BAC Information

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BAC

Clone NameB6Ng01-121D23
Chromosome15 (Build37)
Map Location 93,263,292 - 93,402,939
singlet/doubletdoublet
Overlap genePphln1, Prickle1
Upstream genePdzrn4, LOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, LOC627623
Downstream geneZfp42-ps1, LOC100042627, LOC100042631, D630010B17Rik, Adamts20, Pus7l, Irak4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121D23.bB6Ng01-121D23.g
ACCDH924979DH924980
length9531,116
definitionDH924979|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D23, 5' end.DH924980|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,401,986 - 93,402,939)(93,263,292 - 93,264,419)
sequence
gaattcacaggtaccacgagtgtgcctggtgtccactgaggtcacaagag
cgtattggattccttgggactggagtgacagatggttgtgagctgtcatg
tgggtgctgggaaccaaacccaggtcctctggaagagcagccaatgctct
tatgcactgaaccatccagcccctgaatctttgtttgtttgtttgttttt
gttgttgtttgttttatttttgagacagggtctcactggatagaccaggc
tggccttgtacccacagagaaacacctgcttcttgcttcctgagtgtggc
attagagatgcataccaccaagttacaaaccctaattcttgtctgtaagc
tctaatccagaattgctttctttcagaattcaccattcttaatgttttat
caaccaattccaagtacttcgtaatcttttaaaaactttttgtagtatag
atagatggatggatggatggatagatagagcattgacattttattgacct
caaattgaattctttctctcttcacatggtctccagggagttttccctct
ctgtcttagtctttccctctttcatattactgtattaacatatgcatgtg
ccttaatttttttcttaacctcttgatttgcaaatgagttatattttccc
cagtgtacctttagaggctacattgaccgtgcatcactgtggtttgatta
ttttttaagacaggtagacccacgttcagtaggcccaagttgtcctaaaa
cttgaggttcccctgcttcgagttctcaaaggagggattatgggtaatta
agaagtaccttatgactaaataatatcatggcttttgattgacatggctt
ttcataagtactgtatacaagtgcaccatggatattcgctgcacttaaga
actcagtcattggtactcaaatgtcctgaaggaaagtctcacagatctca
ttt
gaattccacttccttctgttccagaatgctggattatgttctaccgttgc
ccagcttttggcattaaacacatagccttcatctgtgatcttcatggatc
cttgagcaccttggtgggtctttaaccttctggcacatttgtccaatgtc
ttacagatctaaataaccttgtgtcgattctgttgtttttcacttacctt
tcccaatgaagagaagaccctggttagtatttgagagggtcagcttactg
ctttttagataatattttgatattttaattacaactgtttgggcataccc
ttctctttctcattctccctctttctcctccctccccctcccccgctact
aatacagtttctctgtgtagccctaactgtcttagaacttaactttagag
accaccttgcttcaactcaacagagatcctcccccctcccccggagtgct
gggattcaaagtgtgcgccactacactcttaatgtcttttaagagtaggc
agaatcgcttctcggccttttggctaagatcaagtgtgtcagagcaggca
gatactccccaccccactcctgaacactgaataataggtcagatggacgc
tccctctgtccacactgcatcacattaaagatcggagacacttgaggttt
gcagttgatttattcttaaaaacttttaccaaactgctttcctaaaatga
ttcatgaagccttaatttcatttttaagttgccatgggctagaaaagcag
ccagtatattgtgtggagtattttttatagaattcactgagagggagagg
aggttcttgagatagtgcgtacggcgcatttgctctctccttttctttcc
ctgacagctcttttccctacctcattgaaaattctccccagctaataaac
ttaaatgcctgtagcaaaatgggtctctggccaatgaaacactcagtgag
tataaacatctgccccaagctgatgacttatgtcatcttgacatccacat
cgtctgagagactgacttctgcaactgacccctgaacttctgggctgtgc
tgtgtacattcttaactgccagctgaaggcatctggcatggctattgttt
gactgtggcattgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_93401986_93402939
seq2: B6Ng01-121D23.b_49_1001 (reverse)

seq1  AAATGAGATCTGTGAGACTTTCCATTCAGGACATTTTGAGTACCAATGAC  50
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  AAATGAGATCTGTGAGACTTTCC-TTCAGGACA-TTTGAGTACCAATGAC  48

seq1  TGAGTTCTTAAGTGCAGCG-ATATCCATGGTGCACTTGTATACAGTACTT  99
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGAGTTCTTAAGTGCAGCGAATATCCATGGTGCACTTGTATACAGTACTT  98

