BAC Information

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BAC

Clone NameB6Ng01-126O22
Chromosome15 (Build37)
Map Location 16,354,154 - 16,397,440
singlet/doubletdoublet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126O22.bB6Ng01-126O22.g
ACCDH929178DH929179
length840699
definitionDH929178|Mus musculus domesticus DNA, BAC clone: B6Ng01-126O22, 5' end.DH929179|Mus musculus domesticus DNA, BAC clone: B6Ng01-126O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,396,601 - 16,397,440)(16,354,154 - 16,354,847)
sequence
gaattctttaaactttgatttttttaatgttctaatcactgacattgcgt
ctaaagacagtttctgctaacctatttttaaaccataatttatttacagc
aatatcatttaaatattaaatgacaacataataaattgatttgatagtgt
taaactagcaataaaaagaggtggggtattatagactataaattatgaca
ttatgaaactttgtttatgtgtgacttttattatctctaattttaaggac
atactcattttaaccctctattcagtggttaaatttaatattttaaaata
aatctcataaaacatatctttaaatattattgtgaattacttccacttta
cctattttacctatttcttttcaattttaatgggctgaacatgacttaat
gaaatttgaactttactgctaaatgaaatagcattgatattaatgtatat
tcatatcaacatatatagtatcatgcttgctctgtactaagaattgtaag
ttttaacactgttttaaagtgacttatacctaagaataccaactgtttcg
ttaatttaaatatttttctttaattagagtttgaattaatttattgctta
aaaatttaacaatgagccaggcatggtggtgcacgcctttaatcccagca
ctcaggaggcaaaggcaggtggatttctgagttagaggccagcctggtct
acaaagtgagttcaaggacagcaagggctgcacagaaaaaccctgtctcg
aaaaacaaaacaaaacaaaacaaaaaaataacaatgaaataaaatttggt
ttaaaaaatatttgtttggtgtgtgtgtgtgtgtgtgtgt
gaattctccctgttatctactcattgggaaagagcagaatacccatcagg
aattctgcactgcgagctataaagttgctactataataagcagataatcc
cttcacttaaagactattagaaaacactaaatacctctaagatatttcac
tccagttcttcaaccataggtttgtgtgtgtgtgtgtttgtctgtgtgtg
tgtttgtgtgtgtgtgtgtgtgtactgaactcatttcctttggtgattaa
aatcatcttgaataaggtttaccctattaaaaagaatctagattctacgt
tttatctcctaatttcactgatgaaaattatgaattttgactgaaacatt
atttgagattaaatttgaagtcgccttgagaaggtctcatcttatttgca
gcaccattaaacccattctcaagtcggtcataaccaggtcttactgatgc
cttcaaagacttattttctcaccccactcactctaagatttatgaatttt
catgactctaagagttttgtaaagtcagtagacagaaagaaattacttac
tccctaggcctcttcagaatttttttccttgcttcattcttataaatatt
ggaaatgcttttcaaacatcttctcaagttgccctttgcattgcagaatt
ctagaggtttatatgccccatgaaattacataaactgggcaaaggtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16396601_16397440
seq2: B6Ng01-126O22.b_49_888 (reverse)

seq1  ACACACACACACACACACACACCAAACAAATATTTTTTAAACCAAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACCAAACAAATATTTTTTAAACCAAATTTT  50

seq1  ATTTCATTGTTATTTTTTTGTTTTGTTTTGTTTTGTTTTTCGAGACAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTGTTATTTTTTTGTTTTGTTTTGTTTTGTTTTTCGAGACAGGG  100

seq1  TTTTTCTGTGCAGCCCTTGCTGTCCTTGAACTCACTTTGTAGACCAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTGCAGCCCTTGCTGTCCTTGAACTCACTTTGTAGACCAGGCT  150

seq1  GGCCTCTAACTCAGAAATCCACCTGCCTTTGCCTCCTGAGTGCTGGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTAACTCAGAAATCCACCTGCCTTTGCCTCCTGAGTGCTGGGATT  200

seq1  AAAGGCGTGCACCACCATGCCTGGCTCATTGTTAAATTTTTAAGCAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGTGCACCACCATGCCTGGCTCATTGTTAAATTTTTAAGCAATAA  250

seq1  ATTAATTCAAACTCTAATTAAAGAAAAATATTTAAATTAACGAAACAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTCAAACTCTAATTAAAGAAAAATATTTAAATTAACGAAACAGTT  300

seq1  GGTATTCTTAGGTATAAGTCACTTTAAAACAGTGTTAAAACTTACAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCTTAGGTATAAGTCACTTTAAAACAGTGTTAAAACTTACAATTC  350

seq1  TTAGTACAGAGCAAGCATGATACTATATATGTTGATATGAATATACATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACAGAGCAAGCATGATACTATATATGTTGATATGAATATACATTA  400

seq1  ATATCAATGCTATTTCATTTAGCAGTAAAGTTCAAATTTCATTAAGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAATGCTATTTCATTTAGCAGTAAAGTTCAAATTTCATTAAGTCAT  450

