BAC Information

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BAC

Clone NameB6Ng01-122M12
Chromosome3 (Build37)15 (Build37)
Map Location 41,059,102 - 41,059,73727,277,303 - 27,278,095
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122M12.bB6Ng01-122M12.g
ACCDH926118DH926119
length813938
definitionDH926118|Mus musculus domesticus DNA, BAC clone: B6Ng01-122M12, 5' end.DH926119|Mus musculus domesticus DNA, BAC clone: B6Ng01-122M12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,102 - 41,059,737)(27,277,303 - 27,278,095)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagctctttatatatcttgggtattagtacc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttacagaaggtttgcaatttta
tgaggtcccaattgtcgattctcagtcttacagaacaagccattgctgtt
ctattcaggaatttttcccctgtgccaatatctttgaggcgttcccccat
tttctcctctataagtttcagtgtctctgattttatatggagttccttaa
tccacttagatttgaccttagtacaaggagataggaatggatcaattccc
attcttctacatgataactgccagttgtgcaggcaccatttgttgaaatt
gctgtcttttttccactgcatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgcaggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcaatataccagtaccatgcaatttttatcacaattgc
tctgtagtacagctttagctcaggcatggtgattccaccagaggttcttt
tatccttgaggagagtttttgctatcctagattttttgttattccagatg
aatttgcagattgtcctttctaattcattgaagaattgagttggaattta
gattgcttttggcagagatccatttttactatattgatcctaccatccat
agcatgggagatc
gaattcatcattggaagtggtggtacaagaatttgtgagctgtctcatgt
ggatgctaggaatcaaacataggttctctacaagagcagtgtgctattaa
ctgcagagccatttctctggtctaatgcaggtattgagcaaatgttggca
atatggtggcaagggtcatttggtctaagattgtcagggcttctgagcgt
gcccagagattcctacttggtattcacctttggtgaagcatggcatctgg
aacataagcaagtcacatgacattcaaggatggtgatggccataggttgg
gatgagtagccaacagaggagcatgtgacagtccagtagtcactaagcaa
cactcacctgtcacttctggtatctagaaagattttaaaatgtgaccgtt
gctttcgaggggattaaatgctatgacctggttactctgagcaggtatgt
tttgtaggcagagtttaaaaaattttttctggtaagcttgcaatgacttt
caatgatctcatcttgtcaaaaatctctgttgcaagatgttcagatgtac
ttagaaagtgaaattctcaatctgtttatctatttcaacactctatcatt
agcagctaggttacaaaaaatatttatttcaacagttccaatggttattt
gtgtctcctaagtgaaggaacactacatggctttagagactcagtttctc
ctctttgctctgaaactggctgagtatatgatcttgggataaatcttctt
cttcttctctctctctctcttcttctcttcttcttctctctctctctctc
ttcttctgtctcttctgtctcctgtctgtctctctctctctctcttctct
ctcttcttcttcttctctctgtctctgtctctctgtctctctgtctcttc
ttctctgtctctagtctgtctgtctcttgtctctgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059102_41059737
seq2: B6Ng01-122M12.b_50_686 (reverse)

seq1  GTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATA  50
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  GTGGAATCACCATGCCTGAGCTAAAGCTGTACTACAGAGCAATTGTGATA  50

seq1  AAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAG  100
      |||| ||||||||||||||||| ||||||||||| |||||||||||||||
seq2  AAAATTGCATGGTACTGGTATATTGACAGACAAGTAGACCAATGGAATAG  100

seq1  AATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCG  150
      |||||||||| |||||| ||| |  ||||||||||||||||||||||| |
seq2  AATTGAAGACCCAGAAATGAACCTGCACACCTATGGTCACTTGATCTTTG  150

seq1  ACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAA  200
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  ACAAGGGAGCTAAAACCATGCAGTGGAAAAAAGACAGCAATTTCAACAAA  200

seq1  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCC  250
      ||||||  ||||||||||  ||||||||||||||||||| ||||||||||
seq2  TGGTGCCTGCACAACTGGCAGTTATCATGTAGAAGAATGGGAATTGATCC  250

seq1  ACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCC  300
      | ||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  ATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTCC  300