seq1  ATGAAAAGCCATGTCAATCAAAAGCCATGATATTATTTAGTCATAAGGTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGCCATGTCAATCAAAAGCCATGATATTATTTAGTCATAAGGTA  148

seq1  CTTCTTAATTACCCATAATCCCTCCTTTGAGAACTCGAAGCAGGGGAACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAATTACCCATAATCCCTCCTTTGAGAACTCGAAGCAGGGGAACC  198

seq1  TCAAGTTTTAGGACAACTTGGGCCTACTGAACGTGGGTCTACCTGTCTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTTAGGACAACTTGGGCCTACTGAACGTGGGTCTACCTGTCTTA  248

seq1  AAAAATAATCAAACCACAGTGATGCACGGTCAATGTAGCCTCTAAAGGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATCAAACCACAGTGATGCACGGTCAATGTAGCCTCTAAAGGTA  298

seq1  CACTGGGGAAAATATAACTCATTTGCAAATCAAGAGGTTAAGAAAAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGAAAATATAACTCATTTGCAAATCAAGAGGTTAAGAAAAAAAT  348

seq1  TAAGGCACATGCATATGTTAATACAGTAATATGAAAGAGGGAAAGACTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCACATGCATATGTTAATACAGTAATATGAAAGAGGGAAAGACTAA  398

seq1  GACAGAGAGGGAAAACTCCCTGGAGACCATGTGAAGAGAGAAAGAATTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGGGAAAACTCCCTGGAGACCATGTGAAGAGAGAAAGAATTCA  448

seq1  ATTTGAGGTCAATAAAATGTCAATGCTCTATCTATCCATCCATCCATCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGGTCAATAAAATGTCAATGCTCTATCTATCCATCCATCCATCCA  498

seq1  TCTATCTATACTACAAAAAGTTTTTAAAAGATTACGAAGTACTTGGAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATACTACAAAAAGTTTTTAAAAGATTACGAAGTACTTGGAATT  548

seq1  GGTTGATAAAACATTAAGAATGGTGAATTCTGAAAGAAAGCAATTCTGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATAAAACATTAAGAATGGTGAATTCTGAAAGAAAGCAATTCTGGA  598

seq1  TTAGAGCTTACAGACAAGAATTAGGGTTTGTAACTTGGTGGTATGCATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCTTACAGACAAGAATTAGGGTTTGTAACTTGGTGGTATGCATCT  648

seq1  CTAATGCCACACTCAGGAAGCAAGAAGCAGGTGTTTCTCTGTGGGTACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCCACACTCAGGAAGCAAGAAGCAGGTGTTTCTCTGTGGGTACAA  698

seq1  GGCCAGCCTGGTCTATCCAGTGAGACCCTGTCTCAAAAATAAAACAAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTATCCAGTGAGACCCTGTCTCAAAAATAAAACAAACA  748

seq1  ACAACAAAAACAAACAAACAAACAAAGATTCAGGGGCTGGATGGTTCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAACAAACAAACAAACAAAGATTCAGGGGCTGGATGGTTCAGT  798

seq1  GCATAAGAGCATTGGCTGCTCTTCCAGAGGACCTGGGTTTGGTTCCCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGAGCATTGGCTGCTCTTCCAGAGGACCTGGGTTTGGTTCCCAGC  848

seq1  ACCCACATGACAGCTCACAACCATCTGTCACTCCAGTCCCAAGGAATCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATGACAGCTCACAACCATCTGTCACTCCAGTCCCAAGGAATCCA  898

seq1  ATACGCTCTTGTGACCTCAGTGGACACCAGGCACACTCGTGGTACCTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGCTCTTGTGACCTCAGTGGACACCAGGCACACTCGTGGTACCTGTG  948

seq1  AATTC  954
      |||||
seq2  AATTC  953

seq1: chr15_93263292_93264419
seq2: B6Ng01-121D23.g_66_1181

seq1  GAATTCCACTTCCTTCTGTTCCAGAATGCTGGATTATGTTCTACCGTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCCTTCTGTTCCAGAATGCTGGATTATGTTCTACCGTTGC  50

seq1  CCAGCTTTTGGCATTAAACACATAGCCTTCATCTGTGATCTTCATGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTTGGCATTAAACACATAGCCTTCATCTGTGATCTTCATGGATC  100

seq1  CTTGAGCACCTTGGTGGGTCTTTAACCTTCTGGCACATTTGTCCAATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCACCTTGGTGGGTCTTTAACCTTCTGGCACATTTGTCCAATGTC  150

seq1  TTACAGATCTAAATAACCTTGTGTCGATTCTGTTGTTTTTCACTTACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATCTAAATAACCTTGTGTCGATTCTGTTGTTTTTCACTTACCTT  200

