BAC Information

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BAC

Clone NameB6Ng01-125A16
Chromosome15 (Build37)
Map Location 55,203,575 - 55,354,380
singlet/doubletdoublet
Overlap geneCol14a1
Upstream geneColec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6
Downstream geneMrpl13, Mtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125A16.bB6Ng01-125A16.g
ACCDH927791DH927792
length9691,032
definitionDH927791|Mus musculus domesticus DNA, BAC clone: B6Ng01-125A16, 5' end.DH927792|Mus musculus domesticus DNA, BAC clone: B6Ng01-125A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,203,575 - 55,204,546)(55,353,344 - 55,354,380)
sequence
gaattcactgtgtagaccaagctagccttgcattcacagagatctacttg
cctttgcctcccaagtgctgacattaaaggtgtgtgccatgacactcagc
tatattcttccttttgtaattaaaaaaattgctcagttgaataaataatg
tacattcaatatattcctctaaatccaactaccctggctttttaccacct
tcctttgtgactctcctttttttccctttgaaattttggtttgtattttc
atgtatttacaaacagggttttatatgtgcctatgtaactaaaatctagg
acaataagtgaaagaatacattattcgcctttcagagactggcttaatta
atatgattatctccatttatatccattttttcctgtaaatgacataactt
aattactctctgtggctgaaaaatgttgtgttgtgtgtacatgtcattgg
atgcatagttgaaccatccaagtagagggtgctttggttgagtgggttaa
ccccctacagctgcatcagcatcaccatccttcctgttatcctcaatggc
aggggttaaaaatgccgacctgagtgagctgcaggagatcgcctctgagc
cagacagcacccatgtgtacaatgttgctgagttcgacctgatgcacaca
gtggtggagagcctgacccggactgtatgctctagagtggaagagcagga
caaggagattaaaggtaagagaggacagagagacccaagggatgtgggca
tcacaacctgcacaggcctggcactgtcttcataggcctataaccacaca
cacactcacacactcacacacacactcacacacacacacactcatttctg
tagacatacccctgccccataatacttaaccataaaggggagaaagcgtg
cacaggtttatcatgctcacaggttcatgaccacgcacataagtcaatta
tggtgggcatggtgaggat
gaattcatttactgctctcctcatgcattctgagtctctctccacagttc
acatctcttttgttcttgttttcagcctcagacttaaatcagcaatgtta
gaggcatgcaaagatgacgccagaaagaaaaggcaaagaagaaaggaaag
gtcatcctgaagtttttgaaagaaacagagatcctaacaaatgtgatgga
gagtgtgaggaggaaagtttttccccatgataggatggcctgttactttc
agaaaatggcgtacacctataaaagagagacgtgcattcctgccaagata
aatgagccagtaaaacgtgctcctgagagtcagcttgtattacaggctgt
gtattataaacacacacatccagaatccgaggtacatcttttattctgaa
catggcactcaataaaaagccgagatgcagggtccaagtgatgacacacg
ctaagcaaatgagactttgctgttgcttaagtaaacatattcaagtcacc
aaatcaaagccaggtcatttgtgtgtgtgtgtgtgtgtgtgtgtgcaagc
caagactgctgtgaagagattagagtctctaatggcttcatctttttgta
aaaactgaaagtctttgaagtaacacagtattagaccatttgttcttacc
taactcatcaaaaacacacagactattcgtcttgatcgtcatcattaaat
gtcccagacagagggaaccggacagaagactgttatagagcaatgtatca
gctttccagctgcttaaattggaggagttctcccaggggattctaggttc
aactatgtggatatcccttgcattattgagcaattcctactccttgctgg
ccctgttttctgtggtaaatttcagctgggacataaaggtttacaggcta
cttctctctggcttctttcattacaccagaagctacttatttgcctggtc
atccaaggcacccacatacatgatgccgttggatcattttgtagcagact
tcttcttctctagtaacagaactaaggcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_55203575_55204546
seq2: B6Ng01-125A16.b_41_1009

seq1  GAATTCACTGTGTAGACCAAGCTAGCCTTGCATTCACAGAGATCTACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTAGACCAAGCTAGCCTTGCATTCACAGAGATCTACTTG  50

seq1  CCTTTGCCTCCCAAGTGCTGACATTAAAGGTGTGTGCCATGACACTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTCCCAAGTGCTGACATTAAAGGTGTGTGCCATGACACTCAGC  100