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  350
      | |||||| ||||||||||||||||||||||||||||| ||||| || ||
seq2  ATATAAAATCAGAGACACTGAAACTTATAGAGGAGAAAATGGGGGAACGC  350

seq1  CTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGC  400
      ||  ||||||| | ||||||||||||||||||| ||||||||||||||||
seq2  CTCAAAGATATTGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGC  400

seq1  TTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAA  450
      |||| |||||||| ||||||| ||||| ||||||||||| ||| ||||||
seq2  TTGTTCTGTAAGACTGAGAATCGACAATTGGGACCTCATAAAATTGCAAA  450

seq1  GCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACA  499
       |||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTTCTGTAAGGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAACA  500

seq1  GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  549
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  GATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGTACTAATACC  550

seq1  CAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACC  599
      ||| |||||| |||| |||||||||||||| |||||||||||||||||||
seq2  CAAGATATATAAAGAGCTCAAGAAGGTGGACTCCAGAAAATCAAATAACC  600

seq1  CCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  636
      |||||||||||||||||||||||||||||||||||||
seq2  CCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  637

seq1: chr15_27277303_27278095
seq2: B6Ng01-122M12.g_68_883 (reverse)

seq1  ---------AGAAGAAGA-----------AGAAGAAGAAGAAGAAGAAGA  30
               |||||||||           ||||||||||| |||||||||
seq2  AGAAGAGACAGAAGAAGAGAGAGAGAGAGAGAAGAAGAAG-AGAAGAAGA  49

seq1  -AGA-AGA-AGAAGAAGAAGAAGAATTATCCCAAGATCATATACTCAGCC  77
       ||| ||| ||||||||||||||| |||||||||||||||||||||||||
seq2  GAGAGAGAGAGAAGAAGAAGAAGATTTATCCCAAGATCATATACTCAGCC  99

seq1  AGTTTCAGAGCAAAGAGGAGAAACTGAGTCTCT-AAGCCATGTAGTGTTC  126
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTTTCAGAGCAAAGAGGAGAAACTGAGTCTCTAAAGCCATGTAGTGTTC  149

seq1  CTTCACTTAGGAGACACAAATAACCATTGGAACTGTTGAAATAAATATTT  176
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTAGGAGACACAAATAACCATTGGAACTGTTGAAATAAATATTT  199

seq1  TTTGTAACCTAGCTGCTAATGATAGAGTGTTGAAATAGATAAACAGATTG  226
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACCTAGCTGCTAATGATAGAGTGTTGAAATAGATAAACAGATTG  249

seq1  AGAATTTCACTTTCTAAGTACATCTGAACATCTTGCAACAGAGATTTTTG  276
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCACTTTCTAAGTACATCTGAACATCTTGCAACAGAGATTTTTG  299

seq1  ACAAGATGAGATCATTGAAAGTCATTGCAAGCTTACCAGAAAAAATTTTT  326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGAGATCATTGAAAGTCATTGCAAGCTTACCAGAAAAAATTTTT  349

seq1  TAAACTCTGCCTACAAAACATACCTGCTCAGAGTAACCAGGTCATAGCAT  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCTGCCTACAAAACATACCTGCTCAGAGTAACCAGGTCATAGCAT  399

seq1  TTAATCCCCTCGAAAGCAACGGTCACATTTTAAAATCTTTCTAGATACCA  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCCTCGAAAGCAACGGTCACATTTTAAAATCTTTCTAGATACCA  449

seq1  GAAGTGACAGGTGAGTGTTGCTTAGTGACTACTGGACTGTCACATGCTCC  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGACAGGTGAGTGTTGCTTAGTGACTACTGGACTGTCACATGCTCC  499

seq1  TCTGTTGGCTACTCATCCCAACCTATGGCCATCACCATCCTTGAATGTCA  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGCTACTCATCCCAACCTATGGCCATCACCATCCTTGAATGTCA  549

seq1  TGTGACTTGCTTATGTTCCAGATGCCATGCTTCACCAAAGGTGAATACCA  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTGCTTATGTTCCAGATGCCATGCTTCACCAAAGGTGAATACCA  599

seq1  AGTAGGAATCTCTGGGCACGCTCAGAAGCCCTGACAATCTTAGACCAAAT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAATCTCTGGGCACGCTCAGAAGCCCTGACAATCTTAGACCAAAT  649

seq1  GACCCTTGCCACCATATTGCCAACATTTGCTCAATACCTGCATTAGACCA  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTGCCACCATATTGCCAACATTTGCTCAATACCTGCATTAGACCA  699

seq1  GAGAAATGGCTCTGCAGTTAATAGCACACTGCTCTTGTAGAGAACCTATG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGGCTCTGCAGTTAATAGCACACTGCTCTTGTAGAGAACCTATG  749

seq1  TTTGATTCCTAGCATCCACATGAGACAGCTCACAAATTCTTGTACCACCA  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCCTAGCATCCACATGAGACAGCTCACAAATTCTTGTACCACCA  799

seq1  CTTCCAATGATGAATTC  793
      |||||||||||||||||
seq2  CTTCCAATGATGAATTC  816