BAC Information

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BAC

Clone NameB6Ng01-125O07
Chromosome15 (Build37)
Map Location 6,231,927 - 6,337,777
singlet/doubletdoublet
Overlap geneDab2
Upstream geneLOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
Downstream geneC9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr, Lifr, Egflam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125O07.bB6Ng01-125O07.g
ACCDH928402DH928403
length1,1041,140
definitionDH928402|Mus musculus domesticus DNA, BAC clone: B6Ng01-125O07, 5' end.DH928403|Mus musculus domesticus DNA, BAC clone: B6Ng01-125O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,231,927 - 6,233,048)(6,336,613 - 6,337,777)
sequence
gaattcaattcccagcaaccacatggtagcttacatccatctgtaatggg
atctgatgctcttttctgatatgtctgaagacatatacagtgtacttata
tacataaaataaataaataatttttaaaaagaatgactcaaggattgctg
aaacaagagtagtacattccaatggactctggtaatatcaataggatggt
aggcatgtattacctggtttattaagtatggaaaccataaggaatatatc
aacatcaaagagtacagtaagttcttatattaaaatcaattgcacaattt
aaaatgtttagatccttaactaaactgccagaaattaatttttccacatc
tactacaaaaaaaatcaccttagagagtttgttcgagctgaacatagatc
aactttgtagagtcttgtgtggtaggtaaatatgaaaatattaggctttg
cattgttattaatatgattattgaaatgttaatcaataattgtttattag
ccaggcatgtgtaacaacttcctccatccccagagcaactaataaaatag
atagataagtaattaataaatatagatctctaatattacttatcacattc
tgatagaaaaatgaaagagtaagatgtcggggttttgacagcattatcaa
aggcagccagaatgaaaccattcacagaagtgatgctttccaaagactga
ataatgaacaggaaacttgtgctggttgctattttgtgaactgaacaaaa
actagagtcacctgaaaagcaggaacctcaattagggaattacttccatc
agactggcctgtacccatatctgtgggtccctttcttggttgatgattga
tgtggaagagccctgcccactttgggatgtgccattcctaacaggaggtt
gtagtttgtatagggtactgagcccagcaaaccatgggaaggtaaccagt
aggcagtgtcgccatggtctctgcctcggttctgactctaggctcttcta
ccttgattcagccctaatccctcagtagtcagttgtaactgggattagag
atgaataaaccattcctcccaagttgtttttgttagtgttagtcaaatac
agaa

gaattccagactcaggattaagtggaggagagcaggcaggaagaaataac
agccagctctatgccgcaaagagaaccgctacgttggcagggtctccaag
gttttaaacacagtttagtccctcttcttgaattcttaatccttccaaat
aatttacaacagtcaagaaaaacagcattcaaacgcttcacgatttaaaa
caagtttgttacgtggcttgggcagatacttttcttaggaatgctggtat
aagacaaagttcacatttttaatgccctgtgctgtcagtcagcagaaaat
agctcctcggaggcacagaccatgtccccagcctttgtcgcacagtaaaa
ctgaacatcattcaggagtttattaggtggtcagcagccacaccgcgcat
tccctgggatgtcccctaagccctaaaaactagggctcgtgtacaacaca
cacacacacacacacacacacacacacacacacacacacacacacacaca
gggactcgttaaatgtcacaggatgggcgccttgagtccgaccccaaagg
taaaatgcattccttggaagcattccacagatgtcaggccacaaaacccg
ctgctctccccggagtacactgtctcatttgtaagatttccccagcgccc
aaggtctgcagccaaggcagggatgggaagagaggagccagcaaaggaga
gaagtaggtcgcaaaaaaagaaaaaaaaagaaaaaaaaagaaaaaaaagg
aaaaaagagaaagaaagaaagaaagaagaagaagaagaagaagaagaaag
aagaggacgaaggaagggggtggcagagttctcacggactagctagtgct
tctgtggagccagcatgacttccccgcgcccgaagcttctaggctgcagc
gccgaggacgcggagaacgccacttaaatagccgcgcggccactcccggt
agagatatggttcctatcagatgctggctctgagactctcaagaatgtgg
cggcgggatgttttgctgctggacttggtaactccccctcacgtgtctgc
gagtcttcaaacttaactgtttattaactcgaactaagcctgagatccgg
cccctcctggccctctgccccgtgccccgccagctggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_6231927_6233048
seq2: B6Ng01-125O07.b_50_1153

