BAC Information

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BAC

Clone NameB6Ng01-121D12
Chromosome15 (Build37)
Map Location 102,573,956 - 102,706,731
singlet/doubletdoublet
Overlap geneLOC637762, LOC100043050
Upstream geneKrt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1
Downstream geneHoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121D12.bB6Ng01-121D12.g
ACCDH924957DH924958
length1,087847
definitionDH924957|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D12, 5' end.DH924958|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,705,640 - 102,706,731)(102,573,956 - 102,574,800)
sequence
gaattcactctgtagaccagactggcttcaaactcagagatctgcttgcc
cctccctgtaaaaagctgggattaaaggtgtgggacaccaccggccaaca
aaatgtaagctcttgaggacagagacctcaactgccctgcaagctagtgc
atcttcagtgctgaaaacaaatcgtgtatgtcgtatagtagatgtgacat
aaatagtgcgataaatatcaggataggctggctgtggtggtgcatgcctt
tagtcccagcacttgggaggcagagacaggtggatttctgtgagtttgag
gcaagcctggtctacagagtgagttccaagacagtcagagttacatagag
agagcctctctctgtctcaaaaaaacaaaacaaaacaaaacaaaaaaaca
aaaaaccagtcaggataaataaataaatggcttattttaaccatttctgt
gcccattctgggtctgtccattaaggaggacatgaaacgatgttggtaaa
gatagaccaggacccctggatccacatccctaaggcagaaaagatatatg
agagacaaagctgaaaagatcggtgcaggcaggatccttggagggatggg
cctacggaatattccacacaagaacatatccaccgaatacttaatctcca
acattttatggccttccagtatgtatcatgagtgaccataaaggtggaca
agctgtgattctgaggtatgcattttggtgagatgcacagtttatgaaat
gggcaaggccctaagcaaaggtttgtgaaggacgttatgggaacagagga
ggtaagtgaataagtacctgggagtggagcttgatgcctgaccgcttgaa
ctagagtttgaagcaagagctctttgctcatttgccaagaatgggagggc
agggtggtttctacacagggcaggataaaaccttacagagctctgtgcag
aggagagcaagtatgggctgtcactgtgctggttatcggaacgtcagtca
agacataaagcacatctcatcagcacacctgtgttggcagcacacacttc
gtactcttagtaaaagcaggaagggggcactgtgtgt
gaattcactgaaccaggcactagtttgagtgcctactgtgtacaggagca
gttcatatgtttcttgaagggggggggcaaaaagggggcagaccccacat
ttactgcttcttttcttgtatgctttttaagacaccaagctagcctcaaa
actgaggatgctcttggatttctgatccttttgcctccactctcagaatg
ttggggtagcaggtttaactcctgctccttttctgtttcatctccttgcc
agatagctggggtgcagagttttgatcctcaggtacttttctgttcttca
ctcccatccccaagagtaagcacctttactgggcttctcacctctctgcc
tgggtgccgggtgtgtgtgtatggagcacggggcttgggtgctcctagtg
tctctcccatagaggaactgaggttatgggggcaagtcacattaccataa
aggcccatggagcaggcagggagaggacagacatttggaatggtagagaa
ggtttggggaggagccgtgtgctgcagtcagagccggtgctgcattctaa
tcagcgctgcggaggctgcgcagcggccgtcaatcatccacacaaagggc
cgcccgcccccttccccctctcaggcctgcgcaccagccttcccactcca
tcctcagaacgtctgggcagtgctaagaggctggggttggggggagcaga
cccgccaacaggagggacccacgatacacccagtaaattcaagctgaatc
tcacagagtgggggccattaacaagctgggtgggtcccagaacccgggag
gctgaagagagaaaaaagagagacaaacggacatacttggaagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102705640_102706731
seq2: B6Ng01-121D12.b_46_1132 (reverse)

seq1  ACACACACGTTGCCCCCTTCCTGCTTTTTACTAAGAGTACGGAAGTGTGT  50
        ||||||  |||||||||||||| ||||||||||||||| |||||||||
seq2  --ACACACAGTGCCCCCTTCCTGC-TTTTACTAAGAGTAC-GAAGTGTGT  46

seq1  GCTGCCAGGACAGGTGTGCTGATGAGATGTTGCTTTATGTCTTGACTGAC  100
      |||||||  |||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGCCAACACAGGTGTGCTGATGAGATG-TGCTTTATGTCTTGACTGAC  95

