BAC Information

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BAC

Clone NameB6Ng01-126D12
Chromosome15 (Build37)13 (Build37)
Map Location 32,966,588 - 32,967,70829,331,232 - 29,331,796
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962, Sdc2
Downstream genePgcp, 1700084J12Rik, Tspyl5, LOC675463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126D12.bB6Ng01-126D12.g
ACCDH928648DH928649
length1,109946
definitionDH928648|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D12, 5' end.DH928649|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,966,588 - 32,967,708)(29,331,232 - 29,331,796)
sequence
gaattcacaccagcagtgggtacaccccttcttcaccaatggctcaactt
tctcttagatacttagctttcctcatttcctgttcttccaaacttttagc
aacatcttgtggttttaactctccaaataataaaatacctctccatttag
actgctccttttctaaagtcactatgtttctcctgagaagataataatga
cctcctaactgcaaccatggaatctacttacatgcatgcagggagaagtt
ctgttaggtcttgaagtcaaggtaatcagcaggggctttattctaagcct
gcagagaccattggaatttaatgaggccagtctatcttccctgaggagag
taatatataagagagcaaacactggaaggagagaccagctaggaagtaat
tctacttctcagcttccttctctcaactcttctcactaattcctacctct
cagcaatttatttgtaatccccgttcctctaacaggccaagaccataccc
tttctatggctttcctatcacctggaaggcctgctcgctctggttttagc
aaacctgaatctgtatccccaagaccttgcactctggatcttttctgatc
ataatattcatgacagctgtacacatctctcttcttttagccacaaagta
ggagtgtatgtctctgttccttaagtacagtatatgacttgattttgcca
ataaaattgtggtgctttggtccttttccttctactccataattgtccat
gttgagataatggatactctaaaaggccatcatccagagcccttgagtgt
ggacagcaatcgtctaaagcacaatttgccagcttatctggagctagcca
tctgttgggggcatatccccacagccttagcacttgagagttgaaggtag
gaagagtggaagtggaaggataaattaatcctcactgcacaggagtttga
gaccagctttggctgcatagattcttacaacaaacaaacaaacacatatt
aaacaacaacaaaagcaaacgaaaggttggtgtttgagtgactgagaact
ttgagatccttaccacagctactgaggtcctccttattcttagttctcag
aagtgcatt
gaattcctgatctttccaaaacttttatcatgaatgctgttggatcttgt
caaatgctttttctgcatctaacgagatgatcatgtggtttttgtctttg
agtttgtttatataatggattacattgatggattttcgtatattaaacca
tccctgcatccctggaataaaacctacttggtcaggatggatgattgctt
taatatgttcttggatttggttagcgagaattttattgaggatttttgca
tcgatattcataagagaaattggtctgaagttctctatctttgttgggtc
tttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttgg
gtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgga
attagatcttctttgaaggtctgatagaactctgcactaaacccgtctgg
tcctgggctttttttggctgggagactattaataactgcttctatttctt
caggtgatatgggactgtttagatggtcaacttgatcctgattcaacttt
ggtacctggtatctgtccagaaatttgtccatttcgtccaggttttccag
atttgttgagtatagccttttgtagaaggatctgatggtgttttggattt
tttcaggatctgttgttatgtctcccttttcagttctgattttgttaatt
aggattttgtccctgtgccctttagtgagtctagctaagggtttatctat
cttgttgattttctcaaagaaccagcctcctcgtttggttgattctttga
atagtttctggttccacttggtttaatttcaccctggagttggattattt
cctgccgtctactctcttgggtgaattgcttccttttttttctgagcttt
tagatgtgttttcaagctgctagtatgtgctctctcccggtttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32966588_32967708
seq2: B6Ng01-126D12.b_47_1155 (reverse)

seq1  AATGCAC-TCTGAAGGACTAAGAATAGGGAGGGACTCAGTAGGCTGTGGT  49
      ||||||| |||| || |||||||||| |||||  ||||||| ||||||||
seq2  AATGCACTTCTG-AGAACTAAGAATAAGGAGGACCTCAGTA-GCTGTGGT  48

seq1  AAGGATCTCAAAG-TCTCAGTCACTTCAAACACCAAACCTTTTCGTTTGC  98
      ||||||||||||| |||||||||| |||||||||||  | ||||||||||
seq2  AAGGATCTCAAAGTTCTCAGTCAC-TCAAACACCAA--CCTTTCGTTTGC  95

seq1  TTTTTGTTTGTTTGTTTTATTATTGTTGTTTGTTTGTTTGTTTGTAGAAT  148
      ||||   |||||   |||| |||   ||||||||||||||||   |||||
seq2  TTTT--GTTGTT--GTTTAATAT--GTGTTTGTTTGTTTGTTGTAAGAAT  139

seq1  CTTATGCAGCCAAAGCTGGTCTCAAACTCCCTGTGCAGTGAGGATTAATT  198
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  C-TATGCAGCCAAAGCTGGTCTCAAACT-CCTGTGCAGTGAGGATTAATT  187

seq1  TATCCTTCCACCTTCCACTCTTCCTACCTTCAACTCTCAAGTGCTAAGGC  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTCCA-CTTCCACTCTTCCTACCTTCAACTCTCAAGTGCTAAGGC  236

seq1  TGTGGGGATATGCCCCCAACAGATGGCTAGCTCCAGATAAGCTGGCAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGATATGCCCCCAACAGATGGCTAGCTCCAGATAAGCTGGCAAAT  286

