BAC Information

Click to search

BAC

Clone NameB6Ng01-120B03
Chromosome15 (Build37)
Map Location 48,460,906 - 48,617,297
singlet/doubletdoublet
Overlap geneCsmd3
Upstream genenone
Downstream geneEG665146, LOC100039600, LOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120B03.bB6Ng01-120B03.g
ACCDH924111DH924112
length1,1521,160
definitionDH924111|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B03, 5' end.DH924112|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,616,142 - 48,617,297)(48,460,906 - 48,462,070)
sequence
gaattcactagcttatatttaggataagctctcctgcatttcacattctg
ttcctccagataataatttgatcctatgagataagagttgggtgaaacag
ggtcctataatgaatgttcacaatgcatgagtgggccgtctaacttacag
ttccaggctgagattgttattacctgcattctcacagccttggatctgtg
tcccctgaaaggattccttcaaaaggtcttgccttacaactgctcctcca
tatttggggttaggcccagcagttttcatctctaagaagttgctctgtca
caaaccagttagctttaaactgatattcaggagaccccctttgaatagaa
agtgaaagaaaatgaactaaaatctggcttggcaaatcactaattctatt
ggctgttgtgtgtctaaggatttctcacagggttaatattttctatggaa
ggtagccgtgtcccacgactgtattaaaaatctctcctaaaatgtctaac
cttatcgctttagcataatagtcatgcagaaggacatgaagaatgtcaga
gggattctggtggcattagttatagcatcattaccctgtcagctcatagg
cacatttactgcagtgatttttcaaggcttctctaggaaacggtaccagt
atcttctagaaacttttctgccaaacaaaagtctcaggttctcaccagca
cagcactgaatcctgttctacggaacataggcacaggcatttgttttcag
catgctaagtagttcattttaatgctttcaaaaatttatagaaaacaact
ccagttaactaggaaaacaaaccaaccaaccaaggcactagagctacata
cacacacaaaaaaaattgaaatgatattgacatggaggacctttatataa
agaaatcagatttttctaagcctcagctgcactgctcgtatgcttctgca
aaagactgtatctttcagtggacttattgaatcagtgatttatgtgaatc
aagtgtgtagtcagagcttggcagactaccatgaaattaaactttgcatg
tgcaaaaagaagggtcttcatctgttataatcgttagtcctaacttttcc
tcacaagtacaaatttcctctacaaggtctgctatccattgactatccat
tc
gaattccaggacagccaggactatacagagaaactttgtcttgaaaaaaa
aaccgaaaaataaaaataaaagtaaaaataaaaataaaaaagaatgtagt
ggatcacttgagggaagtggtgttttacagacacaagagtgcagatgccc
atgtgaactcacaatcattttgacaggtgaataagacctatgcaagctta
cgccagacaaaatcccaacattgaggccaagaaagtgtatatggaatcca
tccactaactggggaactattgatatttgctggctactgagaaagtttaa
gattgtatgttctgtttaattatttggctactagtatgctcatcacccag
aaaaggccccaatcccaagactagtgcaaaaacagaagctgagcatgatg
aggaaaaaagagagagaaagagagagagagtgagagagagagaaacagac
agacagagacagagacagagagagacagagatacagacagacagagacag
agagagacagagacagaagagacagagacagacacacacagaaagcggga
gagagagatgcacatctctgtaaaggggagaattatatgttataaatgag
atcacagaacactatacctccctggcatattaacttttattacggaacta
actttgctaaccattagtgctttttcccatgagtacattgctacccatag
ttagagaatgattcttcatcaccgtggctccataaccgtagctgaaatag
tgacctgaagttacattgttcttaatgtttatcctctagtctgtgtcata
tatttgtaagtttccttcatgtttatgaggaaatgaagattaattagaaa
tgaattaaaccttccttgaaaaagtaatttgtcggatgaaaattatagtg
aagaaagaaatggattgaggtcagaagttatgtgtgtttctatgacccag
tgactgtcagctgaaagatttaaacagcttacaactgatttctgagctgt
catttctttaacgacaaacccgaggaaatgtgatcttctttaggaaagtg
tcaccattataccacctatatcatacatccctatgagaaaaacaatgatg
ctataccctatgtccatacacttcttgtgggaaaaaacataattctctga
ataacattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_48616142_48617297
seq2: B6Ng01-120B03.b_47_1198 (reverse)

seq1  GAATGGGGTAGTCAAT-GATAGCAAGAACTTGTAAGAGGAAA-TTGTACT  48
      |||| || |||||||| |||||| ||| ||||| |||||||| |||||||
seq2  GAAT-GGATAGTCAATGGATAGC-AGACCTTGT-AGAGGAAATTTGTACT  47

seq1  TGTTGAGGAAAAGTTAAGGACTAACGA-TATAACAGATGAAGACCCTTCT  97
      || |||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TG-TGAGGAAAAGTT-AGGACTAACGATTATAACAGATGAAGACCCTTCT  95

seq1  TTTTGCACATGCAAAGTTTAATTTCATGGTAGTTCTGCCAAGCTCTTGAC  147
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  TTTTGCACATGCAAAGTTTAATTTCATGGTAG-TCTGCCAAGCTC-TGAC  143