seq1  TATATTCTTCCTTTTGTAATTAAAAAAATTGCTCAGTTGAATAAATAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTTCCTTTTGTAATTAAAAAAATTGCTCAGTTGAATAAATAATG  150

seq1  TACATTCAATATATTCCTCTAAATCCAACTACCCTGGCTTTTTACCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCAATATATTCCTCTAAATCCAACTACCCTGGCTTTTTACCACCT  200

seq1  TCCTTTGTGACTCTCCTTTTTTTCCCTTTGAAATTTTGGTTTGTATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTGACTCTCCTTTTTTTCCCTTTGAAATTTTGGTTTGTATTTTC  250

seq1  ATGTATTTACAAACAGGGTTTTATATGTGCCTATGTAACTAAAATCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTACAAACAGGGTTTTATATGTGCCTATGTAACTAAAATCTAGG  300

seq1  ACAATAAGTGAAAGAATACATTATTCGCCTTTCAGAGACTGGCTTAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAGTGAAAGAATACATTATTCGCCTTTCAGAGACTGGCTTAATTA  350

seq1  ATATGATTATCTCCATTTATATCCATTTTTTCCTGTAAATGACATAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTATCTCCATTTATATCCATTTTTTCCTGTAAATGACATAACTT  400

seq1  AATTACTCTCTGTGGCTGAAAAATGTTGTGTTGTGTGTACATGTCATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTCTCTGTGGCTGAAAAATGTTGTGTTGTGTGTACATGTCATTGG  450

seq1  ATGCATAGTTGAACCATCCAAGTAGAGGGTGCTTTGGTTGAGTGGGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAGTTGAACCATCCAAGTAGAGGGTGCTTTGGTTGAGTGGGTTAA  500

seq1  CCCCCTACAGCTGCATCAGCATCACCATCCTTCCTGTTATCCTCAATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTACAGCTGCATCAGCATCACCATCCTTCCTGTTATCCTCAATGGC  550

seq1  AGGGGTTAAAAATGCCGACCTGAGTGAGCTGCAGGAGATCGCCTCTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTAAAAATGCCGACCTGAGTGAGCTGCAGGAGATCGCCTCTGAGC  600

seq1  CAGACAGCACCCATGTGTACAATGTTGCTGAGTTCGACCTGATGCACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCACCCATGTGTACAATGTTGCTGAGTTCGACCTGATGCACACA  650

seq1  GTGGTGGAGAGCCTGACCCGGACTGTATGCTCTAGAGTGGAAGAGCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGAGAGCCTGACCCGGACTGTATGCTCTAGAGTGGAAGAGCAGGA  700

seq1  CAAGGAGATTAAAGGTAAGAGAGGACAGAGAGACCCAAGGGATGTGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGATTAAAGGTAAGAGAGGACAGAGAGACCCAAGGGATGTGGGCA  750

seq1  TCACAACCTGCACAGGCCTGGCACTGTCTTCATAGGCCTATAACCACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCTGCACAGGCCTGGCACTGTCTTCATAGGCCTATAACCACACA  800

seq1  CACACACACACACACACACACACACACACACACACACACACACATTTCTG  850
      ||||| ||||||| ||||||||||| ||||||||||||||| ||||||||
seq2  CACACTCACACACTCACACACACACTCACACACACACACACTCATTTCTG  850

seq1  TAGACATACCCCTGCCACCATAAACACTTAACCATAAAGGGGAGAAAGCG  900
      |||||||||||||||| |||| || |||||||||||||||||||||||||
seq2  TAGACATACCCCTGCC-CCAT-AATACTTAACCATAAAGGGGAGAAAGCG  898

seq1  TGCACAGGTTTATCATGCTCACAGGTTCATGACCACGCACATAAGTCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGTTTATCATGCTCACAGGTTCATGACCACGCACATAAGTCAAT  948

seq1  TATGGTGGGCATAGGTGTGGAT  972
      |||||||||||| |||| ||||
seq2  TATGGTGGGCAT-GGTGAGGAT  969

seq1: chr15_55353344_55354380
seq2: B6Ng01-125A16.g_66_1097 (reverse)

seq1  TGCTGCCTTTGGTTTCTGTTACTAGAG-AGAAGAAGTCTTGCTAACAAAT  49
      ||||||||| |  |||||||||||||| |||||||||| |||||  ||||
seq2  TGCTGCCTTAG--TTCTGTTACTAGAGAAGAAGAAGTC-TGCTACAAAAT  47

seq1  GATCCAACCGGCATCATGTATGTGGGTGCCTTGGATGACCCAGGCAAATA  99
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  GATCCAA-CGGCATCATGTATGTGGGTGCCTTGGATGA-CCAGGCAAATA  95