seq1  TCCCAATGAAGAGAAGACCCTGGTTAGTATTTGAGAGGGTCAGCTTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGAAGAGAAGACCCTGGTTAGTATTTGAGAGGGTCAGCTTACTG  250

seq1  CTTTTTAGATAATATTTTGATATTTTAATTACAACTGTTTGGGCATACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGATAATATTTTGATATTTTAATTACAACTGTTTGGGCATACCC  300

seq1  TTCTCTTTCTCATTCTCCCTCTTTCTCCTCCCTCCCCCTCCCCCGCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCTCATTCTCCCTCTTTCTCCTCCCTCCCCCTCCCCCGCTACT  350

seq1  AATACAGTTTCTCTGTGTAGCCCTAACTGTCTTAGAACTTAACTTTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTTTCTCTGTGTAGCCCTAACTGTCTTAGAACTTAACTTTAGAG  400

seq1  ACCACCTTGCTTCAACTCAACAGAGATCCTCCCCCCTCCCCCGGAGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTTGCTTCAACTCAACAGAGATCCTCCCCCCTCCCCCGGAGTGCT  450

seq1  GGGATTCAAAGTGTGCGCCACTACACTCTTAATGTCTTTTAAGAGTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCAAAGTGTGCGCCACTACACTCTTAATGTCTTTTAAGAGTAGGC  500

seq1  AGAATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTGTCAGAGCAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTGTCAGAGCAGGCA  550

seq1  GATACTCCCCACCCCACTCCTGAACACTGAATAATAGGTCAGATGGACGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCCCCACCCCACTCCTGAACACTGAATAATAGGTCAGATGGACGC  600

seq1  TCCCTCTGTCCACACTGCATCACATTAAAGATCGGAGACACTTGAGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGTCCACACTGCATCACATTAAAGATCGGAGACACTTGAGGTTT  650

seq1  GCAGTTGATTTATTCTTAAAAACTTTTACCAAACTGCTTTCCTAAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGATTTATTCTTAAAAACTTTTACCAAACTGCTTTCCTAAAATGA  700

seq1  TTCATGAAGCCTTAATTTCATTTTTAAGTTGCCATGGGCTAGAAAAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAGCCTTAATTTCATTTTTAAGTTGCCATGGGCTAGAAAAGCAG  750

seq1  CCAGTATATTGTGTGGAGTA-TTTTTATAGAATTCACTGAGAGGGAGAGG  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAGTATATTGTGTGGAGTATTTTTTATAGAATTCACTGAGAGGGAGAGG  800

seq1  AGG-TCCTGAGATAGTGCGTACGGCGCATTTGCTCTCTCCTTTTCCTTCC  848
      ||| || |||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGTTCTTGAGATAGTGCGTACGGCGCATTTGCTCTCTCCTTTTCTTTCC  850

seq1  CTGACAGCTC-TTTCCCTACCTCATTGAAAATTCTCCCCAGCTAATAAAC  897
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCTCTTTTCCCTACCTCATTGAAAATTCTCCCCAGCTAATAAAC  900

seq1  TTAAATGCCTGTAGCAAAATGGGTCTCTGGCCAATGAAACAACTCAGTGA  947
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTAAATGCCTGTAGCAAAATGGGTCTCTGGCCAATGAAAC-ACTCAGTGA  949

seq1  GTATAAACATCTGCCACCAAGCTTGATGACCTATGTCATCCTTGACACCC  997
      ||||||||||||||| |||||| ||||||| |||||||| ||||||| ||
seq2  GTATAAACATCTGCC-CCAAGC-TGATGACTTATGTCAT-CTTGACATCC  996

seq1  ACATCGTCTGAGGAGAACTGACTCCTGCAAACTGACCCCTG-ACCTCTGT  1046
      ||||||||||| ||| ||||||| |||| |||||||||||| || |||| 
seq2  ACATCGTCTGA-GAG-ACTGACTTCTGC-AACTGACCCCTGAACTTCTGG  1043

seq1  GCTGTGCTGTGTACATCTTTAACTGTCAGGCTGGAAGGGCTCATCTGCCA  1096
      ||||||||||||||||  ||||||| || ||| |||||   |||||| ||
seq2  GCTGTGCTGTGTACATTCTTAACTGCCA-GCT-GAAGG---CATCTGGCA  1088

seq1  TGGCCTATTTGGTTTGACCTGTGGCATTGACA  1128
      ||| |||||  |||||| ||||||||||||||
seq2  TGG-CTATT--GTTTGA-CTGTGGCATTGACA  1116