seq1  TACACACTTGATTCACATAAATCACCTGATTCAATAAGTCCACTGAAAGA  197
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TACACACTTGATTCACATAAATCA-CTGATTCAATAAGTCCACTGAAAGA  192

seq1  TACAGTCTTTTGCAGAAGCATACGAGCAGTGCAGCTGAGGCTTAG-AAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACAGTCTTTTGCAGAAGCATACGAGCAGTGCAGCTGAGGCTTAGAAAAA  242

seq1  TCTGATTTCTTTATATAAAGGTCCTCCATGTCATTATCATTTCAATTTTT  296
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTGATTTCTTTATATAAAGGTCCTCCATGTCAATATCATTTCAATTTTT  292

seq1  TTTGTGTGTGTATGTAGCTCTAGTGCCTTGGTTGGTTGGTTTGTTTTCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTGTATGTAGCTCTAGTGCCTTGGTTGGTTGGTTTGTTTTCCT  342

seq1  AGTTTACTGGAGTTGTTTTCTATAAATTTTTGAAAGCATTAAAATGAACT  396
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTGGAGTTGTTTTCTATAAATTTTTGAAAGCATTAAAATGAACT  392

seq1  ACTTAGCATGCTGAAAACAAATGCCTGTGCCTATGTTCCGTAGAACAGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCATGCTGAAAACAAATGCCTGTGCCTATGTTCCGTAGAACAGGA  442

seq1  TTCAGTGCTGTGCTGGTGAGAACCTGAGACTTTTGTTTGGCAGAAAAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCTGTGCTGGTGAGAACCTGAGACTTTTGTTTGGCAGAAAAGTT  492

seq1  TCTAGAAGATACTGGTACCGTTTCCTAGAGAAGCCTTGAAAAATCACTGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGATACTGGTACCGTTTCCTAGAGAAGCCTTGAAAAATCACTGC  542

seq1  AGTAAATGTGCCTATGAGCTGACAGGGTAATGATGCTATAACTAATGCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGTGCCTATGAGCTGACAGGGTAATGATGCTATAACTAATGCCA  592

seq1  CCAGAATCCCTCTGACATTCTTCATGTCCTTCTGCATGACTATTATGCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCCCTCTGACATTCTTCATGTCCTTCTGCATGACTATTATGCTA  642

seq1  AAGCGATAAGGTTAGACATTTTAGGAGAGATTTTTAATACAGTCGTGGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGATAAGGTTAGACATTTTAGGAGAGATTTTTAATACAGTCGTGGGA  692

seq1  CACGGCTACCTTCCATAGAAAATATTAACCCTGTGAGAAATCCTTAGACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTACCTTCCATAGAAAATATTAACCCTGTGAGAAATCCTTAGACA  742

seq1  CACAACAGCCAATAGAATTAGTGATTTGCCAAGCCAGATTTTAGTTCATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAGCCAATAGAATTAGTGATTTGCCAAGCCAGATTTTAGTTCATT  792

seq1  TTCTTTCACTTTCTATTCAAAGGGGGTCTCCTGAATATCAGTTTAAAGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCACTTTCTATTCAAAGGGGGTCTCCTGAATATCAGTTTAAAGCT  842

seq1  AACTGGTTTGTGACAGAGCAACTTCTTAGAGATGAAAACTGCTGGGCCTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTTGTGACAGAGCAACTTCTTAGAGATGAAAACTGCTGGGCCTA  892

seq1  ACCCCAAATATGGAGGAGCAGTTGTAAGGCAAGACCTTTTGAAGGAATCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAATATGGAGGAGCAGTTGTAAGGCAAGACCTTTTGAAGGAATCC  942

seq1  TTTCAGGGGACACAGATCCAAGGCTGTGAGAATGCAGGTAATAACAATCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGGACACAGATCCAAGGCTGTGAGAATGCAGGTAATAACAATCT  992

seq1  CAGCCTGGAACTGTAAGTTAGACGGCCCACTCATGCATTGTGAACATTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGAACTGTAAGTTAGACGGCCCACTCATGCATTGTGAACATTCA  1042

seq1  TTATAGGACCCTGTTTCACCCAACTCTTATCTCATAGGATCAAATTATTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGACCCTGTTTCACCCAACTCTTATCTCATAGGATCAAATTATTA  1092

seq1  TCTGGAGGAACAGAATGTGAAATGCAGGAGAGCTTATCCTAAATATAAGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGAACAGAATGTGAAATGCAGGAGAGCTTATCCTAAATATAAGC  1142

seq1  TAGTGAATTC  1156
      ||||||||||
seq2  TAGTGAATTC  1152

seq1: chr15_48460906_48462070
seq2: B6Ng01-120B03.g_64_1223

seq1  GAATTCCAGGACAGCCAGGACTATACAGAGAAACTTTGTCTTGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGACTATACAGAGAAACTTTGTCTTGAAAAAAA  50

seq1  AACCGAAAAATAAAAATAAAAGTAAAAATAAAAATAAAAAAGAATGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAAAAATAAAAATAAAAGTAAAAATAAAAATAAAAAAGAATGTAGT  100

