BAC Information

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BAC

Clone NameB6Ng01-119P02
Chromosome15 (Build37)
Map Location 102,793,350 - 102,929,496
singlet/doubletdoublet
Overlap geneHoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4
Upstream geneKrt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11
Downstream geneLOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119P02.bB6Ng01-119P02.g
ACCDH924020DH924021
length627620
definitionDH924020|Mus musculus domesticus DNA, BAC clone: B6Ng01-119P02, 5' end.DH924021|Mus musculus domesticus DNA, BAC clone: B6Ng01-119P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,928,871 - 102,929,496)(102,793,350 - 102,793,969)
sequence
gaattcaacctgaaaggaaaggcagtacacatgtaaagtcaggtggagga
tggggccagatcactacagcagatggagtggcatgtgggtgggtgggtgg
gagatagtattctgatattccatctgagaagatttcccagaggaggtaac
tataggttaggattccagtggatgtgaaagataataggaatagaaaaata
tagggaagaagttatacattgatgagaaagaggaagaatcatgccaaggc
cggctaagagtagggagataaagcataattgtcttgctgacaccaaatca
aagtaatcaccactcactgaaggcatactgtgtgcaaggcacataagatt
gtgcaaggtacataagaatcactactcactgaggggttagcagtgggcaa
gactatgtgagggagttgcggtcagacagtggagacaggaactgttctca
tatctacatgaagaaggatgaaggaatgctctatggacagagctgctaag
ttactcttctgggactgctgtttgtggatgaatcacagggccctgactgg
gctgcaacacttccaggtgatggttttaatggcttttcccctggggacat
ccagtgaggatttgagtcctcagtaaa
gaattccacattttgcttggagtttccctgctctcaattcaagtgggaca
gggcttggtgctctagaagaaaagagaattgttccttcaagatttgagaa
aagaacgagtaatctcggcatccagaacaaggagaaaaatcccaagagtc
agtgatgtaattttgctttccattttttgcttgaagaggtttcagcgtgc
atattttaaaattgcatttaattatttttattccacaaggagagacactc
ttcctctctctctcttcatcttcagatgttcccaggtcatctttaacctc
tcagggaaactccgacaattttcagagaagaaaacagggtgcttctgggc
gatttgagggcttcagccgaaaagatcctaacctttattcctatcaattc
actgggatcctcatggcatctgtccccgaagaactgtagggcctttctgg
agtcagccaggaacccctgagccctcttctgctcccttgctcacagaccc
aaaaatatcagaaggcctagctcagccggactgcccttcagtgtctggac
gcagggcgggaagagtgaaaaagccctgggctttctcttagggagggggt
gggatttattgagagatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102928871_102929496
seq2: B6Ng01-119P02.b_47_673 (reverse)

seq1  TTTACTGAGGACTCAAATCCTCACTGGATGTCCCCAGGGG-AAAGCCATT  49
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTACTGAGGACTCAAATCCTCACTGGATGTCCCCAGGGGAAAAGCCATT  50

seq1  AAAACCATCACCTGGAAGTGTTGCAGCCCAGTCAGGGCCCTGTGATTCAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATCACCTGGAAGTGTTGCAGCCCAGTCAGGGCCCTGTGATTCAT  100

seq1  CCACAAACAGCAGTCCCAGAAGAGTAACTTAGCAGCTCTGTCCATAGAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACAGCAGTCCCAGAAGAGTAACTTAGCAGCTCTGTCCATAGAGC  150

seq1  ATTCCTTCATCCTTCTTCATGTAGATATGAGAACAGTTCCTGTCTCCACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCATCCTTCTTCATGTAGATATGAGAACAGTTCCTGTCTCCACT  200

seq1  GTCTGACCGCAACTCCCTCACATAGTCTTGCCCACTGCTAACCCCTCAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACCGCAACTCCCTCACATAGTCTTGCCCACTGCTAACCCCTCAGT  250

seq1  GAGTAGTGATTCTTATGTACCTTGCACAATCTTATGTGCCTTGCACACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTGATTCTTATGTACCTTGCACAATCTTATGTGCCTTGCACACAG  300

seq1  TATGCCTTCAGTGAGTGGTGATTACTTTGATTTGGTGTCAGCAAGACAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTTCAGTGAGTGGTGATTACTTTGATTTGGTGTCAGCAAGACAAT  350

