BAC Information

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BAC

Clone NameB6Ng01-125N10
Chromosome3 (Build37)15 (Build37)
Map Location 60,383,083 - 60,384,24298,796,809 - 98,797,037
singlet/doubletsingletsinglet
Overlap geneMbnl1
Upstream geneEG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485
Downstream geneLOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125N10.bB6Ng01-125N10.g
ACCDH928363DH928364
length1,149967
definitionDH928363|Mus musculus domesticus DNA, BAC clone: B6Ng01-125N10, 5' end.DH928364|Mus musculus domesticus DNA, BAC clone: B6Ng01-125N10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,383,083 - 60,384,242)(98,796,809 - 98,797,037)
sequence
gaattcctgcctttctcctacatttccatttcttttttccaacttctcat
accaatgagcattcctccctttgaccttgtcatttgcattagaacacttg
cttctttggaccttagactatcatcaagggatcataacttttcatctagc
tccagaagtctaggagagctgaccaccttgaaggactcacttattcgctg
cctttagctcttgtcgatattgttttgcttttatagcatactgttaagca
tgggccaggcatgagcaccatgacagtctccaagaaaacacccttacaca
cttcagggcgttacagagtatatgtgagagccagaaaagcaaattgacca
atgaggtgttggcatcgtaattggaagcaatgagaaatagcacacagttg
cacgaggcgagctgaatgtctgtcccttcccacccccacctcataggctc
atagtagagcacattttgaaaattctgaggaattcattccaattctattt
tggtaggcaaggaaaatttagaaaattggtaataaagtattgccagtctc
tactgtcatctcaatgaatcacaaactttagcttcttttactgagcatgg
atacaaacacagaatcattgagtcccataattttgttttttaaaagtgta
tctgttcgtaatggagagaattgaaatttatacgtggcaggggtagcaaa
gtcatttctctttatagtatcaggttttaggaagctccattctcccaaaa
tatggcgctcattctctctaccaaaggagccatttcctgtcaatgtcaag
ggacaaatggccatgggtgttgactgttgaccaaccaaaaccagtgctgg
gcctttaggctctttcagtatagcagcacaactattcatggctcttttca
gcgcttctgatcctacctcctgctttaaactccaactcctgggcttccct
ctttcagcttccctctctccctctctgtctctggtggtctggactctttc
agatgctttggctggtgtcttcttcgtatctacataaagtcttcaatcac
aacactcgggagtaggtcaagtctttagtataatctaggtgcctaaccct
cagttatacatctggctggaggctctgggtggggagcacaatgggatcc
gaattctctcctctctttgtcttcagcatttatacatcttttagaataca
tgttcacatggtaaaaatttcgtcacaagtttacacataaattcaaatca
tagattaagaagtttgcaacagagaatgtttacatgcatatccattaggc
atacttatctggctaaacactcattatctgtcccaaggtcaacaggttca
tagagttaaaaaacataactctgtgattacgtattagtgaagttttgtat
agaaaaacccagtcagtattttaccttctgtctttgcacctatcataaat
tgctatttcccttttaatgacctttggataatggttttacagctttttgg
aatacctctgggtagtaaatgcctacttgctatttagaagcaattaacac
atgacactaaagactggaagagttctcattacagttttgattatcagagc
aaacctaataaaagtcccactataaaagaccttaataaatactgatataa
ttttaggaattcttataggatcatcattaagaatcaagaagtcatctatt
tgtctatatagcatcagtacaagacagtacatctttgttgtactgcagag
atctctcagaagagtgggctaatatctattgattgttacacatacttaat
aataacaggaaaggcatataaataacaggaatctttcctaaagagaattg
tttctgggcattgcctaacagagcaaatccatcatggattataattcaag
gcagactcatctcggatgatcacctgctgaattttagtttctcattggtt
atgcgcgcgcgcgcgcacgcacacacacacacacacacacacacacacac
acacaaacaccttttaatgtttctatatcttgaaggaacttttaaatata
aagacattttaaataaaagcaaaggggctggagagatggaatgctcagca
gtaagagccactatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_60383083_60384242
seq2: B6Ng01-125N10.b_48_1196

seq1  GAATTCCTGCCTTTCTCCTACATTTCCATTTCTTTTTTCCAACTTCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCTTTCTCCTACATTTCCATTTCTTTTTTCCAACTTCTCAT  50

seq1  ACCAATGAGCATTCCTCCCTTTGACCTTGTCATTTGCATTAGAACACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGAGCATTCCTCCCTTTGACCTTGTCATTTGCATTAGAACACTTG  100

seq1  CTTCTTTGGACCTTAGACTATCATCAAGGGATCATAACTTTTCATCTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGGACCTTAGACTATCATCAAGGGATCATAACTTTTCATCTAGC  150

seq1  TCCAGAAGTCTAGGAGAGCTGACCACCTTGAAGGACTCACTTATTCGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGTCTAGGAGAGCTGACCACCTTGAAGGACTCACTTATTCGCTG  200

seq1  CCTTTAGCTCTTGTCGATATTGTTTTGCTTTTATAGCATACTGTTAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCTCTTGTCGATATTGTTTTGCTTTTATAGCATACTGTTAAGCA  250

seq1  TGGGCCAGGCATGAGCACCATGACAGTCTCCAAGAAAACACCCTTACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAGGCATGAGCACCATGACAGTCTCCAAGAAAACACCCTTACACA  300

seq1  CTTCAGGGCGTTACAGAGTATATGTGAGAGCCAGAAAAGCAAATTGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGCGTTACAGAGTATATGTGAGAGCCAGAAAAGCAAATTGACCA  350