seq1  TGTGCTTTAGACGATTGCTGTCCACACTCAAGGGCTCTGGATGATGGCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTAGACGATTGCTGTCCACACTCAAGGGCTCTGGATGATGGCCT  336

seq1  TTTAGAGTATCCATTATCTCAACATGGACAATTATGGAGTAGAAGGAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTATCCATTATCTCAACATGGACAATTATGGAGTAGAAGGAAAA  386

seq1  GGACCAAAGCACCACAATTTTATTGGCAAAATCAAGTCATATACTGTACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAAGCACCACAATTTTATTGGCAAAATCAAGTCATATACTGTACT  436

seq1  TAAGGAACAGAGACATACACTCCTACTTTGTGGCTAAAAGAAGAGAGATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAACAGAGACATACACTCCTACTTTGTGGCTAAAAGAAGAGAGATG  486

seq1  TGTACAGCTGTCATGAATATTATGATCAGAAAAGATCCAGAGTGCAAGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGCTGTCATGAATATTATGATCAGAAAAGATCCAGAGTGCAAGGT  536

seq1  CTTGGGGATACAGATTCAGGTTTGCTAAAACCAGAGCGAGCAGGCCTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGATACAGATTCAGGTTTGCTAAAACCAGAGCGAGCAGGCCTTCC  586

seq1  AGGTGATAGGAAAGCCATAGAAAGGGTATGGTCTTGGCCTGTTAGAGGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATAGGAAAGCCATAGAAAGGGTATGGTCTTGGCCTGTTAGAGGAA  636

seq1  CGGGGATTACAAATAAATTGCTGAGAGGTAGGAATTAGTGAGAAGAGTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGATTACAAATAAATTGCTGAGAGGTAGGAATTAGTGAGAAGAGTTG  686

seq1  AGAGAAGGAAGCTGAGAAGTAGAATTACTTCCTAGCTGGTCTCTCCTTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGAAGCTGAGAAGTAGAATTACTTCCTAGCTGGTCTCTCCTTCC  736

seq1  AGTGTTTGCTCTCTTATATATTACTCTCCTCAGGGAAGATAGACTGGCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGCTCTCTTATATATTACTCTCCTCAGGGAAGATAGACTGGCCT  786

seq1  CATTAAATTCCAATGGTCTCTGCAGGCTTAGAATAAAGCCCCTGCTGATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATTCCAATGGTCTCTGCAGGCTTAGAATAAAGCCCCTGCTGATT  836

seq1  ACCTTGACTTCAAGACCTAACAGAACTTCTCCCTGCATGCATGTAAGTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGACTTCAAGACCTAACAGAACTTCTCCCTGCATGCATGTAAGTAG  886

seq1  ATTCCATGGTTGCAGTTAGGAGGTCATTATTATCTTCTCAGGAGAAACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGGTTGCAGTTAGGAGGTCATTATTATCTTCTCAGGAGAAACAT  936

seq1  AGTGACTTTAGAAAAGGAGCAGTCTAAATGGAGAGGTATTTTATTATTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTTAGAAAAGGAGCAGTCTAAATGGAGAGGTATTTTATTATTTG  986

seq1  GAGAGTTAAAACCACAAGATGTTGCTAAAAGTTTGGAAGAACAGGAAATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTAAAACCACAAGATGTTGCTAAAAGTTTGGAAGAACAGGAAATG  1036

seq1  AGGAAAGCTAAGTATCTAAGAGAAAGTTGAGCCATTGGTGAAGAAGGGGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCTAAGTATCTAAGAGAAAGTTGAGCCATTGGTGAAGAAGGGGT  1086

seq1  GTACCCACTGCTGGTGTGAATTC  1121
      |||||||||||||||||||||||
seq2  GTACCCACTGCTGGTGTGAATTC  1109

seq1: chr13_29331232_29331796
seq2: B6Ng01-126D12.g_451_1013 (reverse)

seq1  AGAAA-CGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGC  49
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAAACCGGGAGAGAGCACATACTAGCAGCTTGAAAACACATCTAAAAGC  50

seq1  TCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAA  99
      ||   ||||||||||||| ||||||||||||| |||||||||||||||||
seq2  TCAGAAAAAAAAGGAAGC-AATTCACCCAAGA-GAGTAGACGGCAGGAAA  98

seq1  TAATCAAACTCAGGGGTGAAA-TCAACCAAGTGGAAACAAGAAGAACTAT  148
      ||||| |||||  |||||||| | |||||||||| ||| |||  ||||||
seq2  TAATCCAACTCCAGGGTGAAATTAAACCAAGTGG-AACCAGA--AACTAT  145

seq1  TCAAAGAATTAACCAAACGAGGA-GTTGGTTCTTTGAGAAAATCAACAAG  197
      ||||||||| ||||||||||||| | ||||||||||||||||||||||||
seq2  TCAAAGAATCAACCAAACGAGGAGGCTGGTTCTTTGAGAAAATCAACAAG  195

seq1  ATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCT  245

seq1  AATTAACAAAATCAGAACTGAAAAGGGAGACATAACAACAGATCCTGAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATTAACAAAATCAGAACTGAAAAGGGAGACATAACAACAGATCCTGAAA  295

seq1  AAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAT  345

seq1  CTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACC  395

seq1  AAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTG  445

seq1  AAGAAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGA  497
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGA  495

seq1  CCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTTAT  547
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  CCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAAT  545

seq1  TCCAGTTCTGCACAAACT  565
      ||||||||||||||||||
seq2  TCCAGTTCTGCACAAACT  563