTGGCACTAATTCTGTCTGAGGAAGACAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCCTGAAGTGGTCATTGGCACTAATTCTGTCTGAGGAAGACAAGA  450

seq1  AAATACAGAAATCACACTTTTTTTCATTTTACCAATGGTTGGTGTTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGAAATCACACTTTTTTTCATTTTACCAATGGTTGGTGTTTTCA  500

seq1  ACTGTCAAAGATTTAGTCACTTTGTAGATAATTTTCTACTGTTTGGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAAAGATTTAGTCACTTTGTAGATAATTTTCTACTGTTTGGTAAA  550

seq1  TTTAAAATATTTTCTTTTAGGATTGAACTTTTATGAACCTTTAAGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATATTTTCTTTTAGGATTGAACTTTTATGAACCTTTAAGAAAAT  600

seq1  GTTTAAGAAAAATATATATAGTTTTTTTTCCATTTTAATCACTTTATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGAAAAATATATATAGTTTTTTTTCCATTTTAATCACTTTATATG  650

seq1  CCATAAACTATTAACAGCCTAGAATCTCCTGAGAATCTCACAGAGGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACTATTAACAGCCTAGAATCTCCTGAGAATCTCACAGAGGGATT  700

seq1  ATATAGACCACATTGGTCTGTTAACATGTCTGTGGTGAATTGTCTTGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACCACATTGGTCTGTTAACATGTCTGTGGTGAATTGTCTTGGTT  750

seq1  ATTAAATGATTTAGGAAGACCCAGCCCATTGTGGGCAGCACTATTCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGATTTAGGAAGACCCAGCCCATTGTGGGCAGCACTATTCCTTA  800

seq1  GGCAGAGAGTCCTGAACAGTTTAACAGATAAGAAAGGTAGTTAAGCGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGTCCTGAACAGTTTAACAGATAAGAAAGGTAGTTAAGCGTCA  850

seq1  TGGTCCTCTACCCCTGCGTGGTGTATGACTGTGGGCCCGAGAGCACTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTCTACCCCTGCGTGGTGTATGACTGTGGGCCCGAGAGCACTCTC  900

seq1  GAATTAAAAGTCCTCTTGCAATTTGCAGCAAGACCATTTCTCATGAGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAAGTCCTCTTGCAATTTGCAGCAAGACCATTTCTCATGAGTGA  950

seq1  TTTGGGGTGTCACCTCTTCTGAGTCAGAACGTAGGGGAGTTCTCACGTTG  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGGGGTGTCACCTCTTCTGAGTCAG-ACGTAGGGGAGTTCTCACGTTG  999

seq1  TGGGTCTTTCATTTGGTGCATGGGCCGGGAAACGCGACCACCCCTCATAC  1050
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGGTCTTTCATTTGGTGCATGGGCCGGGAAACGCGA-CACCCCTCATAC  1048

seq1  CCAAGAACCAACTTGGAGGTATGGAGATCCCCTCTTGTGTGTGTGCCGGC  1100
      ||| ||  |||||| || |||| ||||| ||||| |||||||| |||| |
seq2  CCAGGA--CAACTTTGA-GTAT-GAGAT-CCCTC-TGTGTGTG-GCCGAC  1091

seq1  CCACCAGTGTCTCTGTTTTGAGTGTGTGTTTTCTGAAACGTGCGCTTGTT  1150
      ||||||||||||||||||  |||| ||| |||||| |||||  || || |
seq2  CCACCAGTGTCTCTGTTTGAAGTG-GTG-TTTCTG-AACGT--GCCTGAT  1136

seq1  GTGTTGGTTTGTTTCTCTGTGTCTCATCCTATGTTTCTGAAGCATGGTGC  1200
      | ||||| | ||||||||| ||                            
seq2  G-GTTGG-TGGTTTCTCTG-GT----------------------------  1155

seq1  AGTCTGAGTTTGGATCCGCCTGTGTTTAGATACTGATCAGCCTGAGTTTG  1250
                                                        
seq2  --------------------------------------------------  1155

seq1  GATCCGCCTGAGTTTGGTTTCTCTGGT  1277
                                 
seq2  ---------------------------  1155