seq1  GTTCAGCCCATTAAAATTGAAAAGAAATAGGTAAAATAGGTAAAGTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCCCATTAAAATTGAAAAGAAATAGGTAAAATAGGTAAAGTGGAA  500

seq1  GTAATTCACAATAATATTTAAAGATATGTTTTATGAGATTTATTTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCACAATAATATTTAAAGATATGTTTTATGAGATTTATTTTAAAA  550

seq1  TATTAAATTTAACCACTGAATAGAGGGTTAAAATGAGTATGTCCTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTTAACCACTGAATAGAGGGTTAAAATGAGTATGTCCTTAAAA  600

seq1  TTAGAGATAATAAAAGTCACACATAAACAAAGTTTCATAATGTCATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATAATAAAAGTCACACATAAACAAAGTTTCATAATGTCATAATT  650

seq1  TATAGTCTATAATACCCCACCTCTTTTTATTGCTAGTTTAACACTATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCTATAATACCCCACCTCTTTTTATTGCTAGTTTAACACTATCAA  700

seq1  ATCAATTTATTATGTTGTCATTTAATATTTAAATGATATTGCTGTAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTATTATGTTGTCATTTAATATTTAAATGATATTGCTGTAAATA  750

seq1  AATTATGGTTTAAAAATAGGTTAGCAGAAACTGTCTTTAGACGCAATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGTTTAAAAATAGGTTAGCAGAAACTGTCTTTAGACGCAATGTC  800

seq1  AGTGATTAGAACATTAAAAAAATCAAAGTTTAAAGAATTC  840
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTAGAACATTAAAAAAATCAAAGTTTAAAGAATTC  840

seq1: chr15_16354154_16354847
seq2: B6Ng01-126O22.g_66_764

seq1  GAATTCTCCCTGTTATCTACTCATTGGGAAAGAGCAGAATACCCATCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTGTTATCTACTCATTGGGAAAGAGCAGAATACCCATCAGG  50

seq1  AATTCTGCACTGCGAGCTATAAAGTTGCTACTATAATAAGCAGATAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGCACTGCGAGCTATAAAGTTGCTACTATAATAAGCAGATAATCC  100

seq1  CTTCACTTAAAGACTATTAGAAAACACTAAATACCTCTAAGATATTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTAAAGACTATTAGAAAACACTAAATACCTCTAAGATATTTCAC  150

seq1  TCCAGTTCTTCAACCATAGGTTTGTGTGTGTGTGTGTTTGTCTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCTTCAACCATAGGTTTGTGTGTGTGTGTGTTTGTCTGTGTGTG  200

seq1  TGTTTGTGTGTGTGTGTGTGTGTACTGAACTCATTTCCTTTGGTGATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTGTGTGTGTGTGTGTACTGAACTCATTTCCTTTGGTGATTAA  250

seq1  AATCATCTTGAATAAGGTTTACCCTATTAAAAAGAATCTAGATTCTACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTTGAATAAGGTTTACCCTATTAAAAAGAATCTAGATTCTACGT  300

seq1  TTTATCTCCTAATTTCACTGATGAAAATTATGAATTTTGACTGAAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCCTAATTTCACTGATGAAAATTATGAATTTTGACTGAAACATT  350

seq1  ATTTGAGATTAAATTTGAAGTCGCCTTGAGAAGGTCTCATCTTATTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGATTAAATTTGAAGTCGCCTTGAGAAGGTCTCATCTTATTTGCA  400

seq1  GCACCATTAAACCCATTCTCAAGTCGGTCATAACCAGGTCTTACTGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATTAAACCCATTCTCAAGTCGGTCATAACCAGGTCTTACTGATGC  450

seq1  CTTCAAAGACTTA-TTTCTCACCCCACTCACTCTAAGATTTATGAA-TTT  498
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  CTTCAAAGACTTATTTTCTCACCCCACTCACTCTAAGATTTATGAATTTT  500

seq1  CATGACTCTAAGAGTTTTGTAAAGTCAGTAGACAGAAAGAAATTACTTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTCTAAGAGTTTTGTAAAGTCAGTAGACAGAAAGAAATTACTTAC  550

seq1  TCCCTAGGCCTCTTCAGAATTTTTTTCC-TGCTTCATTCTTATAAATATT  597
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCCTAGGCCTCTTCAGAATTTTTTTCCTTGCTTCATTCTTATAAATATT  600

seq1  GGAAATGC-TTTCAAACATCTTCTCAAGTTGCCCTTTGCATTGCAGAAGT  646
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  GGAAATGCTTTTCAAACATCTTCTCAAGTTGCCCTTTGCATTGCAGAATT  650

seq1  CTAGAGGTTTATATGCCCCATG-AATTACATTAAACT-GGCAAAGGTGAA  694
      |||||||||||||||||||||| ||||||| |||||| ||||||||||||
seq2  CTAGAGGTTTATATGCCCCATGAAATTACA-TAAACTGGGCAAAGGTGAA  699