seq1  GAATTCAATTCCCAGCAACCACATGGTAGCTTACATCCATCTGTAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCAACCACATGGTAGCTTACATCCATCTGTAATGGG  50

seq1  ATCTGATGCTCTTTTCTGATATGTCTGAAGACATATACAGTGTACTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGCTCTTTTCTGATATGTCTGAAGACATATACAGTGTACTTATA  100

seq1  TACATAAAATAAATAAATAATTTTTAAAAAGAATGACTCAAGGATTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAATAAATAAATAATTTTTAAAAAGAATGACTCAAGGATTGCTG  150

seq1  AAACAAGAGTAGTACATTCCAATGGACTCTGGTAATATCAATAGGATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAGTAGTACATTCCAATGGACTCTGGTAATATCAATAGGATGGT  200

seq1  AGGCATGTATTACCTGGTTTATTAAGTATGGAAACCATAAGGAATATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGTATTACCTGGTTTATTAAGTATGGAAACCATAAGGAATATATC  250

seq1  AACATCAAAGAGTACAGTAAGTTCTTATATTAAAATCAATTGCACAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAAAGAGTACAGTAAGTTCTTATATTAAAATCAATTGCACAATTT  300

seq1  AAAATGTTTAGATCCTTAACTAAACTGCCAGAAATTAATTTTTCCACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTAGATCCTTAACTAAACTGCCAGAAATTAATTTTTCCACATC  350

seq1  TACTACAAAAAAAATCACCTTAGAGAGTTTGTTCGAGCTGAACATAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAAAAAAAATCACCTTAGAGAGTTTGTTCGAGCTGAACATAGATC  400

seq1  AACTTTGTAGAGTCTTGTGTGGTAGGTAAATATGAAAATATTAGGCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTAGAGTCTTGTGTGGTAGGTAAATATGAAAATATTAGGCTTTG  450

seq1  CATTGTTATTAATATGATTATTGAAATGTTAATCAATAATTGTTTATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTATTAATATGATTATTGAAATGTTAATCAATAATTGTTTATTAG  500

seq1  CCAGGCATGTGTAACAACTTCCTCCATCCCCAGAGCAACTAATAAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATGTGTAACAACTTCCTCCATCCCCAGAGCAACTAATAAAATAG  550

seq1  ATAGATAAGTAATTAATAAATATAGATCTCTAATATTACTTATCACATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAGTAATTAATAAATATAGATCTCTAATATTACTTATCACATTC  600

seq1  TGATAGAAAAATGAAAGAGTAAGATGTCGGGGTTTTGACAGCATTATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAAAAATGAAAGAGTAAGATGTCGGGGTTTTGACAGCATTATCAA  650

seq1  AGGCAGCCAGAATGAAACCATTCACAGAAGTGATGCTTTCCAAAGACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCAGAATGAAACCATTCACAGAAGTGATGCTTTCCAAAGACTGA  700

seq1  ATAATGAACAGGAAACTTGTGCTGGTTGCTATTTTGTGAACTGAACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAACAGGAAACTTGTGCTGGTTGCTATTTTGTGAACTGAACAAAA  750

seq1  ACTAGAGTCACCTGAAAAGCAGGAACCTCAATTAGGGAATTACTTCCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGTCACCTGAAAAGCAGGAACCTCAATTAGGGAATTACTTCCATC  800

seq1  AGACTGGCCTGTACCCATATCTGTGGGTCCCTTTCTTGGTTGATGATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCCTGTACCCATATCTGTGGGTCCCTTTCTTGGTTGATGATTGA  850

