BAC Information

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BAC

Clone NameB6Ng01-124J02
Chromosome15 (Build37)
Map Location 33,528,795 - 33,530,151
singlet/doubletsinglet
Overlap genenone
Upstream geneSema5a, LOC100040962, Sdc2, Pgcp, 1700084J12Rik
Downstream geneTspyl5, LOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124J02.bB6Ng01-124J02.g
ACCDH927442DH927443
length1,1791,104
definitionDH927442|Mus musculus domesticus DNA, BAC clone: B6Ng01-124J02, 5' end.DH927443|Mus musculus domesticus DNA, BAC clone: B6Ng01-124J02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggacaggtaaagatcctttcccaatctgtaggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcaaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaatttgc
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtggattcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatctgccgattgccctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttctatctt
ctgaaattccaccagagaacttcctaagcctgataaacagcttcagtgaa
gtagctgggatataaaataaactcaaacaaatcaatgggcctttctctac
acaaagaataaacggctgagaaagaaaattagggaaacaacacccttctc
aatagtcacaaataataataaaaaaaccttggcgtgactctactaaggga
agttgaagaatctgtatggataaggaacttcagtcctctaaagaaaggaa
atcaaggcttgaattaacctgtgatagataatggtaattttaattcagaa
cttctctcccaaatcaggcctttaaggtg

gaattcttgaggagagccagatattcttcagtattattaattactaatat
tatggtggctattccagatctattacagtacctacaagattacctgcaag
tgtgatgtccttcagaaagccttgtcatatttttcatatttaaagaacac
ttagctaggttttagaccttcacaatgaagccgaactttgctttaatttt
tttccttaattcaaagtaccagttagtatatcccaaagaatttccaagct
aaacttacctctgagcctctctcttaccatacaaagcatttctaataccc
actcttagtcaaccatgcaaagaaccaactagcattctttcagttaatcc
ttactcaatgcaatgaggcagatccgatattaatacccattttagaaatt
ggaaaacctaggtatatacctcataaataactacttcaagtgacagaatt
gataaaatatgattgaaacctataaaattaaattcaaatagcattcttat
acaaatagattttgtagctggtggccttcctagtctttatcggaaaaaaa
aaaaaaaaagaatgcaatttacaatctctttcctaccacaaagaacagaa
agtagcatttgaaaaccaccacatcttcactgagtgttgagatgccccac
tgtggtcccttggacatatatcatacacacacacacacacacacacacac
acacacacacactgggagattgcctgggtgcttccatccttcaccaaaag
ctatcacagtgtaattctgattgggtatcctcttctaggctaacaccagt
taggctcaaagaagaaaaacaaagaaagggtgacttcaggtaatgtcttt
aaaatgagatggcaggaatgctgtgtgaatggtactgacagtgcttcaga
gctggagatctgtactcaagagaagacaggccttaccaagcgttcctttc
agagagcatgaaagccataatctgtctacagaactattgtttccagcaca
ctgagcatcttctattttcttatgctctcatgttcccttcagcttgaaaa
ttatatagcacatattgcagcactgcacaggattgcatattaattacata
ttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_33528795_33530151
seq2: B6Ng01-124J02.g_68_1171

seq1  GAATTCTTGAGGAGAGCCAGATATTCTTCAGTATTATTAATTACTAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGGAGAGCCAGATATTCTTCAGTATTATTAATTACTAATAT  50

seq1  TATGGTGGCTATTCCAGATCTATTACAGTACCTACAAGATTACCTGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGCTATTCCAGATCTATTACAGTACCTACAAGATTACCTGCAAG  100

seq1  TGTGATGTCCTTCAGAAAGCCTTGTCATATTTTTCATATTTAAAGAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTCCTTCAGAAAGCCTTGTCATATTTTTCATATTTAAAGAACAC  150

seq1  TTAGCTAGGTTTTAGACCTTCACAATGAAGCCGAACTTTGCTTTAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAGGTTTTAGACCTTCACAATGAAGCCGAACTTTGCTTTAATTTT  200

seq1  TTTCCTTAATTCAAAGTACCAGTTAGTATATCCCAAAGAATTTCCAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAATTCAAAGTACCAGTTAGTATATCCCAAAGAATTTCCAAGCT  250

seq1  AAACTTACCTCTGAGCCTCTCTCTTACCATACAAAGCATTTCTAATACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACCTCTGAGCCTCTCTCTTACCATACAAAGCATTTCTAATACCC  300

seq1  ACTCTTAGTCAACCATGCAAAGAACCAACTAGCATTCTTTCAGTTAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGTCAACCATGCAAAGAACCAACTAGCATTCTTTCAGTTAATCC  350