seq1  TATGCTTTATCTCCCTACTCTTAGCCGGCCTTGGCATGATTCTTCCTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTATCTCCCTACTCTTAGCCGGCCTTGGCATGATTCTTCCTCTT  400

seq1  TCTCATCAATGTATAACTTCTTCCCTATATTTTTCTATTCCTATTATCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCAATGTATAACTTCTTCCCTATATTTTTCTATTCCTATTATCTT  450

seq1  TCACATCCACTGGAATCCTAACCTATAGTTACCTCCTCTGGGAAATCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCACTGGAATCCTAACCTATAGTTACCTCCTCTGGGAAATCTTC  500

seq1  TCAGATGGAATATCAGAATACTATCTCCCACCCACCCACCCACATGCCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGAATATCAGAATACTATCTCCCACCCACCCACCCACATGCCAC  550

seq1  TCCATCTGCTGTAGTGATCTGGCCCCATCCTCCACCTGACTTTACATGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGCTGTAGTGATCTGGCCCCATCCTCCACCTGACTTTACATGTG  600

seq1  TACTGCCTTTCCTTTCAGGTTGAATTC  626
      |||||||||||||||||||||||||||
seq2  TACTGCCTTTCCTTTCAGGTTGAATTC  627

seq1: chr15_102793350_102793969
seq2: B6Ng01-119P02.g_70_689

seq1  GAATTCCACATTTTGCTTGGAGTTTCCCTGCTCTCAATTCAAGTGGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATTTTGCTTGGAGTTTCCCTGCTCTCAATTCAAGTGGGACA  50

seq1  GGGCTTGGTGCTCTAGAAGAAAAGAGAATTGTTCCTTCAAGATTTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGTGCTCTAGAAGAAAAGAGAATTGTTCCTTCAAGATTTGAGAA  100

seq1  AAGAACGAGTAATCTCGGCATCCAGAACAAGGAGAAAAATCCCAAGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGAGTAATCTCGGCATCCAGAACAAGGAGAAAAATCCCAAGAGTC  150

seq1  AGTGATGTAATTTTGCTTTCCATTTTTTGCTTGAAGAGGTTTCAGCGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTAATTTTGCTTTCCATTTTTTGCTTGAAGAGGTTTCAGCGTGC  200

seq1  ATATTTTAAAATTGCATTTAATTATTTTTATTCCACAAGGAGAGACACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAAATTGCATTTAATTATTTTTATTCCACAAGGAGAGACACTC  250

seq1  TTCCTCTCTCTCTCTTCATCTTCAGATGTTCCCAGGTCATCTTTAACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTCTCTCTTCATCTTCAGATGTTCCCAGGTCATCTTTAACCTC  300

seq1  TCAGGGAAACTCCGACAATTTTCAGAGAAGAAAACAGGGTGCTTCTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAAACTCCGACAATTTTCAGAGAAGAAAACAGGGTGCTTCTGGGC  350

seq1  GATTTGAGGGCTTCAGCCGAAAAGATCCTAACCTTTATTCCTATCAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGGGCTTCAGCCGAAAAGATCCTAACCTTTATTCCTATCAATTC  400

seq1  ACTGGGATCCTCATGGCATCTGTCCCCGAAGAACTGTAGGGCCTTTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGATCCTCATGGCATCTGTCCCCGAAGAACTGTAGGGCCTTTCTGG  450

seq1  AGTCAGCCAGGAACCCCTGAGCCCTCTTCTGCTCCCTTGCTCACAGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCAGGAACCCCTGAGCCCTCTTCTGCTCCCTTGCTCACAGACCC  500

seq1  AAAAATATCAGAAGGCCTAGCTCAGCCGGACTGCCCTTCAGTGTCTGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCAGAAGGCCTAGCTCAGCCGGACTGCCCTTCAGTGTCTGGAC  550

seq1  GCAGGGCGGGAAGAGTGAAAAAGCCCTGGGCTTTCTCTTAGGGAGGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCGGGAAGAGTGAAAAAGCCCTGGGCTTTCTCTTAGGGAGGGGGT  600

seq1  GGGATTTATTGAGAGATGGG  620
      ||||||||||||||||||||
seq2  GGGATTTATTGAGAGATGGG  620