seq1  TGTGGAAGAGCCCTGCCCACTTTGGGATGTGCCATTCCTAAACAGGAGGT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTGGAAGAGCCCTGCCCACTTTGGGATGTGCCATTCCT-AACAGGAGGT  899

seq1  TGTAGTTTGTATAGGGTACTGAGCCCAGCAAACCATGGGAAGGTAACCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTGTATAGGGTACTGAGCCCAGCAAACCATGGGAAGGTAACCAG  949

seq1  TAGGCAGTGTTCGCCCATGGTCTCTGCCTCGGTTCCTGACTCTAGGCTCC  1000
      ||||||||| ||| |||||||||||||||||||| ||||||||||||| |
seq2  TAGGCAGTG-TCG-CCATGGTCTCTGCCTCGGTT-CTGACTCTAGGCT-C  995

seq1  TCCTACCTTGATTCCAGCCCTAAATCCCCTCAGTAGTCAGTTGTAACCTG  1050
      | ||||||||||| |||||||||   |||||||||||||||||||| |||
seq2  TTCTACCTTGATT-CAGCCCTAA--TCCCTCAGTAGTCAGTTGTAA-CTG  1041

seq1  GGATTTAGAAGATGAAATAAACCCATTCTTCCCCAAGTTGTTTTTGTTCA  1100
      ||| |||| ||||| |||||| |||||| | ||||||||||||||||| |
seq2  GGA-TTAG-AGATG-AATAAA-CCATTCCT-CCCAAGTTGTTTTTGTT-A  1085

seq1  GTGTTTAGTCAAAATAACAGAA  1122
      ||| |||||||||   ||||||
seq2  GTG-TTAGTCAAA--TACAGAA  1104


seq1: chr15_6336613_6337777
seq2: B6Ng01-125O07.g_68_1207 (reverse)

seq1  CCCCCAGCTGGCCGGGCGCACGGGGCGCAGGAGGCGCAGGAGGCGCCGGA  50
      ||||||||||||  || |||||||||    ||||  ||||||| ||||||
seq2  CCCCCAGCTGGC--GGGGCACGGGGC---AGAGGGCCAGGAGGGGCCGGA  45

seq1  TCTCCGTGGCTTTAGTTCGAGTTAATAAACAGTTAAGTTTGGAAGACTCG  100
      ||||   ||| ||||||||||||||||||||||||||||| |||||||| 
seq2  TCTC--AGGC-TTAGTTCGAGTTAATAAACAGTTAAGTTT-GAAGACTC-  90

seq1  GCAGACACGTTGAGGGGGAGTTACCAAGTCCAGGCAGCAAAAACATCCCG  150
      ||||||||| |||||||||||||||||||||| ||||| |||||||||||
seq2  GCAGACACG-TGAGGGGGAGTTACCAAGTCCA-GCAGC-AAAACATCCCG  137

seq1  CCGCCACATTCCTGGAGAGTCCTCAGAGCCAGCATCTGATTAGAACCATA  200
      |||||||||| || |||||| |||||||||||||||||||  ||||||||
seq2  CCGCCACATT-CTTGAGAGT-CTCAGAGCCAGCATCTGATAGGAACCATA  185

seq1  TCTCTACCGGGAGTGGCCGCGCGGCTATTTAAGTGGCGTTCTCCGCGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCGGGAGTGGCCGCGCGGCTATTTAAGTGGCGTTCTCCGCGTCC  235

seq1  TCGGCGCTGCAGCCTTGAGGCTTCGGGCGCGGGGAAGTCATGCTGGCTCC  300
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  TCGGCGCTGCAGCCTAGAAGCTTCGGGCGCGGGGAAGTCATGCTGGCTCC  285

seq1  ACAGAAGCACTAGCTAGTCCGTGAGTAACTCTGCCATCCCCCTTCCCTTC  350
      ||||||||||||||||||||||||| |||||||||| ||||||| |||||
seq2  ACAGAAGCACTAGCTAGTCCGTGAG-AACTCTGCCA-CCCCCTT-CCTTC  332

