BAC Information

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BAC

Clone NameB6Ng01-119I17
Chromosome15 (Build37)
Map Location 36,777,969 - 36,909,918
singlet/doubletdoublet
Overlap genenone
Upstream geneVps13b, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz
Downstream geneZfp706, LOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119I17.bB6Ng01-119I17.g
ACCDH923730DH923731
length1,142822
definitionDH923730|Mus musculus domesticus DNA, BAC clone: B6Ng01-119I17, 5' end.DH923731|Mus musculus domesticus DNA, BAC clone: B6Ng01-119I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,777,969 - 36,779,114)(36,909,098 - 36,909,918)
sequence
gaattcattcagattgaatgccccactggagccaaacctttttctctgag
tggagcttagtgcagcgatttagtacagggaaggcaggtgtctctctgag
agcaaaataaacagcagcagtcgccatgatagggctcctctggcctcaga
gcagatgccagagccacgggtccgtggggagctagcaggaagactcctgg
gagggaagctggcaggaggcaggtgaggacaggaccacagtcacattgct
cctgtgtgagcagggccccaggggagctctgtgtgctggaggctgacagg
ggtacagccttttcctccgggccccacaggcacatgaaccacactgaaag
ttttacaaaagaacactgaaatttatctgtatatgatgaaatttaaatgg
atcagaaatttgcaccaggctagcgtcaaagttaaagagatctgcctgcc
tcagcctcccaagtgctaggactgaaggtgtgggtctctaaggtgtggac
ctagcctaagatgtatttacttttctttcaaaagaatttttgttagcttt
gtttagtttcatgtgtatttttcctgcatgtatgtatgtgtatcatgttc
atgtgaggtgaacaagtcagaaggggtcagatcctctagaactatagtta
cagatggttgtgaaccaccatgtggatactgggaaccaaacactgtcctc
tgcaaaaccaagtgctcttaaccactagcctgaagagttattttaaagta
tgtgtgtctatgtctgttagtgtgactgtgtgtcttgtgtgtgtgtctgt
gtttgtatgtgtgtatgtatatatgtgtctgtgtgtgtgtgcccacatct
tctcaggtgcttgaagagttcagaactgaatattataatcccttggggct
gaagttatatgcaattgttgagctgcctgatatgagtgctgaaaagcaaa
cgagtcatttagagcaggtattttgtgttcttaaccactgagccaatttc
cagcccttacatcatataattcttacatacagttcctcctcaggacatga
atttaccaattgccccacctggtgctttacaacattaaggttaaatttta
agtgttccttagcatttattggcatttctcatgatgagcctt
gaattccagaggaggcaaggcagtgggtgatccaagcagggaatcgtctt
tctcttaccaaaagtgtagtttcaggcctcaggtggctccacccacacaa
agtctggctctctgcatccctcaagctggtggtgggctgctctcccgcta
ggtggccaggagcaccggcttctgccccgcctactccctgtggcctcatt
agcatattgcacgacctgcctatggggtcgtaggtgaagagctggtcgca
aaggtaagggagggagtgggtgtcgatgcaaagctatttagaaaagaaat
ctgtttttttttttttttctgtgtgcctcttctgtatgagcaccgtctgc
tttcttgtcgttgcacgcgtcacttgtcaccagaacgtttttccgttgtc
tcctgggcgtttgtcttacccttctagagtcagccactcctccctcttct
cctagcattcaagcaaacccacatacattcccttccctcgctttgctttt
ggaaacagaacgctgctttctgttaacagaaagaagaaaggggtgtgggg
tgggggagccaacggttccatctctatgtccacatggcggatctcaaggc
aggattcttttccacctgtgtggaactttaattagttcaagtgggaggtc
tgtgccaagaaatagggtgcgcttttgtcgcagtggggatcagccaagca
gatttcctccctcactgccgtttcacatcaaaccccactctcagcttttt
ttgctgaagctctgtctgtgtattagactcagggtctgaagacggccagg
agctgccccacagacccacggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_36777969_36779114
seq2: B6Ng01-119I17.b_46_1187

seq1  GAATTCATTCAGATTGAATGCCCCACTGGAGCCAAACCTTTTTCTCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAGATTGAATGCCCCACTGGAGCCAAACCTTTTTCTCTGAG  50

seq1  TGGAGCTTAGTGCAGCGATTTAGTACAGGGAAGGCAGGTGTCTCTCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTTAGTGCAGCGATTTAGTACAGGGAAGGCAGGTGTCTCTCTGAG  100