seq1  GTTCCGGCTAACAGCCACAGTGTACAGCCC-TACTTGCTTCTCCTCTGCA  149
      ||||| | ||||   ||||||| ||||||| ||||||| |||||||||||
seq2  GTTCC-GATAACCAGCACAGTG-ACAGCCCATACTTGC-TCTCCTCTGCA  142

seq1  CAGAGCTCTGT-AGGTTTTATCCTGCCCTGTGTAGAAACCACCCTGCCCT  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCTGTAAGGTTTTATCCTGCCCTGTGTAGAAACCACCCTGCCCT  192

seq1  CCCATTCTTGGCAAATGAGC-AAGAGCTCTTGCTTCAAACTCTAGTTCAA  247
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCATTCTTGGCAAATGAGCAAAGAGCTCTTGCTTCAAACTCTAGTTCAA  242

seq1  GCGGTCAGGCATCAAGCTCCACTCCCAGGTACTTATTCACTTACCTCCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCAGGCATCAAGCTCCACTCCCAGGTACTTATTCACTTACCTCCTC  292

seq1  TGTTCCCATAACGTCCTTCACAAACCTTTGCTTAGGGCCTTGCCCATTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCATAACGTCCTTCACAAACCTTTGCTTAGGGCCTTGCCCATTTC  342

seq1  ATAAACTGTGCATCTCACCAAAATGCATACCTCAGAATCACAGCTTGTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTGTGCATCTCACCAAAATGCATACCTCAGAATCACAGCTTGTCC  392

seq1  ACCTTTATGGTCACTCATGATACATACTGGAAGGCCATAAAATGTTGGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATGGTCACTCATGATACATACTGGAAGGCCATAAAATGTTGGAG  442

seq1  ATTAAGTATTCGGTGGATATGTTCTTGTGTGGAATATTCCGTAGGCCCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTATTCGGTGGATATGTTCTTGTGTGGAATATTCCGTAGGCCCAT  492

seq1  CCCTCCAAGGATCCTGCCTGCACCGATCTTTTCAGCTTTGTCTCTCATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAGGATCCTGCCTGCACCGATCTTTTCAGCTTTGTCTCTCATAT  542

seq1  ATCTTTTCTGCCTTAGGGATGTGGATCCAGGGGTCCTGGTCTATCTTTAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCTGCCTTAGGGATGTGGATCCAGGGGTCCTGGTCTATCTTTAC  592

seq1  CAACATCGTTTCATGTCCTCCTTAATGGACAGACCCAGAATGGGCACAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCGTTTCATGTCCTCCTTAATGGACAGACCCAGAATGGGCACAGA  642

seq1  AATGGTTAAAATAAGCCATTTATTTATTTATCCTGACTGGTTTTTTGTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTAAAATAAGCCATTTATTTATTTATCCTGACTGGTTTTTTGTTT  692

seq1  TTTTGTTTTGTTTTGTTTTGTTTTTTTGAGACAGAGAGAGGCTCTCTCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTGTTTTTTTGAGACAGAGAGAGGCTCTCTCTA  742

seq1  TGTAACTCTGACTGTCTTGGAACTCACTCTGTAGACCAGGCTTGCCTCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCTGACTGTCTTGGAACTCACTCTGTAGACCAGGCTTGCCTCAA  792

seq1  ACTCACAGAAATCCACCTGTCTCTGCCTCCCAAGTGCTGGGACTAAAGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGAAATCCACCTGTCTCTGCCTCCCAAGTGCTGGGACTAAAGGC  842

seq1  ATGCACCACCACAGCCAGCCTATCCTGATATTTATCGCACTATTTATGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCACCACAGCCAGCCTATCCTGATATTTATCGCACTATTTATGTC  892

seq1  ACATCTACTATACGACATACACGATTTGTTTTCAGCACTGAAGATGCACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTACTATACGACATACACGATTTGTTTTCAGCACTGAAGATGCACT  942

seq1  AGCTTGCAGGGCAGTTGAGGTCTCTGTCCTCAAGAGCTTACATTTTGTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCAGGGCAGTTGAGGTCTCTGTCCTCAAGAGCTTACATTTTGTTG  992

seq1  GCCGGTGGTGTCCCACACCTTTAATCCCAGCTTTTTACAGGGAGGGGCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGTGGTGTCCCACACCTTTAATCCCAGCTTTTTACAGGGAGGGGCAA  1042