seq1  GGTCCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  400
      |  | ||||||||     |||||   |||||   |||||   ||||||||
seq2  GTCCTCTTCTTTC-----TTCTT--CTTCTT--CTTCTT--CTTCTTTCT  371

seq1  TTCTTTCTTTCTCTTTTTTTCCTTTTTTTTCTTTTTTTTTC-TTTTTTTT  449
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  TTCTTTCTTTCTC-TTTTTTCCTTTTTTTTCTTTTTTTTTCTTTTTTTTT  420

seq1  CTTTTTTTGCGACCTACTTCTCTCCTTTGCTGGCTCCTCTCTTCCCATCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTGCGACCTACTTCTCTCCTTTGCTGGCTCCTCTCTTCCCATCC  470

seq1  CTGCCTTGGCTGCAGACCTTGGGCGCTGGGGAAATCTTACAAATGAGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGGCTGCAGACCTTGGGCGCTGGGGAAATCTTACAAATGAGACA  520

seq1  GTGTACTCCGGGGAGAGCAGCGGGTTTTGTGGCCTGACATCTGTGGAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTCCGGGGAGAGCAGCGGGTTTTGTGGCCTGACATCTGTGGAATG  570

seq1  CTTCCAAGGAATGCATTTTACCTTTGGGGTCGGACTCAAGGCGCCCATCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGGAATGCATTTTACCTTTGGGGTCGGACTCAAGGCGCCCATCC  620

seq1  TGTGACATTTAACGAGTCCC----TGTGTGTGTGTGTGTGTGTGTGTGTG  695
      ||||||||||||||||||||    ||||||||||||||||||||||||||
seq2  TGTGACATTTAACGAGTCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  670

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTTGTACACGAGCCCTAGTTTTTAGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTTGTACACGAGCCCTAGTTTTTAGGG  720

seq1  CTTAGGGGACATCCCAGGGAATGCGCGGTGTGGCTGCTGACCACCTAATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGGACATCCCAGGGAATGCGCGGTGTGGCTGCTGACCACCTAATA  770

seq1  AACTCCTGAATGATGTTCAGTTTTACTGTGCGACAAAGGCTGGGGACATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGAATGATGTTCAGTTTTACTGTGCGACAAAGGCTGGGGACATG  820

seq1  GTCTGTGCCTCCGAGGAGCTATTTTCTGCTGACTGACAGCACAGGGCATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGCCTCCGAGGAGCTATTTTCTGCTGACTGACAGCACAGGGCATT  870

seq1  AAAAATGTGAACTTTGTCTTATACCAGCATTCCTAAGAAAAGTATCTGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTGAACTTTGTCTTATACCAGCATTCCTAAGAAAAGTATCTGCC  920

seq1  CAAGCCACGTAACAAACTTGTTTTAAATCGTGAAGCGTTTGAATGCTGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCACGTAACAAACTTGTTTTAAATCGTGAAGCGTTTGAATGCTGTT  970

seq1  TTTCTTGACTGTTGTAAATTATTTGGAAGGATTAAGAATTCAAGAAGAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGACTGTTGTAAATTATTTGGAAGGATTAAGAATTCAAGAAGAGG  1020

seq1  GACTAAACTGTGTTTAAAACCTTGGAGACCCTGCCAACGTAGCGGTTCTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAACTGTGTTTAAAACCTTGGAGACCCTGCCAACGTAGCGGTTCTC  1070

seq1  TTTGCGGCATAGAGCTGGCTGTTATTTCTTCCTGCCTGCTCTCCTCCACT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGGCATAGAGCTGGCTGTTATTTCTTCCTGCCTGCTCTCCTCCACT  1120

seq1  TAATCCTGAGTCTGGAATTC  1165
      ||||||||||||||||||||
seq2  TAATCCTGAGTCTGGAATTC  1140


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