seq1  AGCAAAATAAACAGCAGCAGTCGCCATGATAGGGCTCCTCTGGCCTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATAAACAGCAGCAGTCGCCATGATAGGGCTCCTCTGGCCTCAGA  150

seq1  GCAGATGCCAGAGCCACGGGTCCGTGGGGAGCTAGCAGGAAGACTCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCCAGAGCCACGGGTCCGTGGGGAGCTAGCAGGAAGACTCCTGG  200

seq1  GAGGGAAGCTGGCAGGAGGCAGGTGAGGACAGGACCACAGTCACATTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGCTGGCAGGAGGCAGGTGAGGACAGGACCACAGTCACATTGCT  250

seq1  CCTGTGTGAGCAGGGCCCCAGGGGAGCTCTGTGTGCTGGAGGCTGACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGAGCAGGGCCCCAGGGGAGCTCTGTGTGCTGGAGGCTGACAGG  300

seq1  GGTACAGCCTTTTCCTCCGGGCCCCACAGGCACATGAACCACACTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGCCTTTTCCTCCGGGCCCCACAGGCACATGAACCACACTGAAAG  350

seq1  TTTTACAAAAGAACACTGAAATTTATCTGTATATGATGAAATTTAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAAAGAACACTGAAATTTATCTGTATATGATGAAATTTAAATGG  400

seq1  ATCAGAAATTTGCACCAGGCTAGCGTCAAAGTTAAAGAGATCTGCCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAATTTGCACCAGGCTAGCGTCAAAGTTAAAGAGATCTGCCTGCC  450

seq1  TCAGCCTCCCAAGTGCTAGGACTGAAGGTGTGGGTCTCTAAGGTGTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCCCAAGTGCTAGGACTGAAGGTGTGGGTCTCTAAGGTGTGGAC  500

seq1  CTAGCCTAAGATGTATTTACTTTTCTTTCAAAAGAATTTTTGTTAGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTAAGATGTATTTACTTTTCTTTCAAAAGAATTTTTGTTAGCTTT  550

seq1  GTTTAGTTTCATGTGTATTTTTCCTGCATGTATGTATGTGTATCATGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTTCATGTGTATTTTTCCTGCATGTATGTATGTGTATCATGTTC  600

seq1  ATGTGAGGTGAACAAGTCAGAAGGGGTCAGATCCTCTAGAACTATAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGTGAACAAGTCAGAAGGGGTCAGATCCTCTAGAACTATAGTTA  650

seq1  CAGATGGTTGTGAACCACCATGTGGATACTGGGAACCAAACACTGTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTTGTGAACCACCATGTGGATACTGGGAACCAAACACTGTCCTC  700

seq1  TGCAAAACCAAGTGCTCTTAACCACTAGCCTGAAGAGTTATTTTAAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACCAAGTGCTCTTAACCACTAGCCTGAAGAGTTATTTTAAAGTA  750

seq1  TGTGTGTCTATGTCTGTTAGTGTGACTGTGTGTCTTGTGTGTGTGTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTATGTCTGTTAGTGTGACTGTGTGTCTTGTGTGTGTGTCTGT  800

seq1  GTTTGTATGTGTGTATGTATATATGTGTCTGTGTGTGTGTGCCCACATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATGTGTGTATGTATATATGTGTCTGTGTGTGTGTGCCCACATCT  850

seq1  TCTCAGGTGCTTGAAGAGTTCAGAACTGAATATTAT-ATCCCTTGGGGCT  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTCAGGTGCTTGAAGAGTTCAGAACTGAATATTATAATCCCTTGGGGCT  900

seq1  GAAGTTATATGCAATTG-TGAGCTGCCTGATATGAGTGCTGAAAAGCAAA  948
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAGTTATATGCAATTGTTGAGCTGCCTGATATGAGTGCTGAAAAGCAAA  950

seq1  CGAGTCATTTAGAGGCAGGTATTTTGTGTTCTTAACCACTGAGCCAAATC  998
      ||||||||||||| ||||||||||||||||||||||||||||||| ||| 
seq2  CGAGTCATTTAGA-GCAGGTATTTTGTGTTCTTAACCACTGAGCC-AATT  998

seq1  TCCAGCCCTTACATCATAT-ATTCTTACAACCAAGTTCCTCCTCAGGGAC  1047
      ||||||||||||||||||| |||||||||  | |||||||||||| ||||
seq2  TCCAGCCCTTACATCATATAATTCTTACATAC-AGTTCCTCCTCA-GGAC  1046