seq1  AGTAGCTTTCTGGTGTAATGAAGGAAGCCAGAGAGCATGTAGCCTGTAAA  149
      |||||| ||||||||||||||| |||||||||||| | ||||||||||||
seq2  AGTAGC-TTCTGGTGTAATGAAAGAAGCCAGAGAG-AAGTAGCCTGTAAA  143

seq1  CCTTTATGTCCCAGCTGAAATTTACCACAGAAAAACAGGGCCAGCAAGGA  199
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTTTATGTCCCAGCTGAAATTTACCACAG-AAAACAGGGCCAGCAAGGA  192

seq1  GTAGGAATTGCTCAATAATGCAAGGGATATCCACATAGTTGAACCTAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATTGCTCAATAATGCAAGGGATATCCACATAGTTGAACCTAGAA  242

seq1  TCCCCTGGGAGAACTCCTCCAATTTAAGCAGCTGGAAAGCTGATACATTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGGGAGAACTCCTCCAATTTAAGCAGCTGGAAAGCTGATACATTG  292

seq1  CTCTATAACAGTCTTCTGTCCGGTT-CCTCTGTCTGGGACATTTAATGAT  348
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCTATAACAGTCTTCTGTCCGGTTCCCTCTGTCTGGGACATTTAATGAT  342

seq1  GACGATCAAGACGAATAGTCTGTGTGTTTTTGATGAGTTAGGTAAGAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATCAAGACGAATAGTCTGTGTGTTTTTGATGAGTTAGGTAAGAACA  392

seq1  AATGGTCTAATACTGTGTTACTTCAAAGACTTTCAGTTTTTAC-AAAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATGGTCTAATACTGTGTTACTTCAAAGACTTTCAGTTTTTACAAAAAGA  442

seq1  TGAAGCCATTAGAGACTCTAATCTCTTCACAGCAGTCTTGGCTTGCACAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCATTAGAGACTCTAATCTCTTCACAGCAGTCTTGGCTTGCACAC  492

seq1  ACACACACACACACACACACAAATGACCTGGCTTTGATTTGGTGACTTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACAAATGACCTGGCTTTGATTTGGTGACTTGA  542

seq1  ATATGTTTACTTAAGCAACAGCAAAGTCTCATTTGCTTAGCGTGTGTCAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTACTTAAGCAACAGCAAAGTCTCATTTGCTTAGCGTGTGTCAT  592

seq1  CACTTGGACCCTGCATCTCGGCTTTTTATTGAGTGCCATGTTCAGAATAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGACCCTGCATCTCGGCTTTTTATTGAGTGCCATGTTCAGAATAA  642

seq1  AAGATGTACCTCGGATTCTGGATGTGTGTGTTTATAATACACAGCCTGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTACCTCGGATTCTGGATGTGTGTGTTTATAATACACAGCCTGTA  692

seq1  ATACAAGCTGACTCTCAGGAGCACGTTTTACTGGCTCATTTATCTTGGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGCTGACTCTCAGGAGCACGTTTTACTGGCTCATTTATCTTGGCA  742

seq1  GGAATGCACGTCTCTCTTTTATAGGTGTACGCCATTTTCTGAAAGTAACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCACGTCTCTCTTTTATAGGTGTACGCCATTTTCTGAAAGTAACA  792

seq1  GGCCATCCTATCATGGGGAAAAACTTTCCTCCTCACACTCTCCATCACAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCCTATCATGGGGAAAAACTTTCCTCCTCACACTCTCCATCACAT  842

seq1  TTGTTAGGATCTCTGTTTCTTTCAAAAACTTCAGGATGACCTTTCCTTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGGATCTCTGTTTCTTTCAAAAACTTCAGGATGACCTTTCCTTTC  892

seq1  TTCTTTGCCTTTTCTTTCTGGCGTCATCTTTGCATGCCTCTAACATTGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCCTTTTCTTTCTGGCGTCATCTTTGCATGCCTCTAACATTGCT  942

seq1  GATTTAAGTCTGAGGCTGAAAACAAGAACAAAAGAGATGTGAACTGTGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAGTCTGAGGCTGAAAACAAGAACAAAAGAGATGTGAACTGTGGA  992

seq1  GAGAGACTCAGAATGCATGAGGAGAGCAGTAAATGAATTC  1037
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTCAGAATGCATGAGGAGAGCAGTAAATGAATTC  1032