seq1  GGATCACTTGAGGGAAGTGGTGTTTTACAGACACAAGAGTGCAGATGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACTTGAGGGAAGTGGTGTTTTACAGACACAAGAGTGCAGATGCCC  150

seq1  ATGTGAACTCACAATCATTTTGACAGGTGAATAAGACCTATGCAAGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACTCACAATCATTTTGACAGGTGAATAAGACCTATGCAAGCTTA  200

seq1  CGCCAGACAAAATCCCAACATTGAGGCCAAGAAAGTGTATATGGAATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGACAAAATCCCAACATTGAGGCCAAGAAAGTGTATATGGAATCCA  250

seq1  TCCACTAACTGGGGAACTATTGATATTTGCTGGCTACTGAGAAAGTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAACTGGGGAACTATTGATATTTGCTGGCTACTGAGAAAGTTTAA  300

seq1  GATTGTATGTTCTGTTTAATTATTTGGCTACTAGTATGCTCATCACCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTATGTTCTGTTTAATTATTTGGCTACTAGTATGCTCATCACCCAG  350

seq1  AAAAGGCCCCAATCCCAAGACTAGTGCAAAAACAGAAGCTGAGCATGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCCCAATCCCAAGACTAGTGCAAAAACAGAAGCTGAGCATGATG  400

seq1  AGGAAAAAAGAGAGAGAAAGAGAGAGAGAGTGAGAGAGAGAGAAACAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAGAGAGAGAAAGAGAGAGAGAGTGAGAGAGAGAGAAACAGAC  450

seq1  AGACAGAGACAGAGACAGAGAGAGACAGAGATACAGACAGACAGAGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGACAGAGACAGAGAGAGACAGAGATACAGACAGACAGAGACAG  500

seq1  AGAGAGACAGAGACAGAAGAGACAGAGACAGACACACACAGAAAGCGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGAGACAGAAGAGACAGAGACAGACACACACAGAAAGCGGGA  550

seq1  GAGAGAGATGCACATCTCTGTAAAGGGGAGAATTATATGTTATAAATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATGCACATCTCTGTAAAGGGGAGAATTATATGTTATAAATGAG  600

seq1  ATCACAGAACACTATACCTCCCTGGCATATTAACTTTTATTACGGAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAACACTATACCTCCCTGGCATATTAACTTTTATTACGGAACTA  650

seq1  ACTTTGCTAACCATTAGTGCTTTTTCCCATGAGTACATTGCTACCCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTAACCATTAGTGCTTTTTCCCATGAGTACATTGCTACCCATAG  700

seq1  TTAGAGAATGATTCTTCATCACCGTGGCTCCATAACCGTAGCTGAAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAATGATTCTTCATCACCGTGGCTCCATAACCGTAGCTGAAATAG  750

seq1  TGACCTGAAGTTACATTGTTCTTAATGTTTATCCTCTAGTCTGTGTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGAAGTTACATTGTTCTTAATGTTTATCCTCTAGTCTGTGTCATA  800

seq1  TATTTGTAAGGTTTCCTTCATGTTTATGAGGAAATGAAGATTAATTAGAA  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAA-GTTTCCTTCATGTTTATGAGGAAATGAAGATTAATTAGAA  849

seq1  ATGAATTAAACCTTCCTTGAAAAAGTAATTTGTCGGATGAAAAATTATAG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGAATTAAACCTTCCTTGAAAAAGTAATTTGTCGGATG-AAAATTATAG  898

seq1  TGAAGAAAGAAATGGATTGAGGTCAGAAGTTATGTGTGTTTCTATGACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAGAAATGGATTGAGGTCAGAAGTTATGTGTGTTTCTATGACCC  948

seq1  AGTGACTGTCAGCTGAAAGAATTTAAACAGCTTAC-ACTGATTTCTGAGC  999
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  AGTGACTGTCAGCTGAAAG-ATTTAAACAGCTTACAACTGATTTCTGAGC  997

seq1  TGTCATTTCTTTAACGACAAACCCGAGAAAATGTGAACCTTCTTTAAGGA  1049
      ||||||||||||||||||||||||||| ||||||| | ||||||| ||||
seq2  TGTCATTTCTTTAACGACAAACCCGAGGAAATGTG-ATCTTCTTT-AGGA  1045

seq1  AAGTGTCACCCATTATACCA-CTATATCATACATCCCTATGAGAAAAACA  1098
      |||||||| ||||||||||| |||||||||||||||||||||||||||| 
seq2  AAGTGTCA-CCATTATACCACCTATATCATACATCCCTATGAGAAAAAC-  1093

seq1  AATGATGCTATACCACTATGT-CATACAC-TCCTGTGAGAAAAAACATAA  1146
      |||||||||||||| |||||| ||||||| || |||| ||||||||||||
seq2  AATGATGCTATACC-CTATGTCCATACACTTCTTGTGGGAAAAAACATAA  1142

seq1  ATCCTAGAATAAACATTTA  1165
       ||   |||| ||||||||
seq2  TTCTCTGAAT-AACATTTA  1160