seq1  ATGATTTTACCAA-TGCCCCACCT-GTGCTTTACAACATTAAAGTTAATT  1095
      |||| |||||||| |||||||||| ||||||||||||||||| ||||| |
seq2  ATGAATTTACCAATTGCCCCACCTGGTGCTTTACAACATTAAGGTTAAAT  1096

seq1  TTTAAAAAGTGTTCCTTAGCATTTATTTGCAATTAAATCATGATGAGCCT  1145
      |||   ||||||||||||||||||||| ||| ||   |||||||||||||
seq2  TTT---AAGTGTTCCTTAGCATTTATTGGCATTT--CTCATGATGAGCCT  1141

seq1  T  1146
      |
seq2  T  1142

seq1: chr15_36909098_36909918
seq2: B6Ng01-119I17.g_68_889 (reverse)

seq1  CCCGTGGGTCTGTGGGGCAGCTCCTGGCCGTCTTCAGACCCTGGGTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCGTGGGTCTGTGGGGCAGCTCCTGGCCGTCTTCAGACCCTGAGTCTAA  50

seq1  TACACAGACAGAGCTTCAGC-AAAAAAGCTGAGAGTGGGGTTTGGTGTGA  99
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  TACACAGACAGAGCTTCAGCAAAAAAAGCTGAGAGTGGGGTTTGATGTGA  100

seq1  AACGGCAGTGAGGGAGGAAATCTGCTTGGCTGATCCCCACTGCGACAAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCAGTGAGGGAGGAAATCTGCTTGGCTGATCCCCACTGCGACAAAA  150

seq1  GCGCACCCTATTTCTTGGCACAGACCTCCCACTTGAACTAATTAAAGTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACCCTATTTCTTGGCACAGACCTCCCACTTGAACTAATTAAAGTTC  200

seq1  CACACAGGTGGAAAAGAATCCTGCCTTGAGATCCGCCATGTGGACATAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGTGGAAAAGAATCCTGCCTTGAGATCCGCCATGTGGACATAGA  250

seq1  GATGGAACCGTTGGCTCCCCCACCCCACACCCCTTTCTTCTTTCTGTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACCGTTGGCTCCCCCACCCCACACCCCTTTCTTCTTTCTGTTAA  300

seq1  CAGAAAGCAGCGTTCTGTTTCCAAAAGCAAAGCGAGGGAAGGGAATGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCAGCGTTCTGTTTCCAAAAGCAAAGCGAGGGAAGGGAATGTAT  350

seq1  GTGGGTTTGCTTGAATGCTAGGAGAAGAGGGAGGAGTGGCTGACTCTAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTGCTTGAATGCTAGGAGAAGAGGGAGGAGTGGCTGACTCTAGA  400

seq1  AGGGTAAGACAAACGCCCAGGAGACAACGGAAAAACGTTCTGGTGACAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAGACAAACGCCCAGGAGACAACGGAAAAACGTTCTGGTGACAAG  450

seq1  TGACGCGTGCAACGACAAGAAAGCAGACGGTGCTCATACAGAAGAGGCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGCGTGCAACGACAAGAAAGCAGACGGTGCTCATACAGAAGAGGCAC  500

seq1  ACAGAAAAAAAAAAAAAAACAGATTTCTTTTCTAAATAGCTTTGCATCGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAAAAAAAAAAACAGATTTCTTTTCTAAATAGCTTTGCATCGA  550

seq1  CACCCACTCCCTCCCTTACCTTTGCGACCAGCTCTTCACCTACGACCCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCCCTCCCTTACCTTTGCGACCAGCTCTTCACCTACGACCCCA  600

seq1  TAGGCAGGTCGTGCAATATGCTAATGAGGCCACAGGGAGTAGGCGGGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGGTCGTGCAATATGCTAATGAGGCCACAGGGAGTAGGCGGGGCA  650

seq1  GAAGCCGGTGCTCCTGGCCACCTAGCGGGAGAGCAGCCCACCACCAGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCGGTGCTCCTGGCCACCTAGCGGGAGAGCAGCCCACCACCAGCTT  700

seq1  GAGGGATGCAGAGAGCCAGACTTTGTGTGGGTGGAGCCACCTGAGGCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGCAGAGAGCCAGACTTTGTGTGGGTGGAGCCACCTGAGGCCTG  750

seq1  AAACTACACTTTTGGTAAGAGAAAGACGATTCCCTGCTTGGATCACCCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACACTTTTGGTAAGAGAAAGACGATTCCCTGCTTGGATCACCCAC  800

seq1  TGCCTTGCCTCCTCTGGAATTC  821
      ||||||||||||||||||||||
seq2  TGCCTTGCCTCCTCTGGAATTC  822