seq1  ATGAGGTGTTGGCATCGTAATTGGAAGCAATGAGAAATAGCACACAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGTTGGCATCGTAATTGGAAGCAATGAGAAATAGCACACAGTTG  400

seq1  CACGAGGCGAGCTGAATGTCTGTCCCTTCCCACCCCCACCTCATAGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGCGAGCTGAATGTCTGTCCCTTCCCACCCCCACCTCATAGGCTC  450

seq1  ATAGTAGAGCACATTTTGAAAATTCTGAGGAATTCATTCCAATTCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGAGCACATTTTGAAAATTCTGAGGAATTCATTCCAATTCTATTT  500

seq1  TGGTAGGCAAGGAAAATTTAGAAAATTGGTAATAAAGTATTGCCAGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGCAAGGAAAATTTAGAAAATTGGTAATAAAGTATTGCCAGTCTC  550

seq1  TACTGTCATCTCAATGAATCACAAACTTTAGCTTCTTTTACTGAGCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCATCTCAATGAATCACAAACTTTAGCTTCTTTTACTGAGCATGG  600

seq1  ATACAAACACAGAATCATTGAGTCCCATAATTTTGTTTTTTAAAAGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACACAGAATCATTGAGTCCCATAATTTTGTTTTTTAAAAGTGTA  650

seq1  TCTGTTCGTAATGGAGAGAATTGAAATTTATACGTGGCAGGGGTAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCGTAATGGAGAGAATTGAAATTTATACGTGGCAGGGGTAGCAAA  700

seq1  GTCATTTCTCTTTATAGTATCAGGTTTTAGGAAGCTCCATTCTCCCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCTCTTTATAGTATCAGGTTTTAGGAAGCTCCATTCTCCCAAAA  750

seq1  TATGGCGCTCATTCTCTCTACCAAAGGAGCCATTTCCTGTCAATGTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCGCTCATTCTCTCTACCAAAGGAGCCATTTCCTGTCAATGTCAAG  800

seq1  GGACAAATGGCCAATGGGTGTTGACTGTTGACCAACCAAAACCAGTGCT-  849
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  GGACAAATGGCC-ATGGGTGTTGACTGTTGACCAACCAAAACCAGTGCTG  849

seq1  GGCCTTTAGGCTCTTTCAGTATAGCAGCACAACTATTCATGGCTCTTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTAGGCTCTTTCAGTATAGCAGCACAACTATTCATGGCTCTTTTC  899

seq1  AGCGCTTCTGATCCTACCTCCTGCTTTAAACTCCAACTCCTGGGCTTCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTTCTGATCCTACCTCCTGCTTTAAACTCCAACTCCTGGGCTTCCC  949

seq1  TCTTTCAGCTTCCCTCTCTCCCTCTCTGTTCCTCTTGTGGTCTGGACTCT  999
      |||||||||||||||||||||||||||||  |||| ||||||||||||||
seq2  TCTTTCAGCTTCCCTCTCTCCCTCTCTGT--CTCTGGTGGTCTGGACTCT  997

seq1  TTCAGATGCCTTTGGCT-GTGTCCTTCTTCGTATCTACAATTAAAGTCTT  1048
      |||||||| |||||||| |||| ||||||||||||||||  ||||||| |
seq2  TTCAGATG-CTTTGGCTGGTGT-CTTCTTCGTATCTACA--TAAAGTC-T  1042

seq1  TCCATCAACAACACTTCGGAGTA-GTCAAGTCTTTAGTTTATAAATCTA-  1096
      || ||| ||||||||  |||||| |||||||||||||| |   |||||| 
seq2  TCAATC-ACAACACTCGGGAGTAGGTCAAGTCTTTAGTAT---AATCTAG  1088

seq1  GTGCCTAAACCCTCAGTTTATACATCTGGTCCTGAAAGCTCTGGGT-GGG  1145
      |||||| ||||||||| ||||||||||||  ||| | ||||||||| |||
seq2  GTGCCT-AACCCTCAG-TTATACATCTGG--CTGGAGGCTCTGGGTGGGG  1134

seq1  AGCACAAATGGATCC  1160
      |||||||  ||||||
seq2  AGCACAATGGGATCC  1149

seq1: chr15_98796809_98797037
seq2: B6Ng01-125N10.g_876_1027

seq1  GCGCGCGCGCGCGCACACACACACACACACACACACACACACACTGAGTA  50
      |||||||||| |||||||||||||||||||||||||||||||||  |   
seq2  GCGCGCGCGCACGCACACACACACACACACACACACACACACACACA---  47

seq1  TGGCAGCATAGTCCTATAATTCCAGTATTCAGAAGTAGAAGCTGGAGCAT  100
            || |  ||| | | |   || |||     || |   ||      
seq2  ------CAAACACCTTTTAAT---GT-TTC-----TATATCTTG------  76

seq1  AAGGAATTCAAGGTCATCTTCTGCTACATAGGGAGTCTGAGGCTGCTCTG  150
      ||||||              ||  || |||                    
seq2  AAGGAA--------------CTTTTAAATA--------------------  92

seq1  GGCTAGATGAGATCCTGTCTCCAAAACAAGAGAAATAACAACCATGGAGG  200
         ||                 || |||    |||||| | | | |  ||
seq2  ---TA-----------------AAGACATTTTAAATAAAAGCAAAG--GG  120

seq1  GCTGGAGAGATG----GCTCGGCAGTAAAGAGC  229
      ||||||||||||    |||| ||||| ||||||
seq2  GCTGGAGAGATGGAATGCTCAGCAGT-AAGAGC  152