seq1  GCAGATCTCTGAGTTTGAAGCCAGTCTGGTCTACAGAGTGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTCTGAGTTTGAAGCCAGTCTGGTCTACAGAGTGAATTC  1087

seq1: chr15_102573956_102574800
seq2: B6Ng01-121D12.g_67_913

seq1  GAATTCACTGAACCAGGCACTAGTTTGAGTGCCTACTGTGTACAGGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAACCAGGCACTAGTTTGAGTGCCTACTGTGTACAGGAGCA  50

seq1  GTTCATATGTTTCTTGAAGGGGGGGGGCAAAAAGGGGGCAGACCCCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATATGTTTCTTGAAGGGGGGGGGCAAAAAGGGGGCAGACCCCACAT  100

seq1  TTACTGCTTCTTTTCTTGTATGCTTTTTAAGACACCAAGCTAGCCTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTTCTTTTCTTGTATGCTTTTTAAGACACCAAGCTAGCCTCAAA  150

seq1  ACTGAGGATGCTCTTGGATTTCTGATCCTTTTGCCTCCACTCTCAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGATGCTCTTGGATTTCTGATCCTTTTGCCTCCACTCTCAGAATG  200

seq1  TTGGGGTAGCAGGTTTAACTCCTGCTCCTTTTCTGTTTCATCTCCTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTAGCAGGTTTAACTCCTGCTCCTTTTCTGTTTCATCTCCTTGCC  250

seq1  AGATAGCTGGGGTGCAGAGTTTTGATCCTCAGGTACTTTTCTGTTCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCTGGGGTGCAGAGTTTTGATCCTCAGGTACTTTTCTGTTCTTCA  300

seq1  CTCCCATCCCCAAGAGTAAGCACCTTTACTGGGCTTCTCACCTCTCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCCCCAAGAGTAAGCACCTTTACTGGGCTTCTCACCTCTCTGCC  350

seq1  TGGGTGCCGGGTGTGTGTGTATGGAGCACGGGGCTTGGGTGCTCCTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCCGGGTGTGTGTGTATGGAGCACGGGGCTTGGGTGCTCCTAGTG  400

seq1  TCTCTCCCATAGAGGAACTGAGGTTATGGGGGCAAGTCACATTACCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCATAGAGGAACTGAGGTTATGGGGGCAAGTCACATTACCATAA  450

seq1  AGGCCCATGGAGCAGGCAGGGAGAGGACAGACATTTGGAATGGTAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCATGGAGCAGGCAGGGAGAGGACAGACATTTGGAATGGTAGAGAA  500

seq1  GGTTTGGGGAGGAGCCGTGTGCTGCAGTCAGAGCCGGTGCTGCATTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGGGAGGAGCCGTGTGCTGCAGTCAGAGCCGGTGCTGCATTCTAA  550

seq1  TCAGCGCTGCGGAGGCTGCGCAGCGGCCGTCAATCATCCACACAAAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCTGCGGAGGCTGCGCAGCGGCCGTCAATCATCCACACAAAGGGC  600

seq1  CGCCCGCCCCCTTCCCCCTCTCAGGCCTGCGCACCAGCCTTCCCACTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCGCCCCCTTCCCCCTCTCAGGCCTGCGCACCAGCCTTCCCACTCCA  650

seq1  TCCTCAGAACGTCTGGGCAGTGCTAAGAGGCTGGGGTTGGGGGGAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAACGTCTGGGCAGTGCTAAGAGGCTGGGGTTGGGGGGAGCAGA  700

seq1  CCCGCCAACAGGAGGGACCCACGATACACCCAGTAAATTCAAGCAGAAAC  750
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  CCCGCCAACAGGAGGGACCCACGATACACCCAGTAAATTCAAGCTGAATC  750

seq1  TCACAGAGT-GGGGCCATTACCAAGCTGGGTGGGTCCTAGCACCCTGGAG  799
      ||||||||| |||||||||| |||||||||||||||| || |||| ||||
seq2  TCACAGAGTGGGGGCCATTAACAAGCTGGGTGGGTCCCAGAACCCGGGAG  800

seq1  GCTGAAGAGAG-AAAGAGAGAGACAAAGGGACAGACGTGGAAGGGGA  845
      ||||||||||| ||| ||||||||||| ||||| || ||||||||||
seq2  GCTGAAGAGAGAAAAAAGAGAGACAAACGGACATACTTGGAAGGGGA  847