seq1  TTACTCAATGCAATGAGGCAGATCCGATATTAATACCCATTTTAGAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAATGCAATGAGGCAGATCCGATATTAATACCCATTTTAGAAATT  400

seq1  GGAAAACCTAGGTATATACCTCATAAATAACTACTTCAAGTGACAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCTAGGTATATACCTCATAAATAACTACTTCAAGTGACAGAATT  450

seq1  GATAAAATATGATTGAAACCTATAAAATTAAATTCAAATAGCATTCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATATGATTGAAACCTATAAAATTAAATTCAAATAGCATTCTTAT  500

seq1  ACAAATAGATTTTGTAGCTGGTGGCCTTCCTAGTCTTTATCGGAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGATTTTGTAGCTGGTGGCCTTCCTAGTCTTTATCGGAAAAAAA  550

seq1  AAAAAAAAAGAATGCAATTTACAATCTCTTTCCTACCACAAAGAACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAATGCAATTTACAATCTCTTTCCTACCACAAAGAACAGAA  600

seq1  AGTAGCATTTGAAAACCACCACATCTTCACTGAGTGTTGAGATGCCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATTTGAAAACCACCACATCTTCACTGAGTGTTGAGATGCCCCAC  650

seq1  TGTGGTCCCTTGGACATATATCATACACACACACACACACACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCCCTTGGACATATATCATACACACACACACACACACACACACAC  700

seq1  ACACACACACACT-GGAGATTGCCTGGGTGCTTCCATCCTTCACCAAAAG  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACTGGGAGATTGCCTGGGTGCTTCCATCCTTCACCAAAAG  750

seq1  CTATCACAGTGTAATTCTGATTGGGTATCCTCTTCTAGGCTAACACCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACAGTGTAATTCTGATTGGGTATCCTCTTCTAGGCTAACACCAGT  800

seq1  TAGGCTCAAAGAAG-AAAACAAAGAAAAGGGTGACTTCAGGTAATGTCTT  848
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  TAGGCTCAAAGAAGAAAAACAAAG-AAAGGGTGACTTCAGGTAATGTCTT  849

seq1  TAAAATGAGATGGCAGGAATGCTGTGTGAATGGTACTGACAGTGCTTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAGATGGCAGGAATGCTGTGTGAATGGTACTGACAGTGCTTCAG  899

seq1  AGCTGGAAGATCTGTACTCAAGAGAAGACAGGCCTTACCAAAGCGTTCCT  948
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCTGG-AGATCTGTACTCAAGAGAAGACAGGCCTTACC-AAGCGTTCCT  947

seq1  TTCAGAGAGCATGAAAGCCATAGATCCTTGTCTAACAGAACTATTGTTTC  998
      |||||||||||||||||||||| |||  ||||| ||||||||||||||| 
seq2  TTCAGAGAGCATGAAAGCCATA-ATC--TGTCT-ACAGAACTATTGTTT-  992

seq1  CCAGCAACACTGAGCATCTTCTATTTTCCTTATGCTCTTCATGTTCCCTT  1048
      ||||| ||||||||||||||||||||| ||||||||| ||||||||||||
seq2  CCAGC-ACACTGAGCATCTTCTATTTT-CTTATGCTC-TCATGTTCCCTT  1039

seq1  CAGCCTCTGGAGATATTAATAAATTAGCACAATATTTGCAGCACTGCACA  1098
      |||| |     || | | |||   |||||| ||| |||||||||||||||
seq2  CAGCTT-----GAAAATTATA---TAGCAC-ATA-TTGCAGCACTGCACA  1079

seq1  ATGTGGTATTTTGCATAATTTAATATTTACAATATTAAATAACTTGTATT  1148
          ||    |||||||  ||||   |||| |||||||            
seq2  ----GG---ATTGCATA--TTAA---TTAC-ATATTAA------------  1104

seq1  CTTTATAAATTTGAGTATTAGCCTCAACATAATATTCTTGAAATGTGATT  1198
                                                        
seq2  --------------------------------------------------  1104

seq1  TCCATTATTGATATTACTAGATAGTTCGCCTGTCATAGCAGAAATATAAA  1248
                                                        
seq2  --------------------------------------------------  1104

seq1  CAGCTTTATTTTAGAAACTTAATTTCTTAACAAATGTTTTAAAATTTAAA  1298
                                                        
seq2  --------------------------------------------------  1104

seq1  TGGAAAATGTTTACTTTACTTAAGTCTTTATTTTAAAAATTGATATTAAT  1348
                                                        
seq2  --------------------------------------------------  1104

seq1  TACAATTAA  1357
               
seq2  ---------  1104


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